Wall clock time and date at job start Tue Mar 31 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48494 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47084 * 300.00406 * 3 2 1 6 6 H 1.48501 * 109.46689 * 60.00089 * 3 2 1 7 7 C 1.38814 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.47060 * 136.05898 * 359.95640 * 9 7 2 11 11 C 1.53502 * 87.98548 * 207.15135 * 10 9 7 12 12 C 1.47068 * 136.05658 * 179.97438 * 9 7 2 13 13 H 1.08993 * 113.47000 * 267.68883 * 12 9 7 14 14 C 1.53002 * 113.46640 * 38.06948 * 12 9 7 15 15 N 1.46500 * 109.47127 * 285.49353 * 14 12 9 16 16 C 1.34783 * 119.99729 * 179.97438 * 15 14 12 17 17 O 1.21613 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.47096 * 119.99639 * 180.02562 * 16 15 14 19 19 C 1.31561 * 119.85264 * 180.02562 * 18 16 15 20 20 C 1.51412 * 120.29328 * 179.72106 * 19 18 16 21 21 C 1.53032 * 108.57386 * 71.84723 * 20 19 18 22 22 C 1.51784 * 110.80484 * 274.28572 * 21 20 19 23 23 C 1.51786 * 113.84065 * 66.94293 * 22 21 20 24 24 C 1.51410 * 119.85586 * 0.20128 * 18 16 15 25 25 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.46468 * 321.93151 * 10 9 7 27 27 H 1.08999 * 113.47410 * 92.36813 * 10 9 7 28 28 H 1.08997 * 114.20244 * 220.33748 * 11 10 9 29 29 H 1.09000 * 114.20699 * 87.51531 * 11 10 9 30 30 H 1.08997 * 109.47458 * 165.49066 * 14 12 9 31 31 H 1.09005 * 109.47126 * 45.49228 * 14 12 9 32 32 H 0.96998 * 120.00153 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.85559 * 0.02562 * 19 18 16 34 34 H 1.09000 * 109.62326 * 191.57112 * 20 19 18 35 35 H 1.09002 * 109.61929 * 311.93508 * 20 19 18 36 36 H 1.08996 * 109.21279 * 34.62816 * 21 20 19 37 37 H 1.08992 * 109.20948 * 153.94957 * 21 20 19 38 38 H 1.09003 * 108.60729 * 188.06398 * 22 21 20 39 39 H 1.08992 * 108.61341 * 305.81251 * 22 21 20 40 40 H 1.09000 * 109.20872 * 53.40009 * 23 22 21 41 41 H 1.09007 * 109.20811 * 172.75569 * 23 22 21 42 42 H 1.08999 * 109.58774 * 348.78446 * 24 18 16 43 43 H 1.09003 * 109.63213 * 228.43643 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0876 -2.7949 0.0007 11 6 0.3426 -4.0921 0.6995 12 6 1.6800 -3.8154 -0.0015 13 1 1.7447 -4.2460 -1.0006 14 6 2.8998 -4.1409 0.8629 15 7 4.1157 -3.6902 0.1811 16 6 5.3195 -3.8728 0.7592 17 8 5.3963 -4.4111 1.8469 18 6 6.5402 -3.4197 0.0748 19 6 7.7138 -3.5998 0.6415 20 6 8.9772 -3.1431 -0.0569 21 6 9.0307 -1.6142 -0.0170 22 6 8.2580 -1.0172 -1.1790 23 6 6.7609 -1.2573 -1.1082 24 6 6.4402 -2.7447 -1.2768 25 1 -0.4850 0.8400 0.0004 26 1 -0.7218 -2.1589 0.6183 27 1 -0.4945 -2.9541 -0.9979 28 1 -0.1728 -4.9839 0.3429 29 1 0.3844 -4.0216 1.7864 30 1 2.9526 -5.2172 1.0263 31 1 2.8114 -3.6316 1.8226 32 1 4.0543 -3.2598 -0.6860 33 1 7.7767 -4.0800 1.6068 34 1 9.8474 -3.5532 0.4556 35 1 8.9673 -3.4848 -1.0919 36 1 8.5968 -1.2644 0.9197 37 1 10.0699 -1.2902 -0.0732 38 1 8.4372 0.0578 -1.2002 39 1 8.6359 -1.4481 -2.1061 40 1 6.3885 -0.9172 -0.1419 41 1 6.2693 -0.6930 -1.9007 42 1 5.4296 -2.8593 -1.6686 43 1 7.1534 -3.1972 -1.9658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038185294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:15 Heat of formation + Delta-G solvation = 17.669956 kcal Electronic energy + Delta-G solvation = -22404.918788 eV Core-core repulsion = 19258.473857 eV Total energy + Delta-G solvation = -3146.444931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.85483 -38.36381 -37.59464 -34.11467 -32.56808 -32.23943 -31.87239 -28.11062 -27.68001 -25.63460 -24.20343 -23.47912 -22.13075 -20.89922 -20.35096 -19.33563 -18.15085 -17.16922 -16.54924 -15.88711 -15.28986 -14.93286 -14.74546 -14.48214 -14.14621 -13.74178 -13.64805 -13.39946 -13.24320 -12.98215 -12.72929 -12.00789 -11.89154 -11.67578 -11.52748 -11.18393 -11.10070 -10.96563 -10.80016 -10.78294 -10.70315 -10.55894 -10.47103 -9.98135 -9.82885 -9.57386 -9.17373 -9.01020 -8.82884 -8.47530 -6.90862 -5.78127 -3.10535 1.59860 3.36084 3.41227 3.44168 3.56700 3.68682 4.41833 4.60500 4.76321 4.78935 4.96635 5.00295 5.14652 5.23262 5.33002 5.38878 5.45019 5.55261 5.57519 5.63581 5.69787 5.76570 5.81349 5.92052 5.99285 6.08427 6.10277 6.12225 6.16897 6.32894 6.38998 6.40751 6.52636 6.59833 6.68346 6.73317 6.94917 7.22329 7.39002 7.57229 7.96389 7.98416 8.63329 9.02000 9.69114 10.62001 11.39235 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.006109 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.558027 B = 4582.411845 C = 6019.647952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.212 4.212 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.547 3.453 17 O -0.558 6.558 18 C -0.170 4.170 19 C -0.082 4.082 20 C -0.093 4.093 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.080 4.080 25 H 0.252 0.748 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 -6.433 -3.446 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.339 4.339 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.358 5.358 16 C 0.335 3.665 17 O -0.439 6.439 18 C -0.173 4.173 19 C -0.102 4.102 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.118 4.118 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.876 -6.416 -2.691 15.522 hybrid contribution 0.277 1.199 -0.504 1.330 sum 14.153 -5.217 -3.196 15.418 Atomic orbital electron populations 1.69833 1.04970 1.25135 1.56600 1.24766 0.95623 0.97387 1.02631 0.86130 0.78863 0.84058 0.77279 1.20346 1.21795 1.21754 1.18906 0.90050 0.81315 1.43640 0.90111 1.45680 1.02602 0.98573 1.85849 1.22029 0.88714 0.90201 0.96487 1.23660 0.96899 0.99042 1.00381 1.22425 0.92085 0.87788 0.95829 0.93494 1.21804 0.83224 0.98173 0.97186 1.45965 1.05922 1.60446 1.23489 1.18393 0.83969 0.78961 0.85167 1.90735 1.87338 1.44724 1.21091 1.21292 0.93637 1.03913 0.98448 1.23245 0.93302 0.94523 0.99099 1.20922 0.95396 0.96030 1.00685 1.21265 1.00121 0.94254 0.99569 1.21132 0.95321 1.00736 0.98297 1.21310 0.95769 0.95297 1.03197 1.20767 1.02291 0.95253 0.93464 0.93750 0.90982 0.95743 0.92346 0.90201 0.92315 0.91121 0.76062 0.85864 0.91032 0.90497 0.91599 0.91693 0.92227 0.92301 0.91394 0.91154 0.91140 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 11.51 55.49 0.64 -26.30 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.21 -5.66 10.55 -15.06 -0.16 -5.82 16 8 H 0.08 2.08 7.50 -52.49 -0.39 1.69 16 9 N -0.60 -14.65 3.65 -177.01 -0.65 -15.30 16 10 C 0.15 3.47 7.39 -8.51 -0.06 3.41 16 11 C -0.16 -2.95 8.03 -26.21 -0.21 -3.16 16 12 C 0.13 2.46 4.10 -72.39 -0.30 2.17 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.26 5.52 -4.04 -0.02 2.24 16 15 N -0.71 -12.63 5.29 -61.49 -0.33 -12.96 16 16 C 0.55 9.88 7.75 -12.66 -0.10 9.78 16 17 O -0.56 -11.78 16.18 5.27 0.09 -11.69 16 18 C -0.17 -2.45 5.12 -102.53 -0.52 -2.97 16 19 C -0.08 -1.05 8.92 -35.81 -0.32 -1.37 16 20 C -0.09 -0.89 5.61 -27.52 -0.15 -1.04 16 21 C -0.11 -1.10 5.66 -27.33 -0.15 -1.25 16 22 C -0.12 -1.18 5.27 -27.96 -0.15 -1.33 16 23 C -0.12 -1.47 5.66 -27.30 -0.15 -1.63 16 24 C -0.08 -0.99 5.36 -27.49 -0.15 -1.13 16 25 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.40 6.87 6.15 -40.82 -0.25 6.62 16 33 H 0.12 1.69 7.44 -52.49 -0.39 1.30 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.67 6.76 -51.93 -0.35 0.32 16 36 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.52 7.88 -51.93 -0.41 0.11 16 40 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 41 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.07 0.90 5.98 -51.93 -0.31 0.59 16 43 H 0.08 0.79 6.76 -51.93 -0.35 0.44 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -31.48 338.99 -9.72 -41.19 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.01 Total: 5.47 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.55 Total: -2.41 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.33 Total: -54.56 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.48 -9.72 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038185294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.864 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds