Wall clock time and date at job start Tue Mar 31 2020 00:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48492 * 109.47334 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47088 * 299.99998 * 3 2 1 6 6 H 1.48502 * 109.46780 * 59.99815 * 3 2 1 7 7 C 1.38819 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.47059 * 136.06034 * 0.04779 * 9 7 2 11 11 C 1.53498 * 87.98500 * 152.84741 * 10 9 7 12 12 C 1.47069 * 136.05173 * 180.02562 * 9 7 2 13 13 H 1.09002 * 113.46778 * 92.37421 * 12 9 7 14 14 C 1.53001 * 113.46810 * 321.98862 * 12 9 7 15 15 N 1.46499 * 109.46863 * 75.41541 * 14 12 9 16 16 C 1.34776 * 119.99983 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.50706 * 120.00177 * 179.97438 * 16 15 14 19 19 H 1.09002 * 115.56926 * 34.15137 * 18 16 15 20 20 C 1.52302 * 117.53923 * 179.97438 * 18 16 15 21 21 H 1.08993 * 115.91135 * 0.85125 * 20 18 16 22 22 C 1.52079 * 119.83708 * 216.45662 * 20 18 16 23 23 C 1.52867 * 110.51650 * 310.44823 * 22 20 18 24 24 C 1.53292 * 108.59278 * 305.11213 * 23 22 20 25 25 C 1.52889 * 108.58382 * 74.44158 * 24 23 22 26 26 C 1.51297 * 109.90866 * 305.76667 * 25 24 23 27 27 H 1.09003 * 113.81000 * 232.10362 * 26 25 24 28 28 H 0.96996 * 120.00152 * 359.97438 * 1 2 3 29 29 H 1.08996 * 113.46902 * 267.62412 * 10 9 7 30 30 H 1.09001 * 113.47152 * 38.00705 * 10 9 7 31 31 H 1.09001 * 114.20563 * 272.47904 * 11 10 9 32 32 H 1.09002 * 114.20561 * 139.65794 * 11 10 9 33 33 H 1.09003 * 109.47012 * 195.41075 * 14 12 9 34 34 H 1.08998 * 109.47445 * 315.41381 * 14 12 9 35 35 H 0.97007 * 120.00247 * 359.97438 * 15 14 12 36 36 H 1.09004 * 109.26618 * 70.72257 * 22 20 18 37 37 H 1.09008 * 109.26287 * 190.21462 * 22 20 18 38 38 H 1.09000 * 109.61562 * 64.84428 * 23 22 20 39 39 H 1.09000 * 109.61892 * 185.19607 * 23 22 20 40 40 H 1.08998 * 109.62137 * 194.17092 * 24 23 22 41 41 H 1.08996 * 109.61978 * 314.53242 * 24 23 22 42 42 H 1.08999 * 109.35141 * 65.68950 * 25 24 23 43 43 H 1.08997 * 109.35931 * 185.40843 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.0877 -2.7948 -0.0008 11 6 0.3425 -4.0921 -0.6995 12 6 1.6800 -3.8154 0.0015 13 1 1.7436 -4.2462 1.0007 14 6 2.9007 -4.1407 -0.8617 15 7 4.1174 -3.7097 -0.1689 16 6 5.3221 -3.8965 -0.7435 17 8 5.3990 -4.4217 -1.8340 18 6 6.5738 -3.4526 -0.0311 19 1 6.5531 -3.5405 1.0552 20 6 7.9050 -3.6915 -0.7314 21 1 7.8489 -4.1589 -1.7144 22 6 9.1308 -4.0739 0.0835 23 6 9.3069 -3.1209 1.2656 24 6 9.3507 -1.6842 0.7329 25 6 7.9344 -1.2691 0.3337 26 6 7.3562 -2.2766 -0.6356 27 1 6.9604 -1.8318 -1.5487 28 1 -0.4850 0.8400 0.0004 29 1 -0.4945 -2.9541 0.9978 30 1 -0.7221 -2.1583 -0.6175 31 1 0.3843 -4.0216 -1.7865 32 1 -0.1728 -4.9839 -0.3429 33 1 2.9446 -5.2153 -1.0386 34 1 2.8211 -3.6184 -1.8151 35 1 4.0560 -3.2899 0.7035 36 1 9.0118 -5.0913 0.4562 37 1 10.0149 -4.0249 -0.5523 38 1 8.4678 -3.2310 1.9526 39 1 10.2374 -3.3500 1.7850 40 1 9.7223 -1.0167 1.5103 41 1 10.0076 -1.6358 -0.1356 42 1 7.3066 -1.2253 1.2236 43 1 7.9649 -0.2859 -0.1357 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038138102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:55 Heat of formation + Delta-G solvation = 5.025723 kcal Electronic energy + Delta-G solvation = -22094.095040 eV Core-core repulsion = 18947.101814 eV Total energy + Delta-G solvation = -3146.993226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50673 -40.17037 -39.19961 -35.50927 -34.25278 -33.99619 -31.74986 -30.02526 -29.48647 -26.30299 -25.40620 -23.96057 -23.44736 -22.70938 -21.37327 -20.83547 -19.40207 -18.79352 -18.20438 -17.12229 -17.03219 -16.44065 -16.19703 -15.70049 -15.39304 -15.09220 -14.87450 -14.85616 -14.51939 -14.38420 -13.62840 -13.35482 -13.27427 -13.14551 -12.99976 -12.72012 -12.71444 -12.60820 -12.30709 -12.05132 -11.86217 -11.76057 -11.63739 -11.30845 -11.15219 -10.93425 -10.85487 -10.74675 -10.53760 -10.01619 -8.90039 -7.88200 -5.19893 1.42690 1.44043 1.47466 1.53008 2.17647 2.46513 2.79773 3.33713 3.40900 3.61926 3.71086 3.73531 3.90846 4.03389 4.04171 4.15512 4.19239 4.32566 4.34597 4.40683 4.60291 4.62244 4.67578 4.68801 4.84622 4.86578 4.96459 5.03926 5.05814 5.08117 5.10229 5.24847 5.32014 5.32445 5.33492 5.43460 5.47170 5.53216 5.58489 5.72977 5.96354 6.56876 6.93504 7.23754 7.63528 8.63133 9.29630 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016136 B = 0.005274 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.875372 B = 5307.444524 C = 6689.689583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.205 4.205 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.135 4.135 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.130 3.870 15 N -0.708 5.708 16 C 0.534 3.466 17 O -0.592 6.592 18 C -0.193 4.193 19 H 0.142 0.858 20 C -0.095 4.095 21 H 0.092 0.908 22 C -0.085 4.085 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.093 4.093 26 C -0.117 4.117 27 H 0.080 0.920 28 H 0.245 0.755 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.846 -8.308 4.095 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.227 1.227 6 H -0.219 1.219 7 C -0.333 4.333 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.088 0.912 14 C 0.005 3.995 15 N -0.357 5.357 16 C 0.322 3.678 17 O -0.474 6.474 18 C -0.214 4.214 19 H 0.160 0.840 20 C -0.113 4.113 21 H 0.110 0.890 22 C -0.122 4.122 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.130 4.130 26 C -0.137 4.137 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.243 0.757 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.928 -8.332 3.335 19.159 hybrid contribution -0.531 1.440 0.155 1.542 sum 16.396 -6.892 3.490 18.125 Atomic orbital electron populations 1.70015 1.06327 1.25134 1.58926 1.25531 0.96428 1.00522 1.03892 0.85169 0.78499 0.80265 0.76488 1.18741 1.22691 1.21950 1.19236 0.90523 0.82461 1.41119 0.89613 1.46004 1.03645 1.00024 1.85851 1.22043 0.87780 0.92067 0.96389 1.23487 0.95791 0.98164 0.99897 1.22566 0.92890 0.84841 0.96978 0.91227 1.21587 0.83502 0.98960 0.95403 1.45895 1.05536 1.61209 1.23019 1.20260 0.85094 0.77402 0.85031 1.90620 1.87753 1.46216 1.22818 1.22482 0.90412 1.07788 1.00698 0.84006 1.21915 0.92393 0.96704 1.00336 0.89026 1.20927 0.94846 0.99802 0.96615 1.21646 1.02738 0.94401 0.97127 1.21558 0.95303 0.96928 1.01399 1.20889 0.97433 0.96904 0.97778 1.22003 1.01305 0.90120 1.00225 0.90156 0.94600 0.95852 0.94615 0.90411 0.88117 0.90446 0.94362 0.75659 0.90623 0.89885 0.91981 0.89803 0.90520 0.91378 0.91183 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 11.51 21.65 0.25 -57.39 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.21 -11.03 10.55 84.04 0.89 -10.14 16 8 H 0.09 4.41 7.68 -2.91 -0.02 4.38 16 9 N -0.63 -30.60 3.65 -713.86 -2.61 -33.21 16 10 C 0.14 6.57 7.39 83.18 0.62 7.18 16 11 C -0.13 -4.68 8.03 30.93 0.25 -4.44 16 12 C 0.13 4.95 4.10 41.80 0.17 5.12 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.13 4.70 5.53 86.38 0.48 5.18 16 15 N -0.71 -24.01 5.41 -463.06 -2.50 -26.52 16 16 C 0.53 18.40 7.62 87.66 0.67 19.06 16 17 O -0.59 -24.59 16.19 -3.03 -0.05 -24.63 16 18 C -0.19 -5.06 5.34 -11.55 -0.06 -5.12 16 19 H 0.14 3.06 7.28 -2.39 -0.02 3.05 16 20 C -0.09 -2.21 5.60 -11.64 -0.07 -2.28 16 21 H 0.09 2.53 7.55 -2.39 -0.02 2.52 16 22 C -0.08 -1.37 5.93 30.25 0.18 -1.19 16 23 C -0.12 -1.69 5.70 30.65 0.17 -1.52 16 24 C -0.11 -1.73 5.92 30.66 0.18 -1.55 16 25 C -0.09 -1.87 5.82 30.00 0.17 -1.70 16 26 C -0.12 -2.95 5.75 -11.44 -0.07 -3.02 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 1.89 7.12 -2.39 -0.02 1.87 16 31 H 0.08 2.75 8.12 -2.39 -0.02 2.73 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 12.99 8.47 -92.70 -0.79 12.21 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.06 0.91 7.12 -2.39 -0.02 0.89 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.00 8.05 -2.39 -0.02 0.98 16 42 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -69.24 343.75 1.37 -67.87 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.20 Total: 24.06 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 4.05 Total: 2.04 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.86 Total: -117.11 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.24 1.37 -67.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038138102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.894 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds