Wall clock time and date at job start Tue Mar 31 2020 00:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00363 * 3 2 1 5 5 H 1.48498 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47368 * 120.00003 * 3 2 1 7 7 C 1.38816 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99467 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49518 * 359.97438 * 9 7 2 11 11 C 1.53948 * 86.11658 * 204.63971 * 10 9 7 12 12 C 1.47589 * 134.48881 * 180.02562 * 9 7 2 13 13 H 1.08996 * 113.86782 * 269.66892 * 12 9 7 14 14 C 1.52996 * 113.77016 * 41.05621 * 12 9 7 15 15 N 1.46498 * 109.47059 * 281.49286 * 14 12 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 12 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09003 * 115.56916 * 325.58956 * 18 16 15 20 20 C 1.52301 * 117.53844 * 111.43417 * 18 16 15 21 21 H 1.09001 * 115.91481 * 0.85158 * 20 18 16 22 22 C 1.50324 * 120.99507 * 218.00202 * 20 18 16 23 23 C 1.52868 * 110.12447 * 310.20706 * 22 20 18 24 24 C 1.53292 * 108.59095 * 304.91487 * 23 22 20 25 25 C 1.52879 * 108.58461 * 74.44451 * 24 23 22 26 26 C 1.52296 * 60.58872 * 107.41508 * 20 18 16 27 27 H 1.08998 * 117.30054 * 252.90626 * 26 20 18 28 28 H 0.97000 * 120.00215 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.76923 * 90.34101 * 10 9 7 30 30 H 1.09000 * 113.87137 * 318.95454 * 10 9 7 31 31 H 1.09003 * 113.74248 * 222.04253 * 11 10 9 32 32 H 1.09000 * 113.73699 * 90.74096 * 11 10 9 33 33 H 1.09004 * 109.47066 * 161.49553 * 14 12 9 34 34 H 1.08994 * 109.46974 * 41.49701 * 14 12 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.61811 * 189.95760 * 22 20 18 37 37 H 1.09005 * 109.30089 * 70.26175 * 22 20 18 38 38 H 1.09007 * 109.61444 * 185.18563 * 23 22 20 39 39 H 1.08996 * 109.76247 * 64.73607 * 23 22 20 40 40 H 1.09006 * 109.62318 * 314.71567 * 24 23 22 41 41 H 1.09003 * 109.61922 * 194.16883 * 24 23 22 42 42 H 1.08999 * 109.36090 * 185.26393 * 25 24 23 43 43 H 1.09008 * 109.35576 * 65.68306 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1033 -2.7574 0.0004 11 6 0.3475 -4.0832 0.6398 12 6 1.7201 -3.8102 -0.0005 13 1 1.8325 -4.2367 -0.9973 14 6 2.9024 -4.1221 0.9191 15 7 4.1496 -3.7189 0.2648 16 6 5.3282 -3.8943 0.8946 17 8 5.3567 -4.3906 2.0009 18 6 6.6108 -3.4738 0.2243 19 1 6.6372 -3.5948 -0.8587 20 6 7.3606 -2.2891 0.8190 21 1 6.9134 -1.8385 1.7050 22 6 8.0486 -1.2860 -0.0643 23 6 8.9295 -2.0029 -1.0874 24 6 9.8978 -2.9249 -0.3378 25 6 9.1212 -4.1422 0.1646 26 6 7.9211 -3.6941 0.9959 27 1 7.8462 -4.1411 1.9872 28 1 -0.4850 0.8400 0.0004 29 1 -0.5279 -2.8726 -0.9968 30 1 -0.7180 -2.1402 0.6557 31 1 -0.1591 -4.9598 0.2359 32 1 0.3603 -4.0628 1.7295 33 1 2.9298 -5.1921 1.1254 34 1 2.7893 -3.5745 1.8547 35 1 4.1269 -3.3217 -0.6198 36 1 8.6675 -0.6264 0.5440 37 1 7.2987 -0.6929 -0.5879 38 1 9.4943 -1.2688 -1.6622 39 1 8.3075 -2.5940 -1.7595 40 1 10.3298 -2.3915 0.5090 41 1 10.6904 -3.2494 -1.0121 42 1 9.7758 -4.7602 0.7790 43 1 8.7726 -4.7253 -0.6879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038138100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:53 Heat of formation + Delta-G solvation = 1.771405 kcal Electronic energy + Delta-G solvation = -22068.162343 eV Core-core repulsion = 18921.027998 eV Total energy + Delta-G solvation = -3147.134344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49754 -40.03031 -39.14891 -35.51776 -34.21429 -33.98728 -31.76158 -29.97800 -29.50547 -26.34650 -25.29551 -24.06592 -23.46116 -22.72669 -21.30125 -20.71675 -19.55889 -18.73246 -18.14830 -17.11462 -17.07061 -16.44970 -16.14241 -15.69357 -15.41177 -15.07764 -14.92725 -14.86771 -14.51728 -14.41558 -13.60949 -13.29734 -13.28082 -13.12655 -12.92797 -12.72136 -12.70486 -12.61031 -12.33563 -12.03547 -11.86411 -11.75539 -11.54434 -11.39122 -11.16975 -10.94433 -10.82901 -10.78006 -10.55835 -10.02562 -8.88671 -7.86680 -5.18320 1.42596 1.45378 1.47828 1.50800 2.17009 2.47455 2.78039 3.31411 3.37871 3.60380 3.70881 3.75972 3.94855 4.02121 4.06370 4.14324 4.19491 4.33263 4.35742 4.41854 4.61461 4.62627 4.68326 4.69655 4.81558 4.86782 4.97710 5.04653 5.05650 5.08579 5.08876 5.24911 5.32747 5.33216 5.35211 5.43260 5.46186 5.53942 5.60991 5.74149 5.98075 6.56650 6.95696 7.23641 7.65600 8.60288 9.30019 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.005196 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.784474 B = 5387.362891 C = 6745.556148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.213 4.213 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.131 4.131 12 C 0.133 3.867 13 H 0.073 0.927 14 C 0.132 3.868 15 N -0.708 5.708 16 C 0.534 3.466 17 O -0.592 6.592 18 C -0.191 4.191 19 H 0.143 0.857 20 C -0.111 4.111 21 H 0.075 0.925 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.087 4.087 26 C -0.102 4.102 27 H 0.095 0.905 28 H 0.245 0.755 29 H 0.023 0.977 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.408 0.592 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.003 -8.410 -3.680 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.342 4.342 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.025 3.975 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.007 3.993 15 N -0.357 5.357 16 C 0.322 3.678 17 O -0.473 6.473 18 C -0.212 4.212 19 H 0.161 0.839 20 C -0.130 4.130 21 H 0.094 0.906 22 C -0.128 4.128 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.121 4.121 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.244 0.756 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.021 -8.430 -2.910 19.216 hybrid contribution -0.457 1.456 -0.159 1.534 sum 16.564 -6.975 -3.069 18.233 Atomic orbital electron populations 1.69989 1.06260 1.25242 1.58908 1.25501 0.96405 1.00466 1.03885 0.85341 0.77298 0.79792 0.78121 1.19842 1.22369 1.21146 1.19242 0.90601 0.83101 1.41253 0.89931 1.46407 1.03257 0.99937 1.85967 1.22162 0.87100 0.91739 0.96480 1.23563 0.95127 0.97914 1.00368 1.22662 0.93191 0.84703 0.96778 0.91018 1.21534 0.82844 0.99198 0.95690 1.45902 1.05696 1.62616 1.21490 1.20274 0.85374 0.77169 0.84964 1.90624 1.88032 1.46893 1.21799 1.22502 0.90404 1.07460 1.00853 0.83909 1.21491 1.00689 0.90225 1.00619 0.90641 1.20629 0.98728 0.96300 0.97118 1.21644 0.97794 0.99126 0.97317 1.21572 0.97660 0.95746 1.00281 1.21121 0.94169 0.98215 0.98919 1.22397 0.92313 0.97664 0.99676 0.88722 0.94592 0.95892 0.94360 0.88666 0.90553 0.90329 0.94401 0.75632 0.90107 0.91674 0.90352 0.91708 0.91646 0.90003 0.90303 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 11.39 21.65 0.25 -57.36 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.21 -11.52 10.51 84.03 0.88 -10.64 16 8 H 0.08 4.26 7.80 -2.92 -0.02 4.23 16 9 N -0.63 -30.67 3.58 -694.20 -2.48 -33.15 16 10 C 0.15 6.96 7.51 86.48 0.65 7.61 16 11 C -0.13 -4.59 7.86 31.24 0.25 -4.34 16 12 C 0.13 4.92 4.33 45.08 0.20 5.11 16 13 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.13 4.77 5.53 86.38 0.48 5.24 16 15 N -0.71 -23.84 5.53 -463.07 -2.56 -26.40 16 16 C 0.53 18.31 7.61 87.66 0.67 18.98 16 17 O -0.59 -24.56 16.26 -3.04 -0.05 -24.61 16 18 C -0.19 -4.97 5.33 -11.55 -0.06 -5.03 16 19 H 0.14 3.02 7.31 -2.39 -0.02 3.00 16 20 C -0.11 -2.77 5.54 -12.12 -0.07 -2.84 16 21 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 22 C -0.09 -1.78 5.91 29.69 0.18 -1.61 16 23 C -0.12 -1.84 5.70 30.65 0.17 -1.66 16 24 C -0.12 -1.57 5.92 30.65 0.18 -1.39 16 25 C -0.09 -1.41 5.83 30.46 0.18 -1.23 16 26 C -0.10 -2.37 5.76 -10.90 -0.06 -2.43 16 27 H 0.09 2.60 7.66 -2.39 -0.02 2.58 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 2.02 7.16 -2.39 -0.02 2.01 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 33 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 12.77 8.47 -92.71 -0.79 11.99 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 0.99 7.15 -2.39 -0.02 0.97 16 40 H 0.06 0.91 8.04 -2.38 -0.02 0.89 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.12 8.06 -2.38 -0.02 1.10 16 Total: -1.00 -69.31 344.10 1.49 -67.83 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.20 Total: 23.51 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.10 Total: 2.27 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -4.80 Total: -116.91 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.31 1.49 -67.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038138100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.598 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds