Wall clock time and date at job start Tue Mar 31 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48494 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47084 * 300.00406 * 3 2 1 6 6 H 1.48501 * 109.46689 * 60.00089 * 3 2 1 7 7 C 1.38814 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.47060 * 136.05898 * 359.95640 * 9 7 2 11 11 C 1.53502 * 87.98548 * 207.15135 * 10 9 7 12 12 C 1.47068 * 136.05658 * 179.97438 * 9 7 2 13 13 H 1.08993 * 113.47000 * 267.68883 * 12 9 7 14 14 C 1.53002 * 113.46640 * 38.06948 * 12 9 7 15 15 N 1.46500 * 109.47127 * 285.49353 * 14 12 9 16 16 C 1.34783 * 119.99729 * 179.97438 * 15 14 12 17 17 O 1.21613 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.47096 * 119.99639 * 180.02562 * 16 15 14 19 19 C 1.31561 * 119.85264 * 180.02562 * 18 16 15 20 20 C 1.51412 * 120.29328 * 179.72106 * 19 18 16 21 21 C 1.53032 * 108.57386 * 71.84723 * 20 19 18 22 22 C 1.51784 * 110.80484 * 274.28572 * 21 20 19 23 23 C 1.51786 * 113.84065 * 66.94293 * 22 21 20 24 24 C 1.51410 * 119.85586 * 0.20128 * 18 16 15 25 25 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.46468 * 321.93151 * 10 9 7 27 27 H 1.08999 * 113.47410 * 92.36813 * 10 9 7 28 28 H 1.08997 * 114.20244 * 220.33748 * 11 10 9 29 29 H 1.09000 * 114.20699 * 87.51531 * 11 10 9 30 30 H 1.08997 * 109.47458 * 165.49066 * 14 12 9 31 31 H 1.09005 * 109.47126 * 45.49228 * 14 12 9 32 32 H 0.96998 * 120.00153 * 0.02562 * 15 14 12 33 33 H 1.08002 * 119.85559 * 0.02562 * 19 18 16 34 34 H 1.09000 * 109.62326 * 191.57112 * 20 19 18 35 35 H 1.09002 * 109.61929 * 311.93508 * 20 19 18 36 36 H 1.08996 * 109.21279 * 34.62816 * 21 20 19 37 37 H 1.08992 * 109.20948 * 153.94957 * 21 20 19 38 38 H 1.09003 * 108.60729 * 188.06398 * 22 21 20 39 39 H 1.08992 * 108.61341 * 305.81251 * 22 21 20 40 40 H 1.09000 * 109.20872 * 53.40009 * 23 22 21 41 41 H 1.09007 * 109.20811 * 172.75569 * 23 22 21 42 42 H 1.08999 * 109.58774 * 348.78446 * 24 18 16 43 43 H 1.09003 * 109.63213 * 228.43643 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0876 -2.7949 0.0007 11 6 0.3426 -4.0921 0.6995 12 6 1.6800 -3.8154 -0.0015 13 1 1.7447 -4.2460 -1.0006 14 6 2.8998 -4.1409 0.8629 15 7 4.1157 -3.6902 0.1811 16 6 5.3195 -3.8728 0.7592 17 8 5.3963 -4.4111 1.8469 18 6 6.5402 -3.4197 0.0748 19 6 7.7138 -3.5998 0.6415 20 6 8.9772 -3.1431 -0.0569 21 6 9.0307 -1.6142 -0.0170 22 6 8.2580 -1.0172 -1.1790 23 6 6.7609 -1.2573 -1.1082 24 6 6.4402 -2.7447 -1.2768 25 1 -0.4850 0.8400 0.0004 26 1 -0.7218 -2.1589 0.6183 27 1 -0.4945 -2.9541 -0.9979 28 1 -0.1728 -4.9839 0.3429 29 1 0.3844 -4.0216 1.7864 30 1 2.9526 -5.2172 1.0263 31 1 2.8114 -3.6316 1.8226 32 1 4.0543 -3.2598 -0.6860 33 1 7.7767 -4.0800 1.6068 34 1 9.8474 -3.5532 0.4556 35 1 8.9673 -3.4848 -1.0919 36 1 8.5968 -1.2644 0.9197 37 1 10.0699 -1.2902 -0.0732 38 1 8.4372 0.0578 -1.2002 39 1 8.6359 -1.4481 -2.1061 40 1 6.3885 -0.9172 -0.1419 41 1 6.2693 -0.6930 -1.9007 42 1 5.4296 -2.8593 -1.6686 43 1 7.1534 -3.1972 -1.9658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038185294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:15 Heat of formation + Delta-G solvation = -1.571114 kcal Electronic energy + Delta-G solvation = -22405.753144 eV Core-core repulsion = 19258.473857 eV Total energy + Delta-G solvation = -3147.279287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18445 -39.92141 -38.78433 -35.62389 -34.27067 -33.53168 -32.82393 -29.99017 -29.27009 -26.59822 -25.40799 -25.24721 -23.62498 -22.21949 -21.25796 -21.03705 -19.54108 -18.47827 -18.12311 -17.24200 -17.11060 -16.30217 -15.95396 -15.80239 -15.67311 -15.25748 -14.84471 -14.72696 -14.50727 -14.09020 -13.82695 -13.60739 -13.36189 -13.01062 -12.94107 -12.71583 -12.61835 -12.58930 -12.30920 -12.12250 -11.84762 -11.63333 -11.59493 -11.55552 -11.35418 -11.19928 -10.88277 -10.71954 -10.18542 -9.85214 -8.90076 -7.88439 -5.19957 0.44947 1.41493 1.43179 1.51966 2.20372 2.34577 2.46478 3.33725 3.42268 3.66542 3.75103 3.92263 3.96657 4.05059 4.11606 4.16686 4.22975 4.32096 4.45564 4.55818 4.61525 4.67066 4.76344 4.80760 4.85745 4.88827 4.93238 5.04108 5.07627 5.20334 5.23860 5.27621 5.31982 5.33081 5.43568 5.49121 5.55774 5.58577 5.67725 5.73022 5.96363 6.57495 6.93504 7.21966 7.63280 8.62967 9.29403 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.006109 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.558027 B = 4582.411845 C = 6019.647952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.300 1.300 7 C -0.204 4.204 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.134 4.134 12 C 0.133 3.867 13 H 0.070 0.930 14 C 0.129 3.871 15 N -0.707 5.707 16 C 0.541 3.459 17 O -0.597 6.597 18 C -0.192 4.192 19 C -0.064 4.064 20 C -0.088 4.088 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.072 4.072 25 H 0.245 0.755 26 H 0.036 0.964 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.407 0.593 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.349 -7.475 -4.760 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.228 1.228 7 C -0.332 4.332 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.018 3.982 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.087 0.913 14 C 0.004 3.996 15 N -0.357 5.357 16 C 0.331 3.669 17 O -0.481 6.481 18 C -0.195 4.195 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.244 0.756 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.421 -7.486 -4.027 18.490 hybrid contribution -0.480 1.437 -0.047 1.516 sum 15.941 -6.048 -4.074 17.530 Atomic orbital electron populations 1.70008 1.06278 1.25122 1.58935 1.25504 0.96410 1.00426 1.03920 0.85204 0.78547 0.80398 0.76519 1.18756 1.21842 1.22753 1.19214 0.90461 0.82461 1.41086 0.89737 1.45995 1.03666 0.99972 1.85851 1.22047 0.87738 0.92042 0.96412 1.23483 0.95683 0.98203 0.99903 1.22575 0.92931 0.84914 0.96960 0.91267 1.21616 0.83530 0.98889 0.95593 1.45967 1.05804 1.60405 1.23564 1.19039 0.84964 0.78122 0.84802 1.90704 1.87917 1.46637 1.22811 1.21241 0.92382 1.06032 0.99813 1.23535 0.94423 0.92176 0.98258 1.21020 0.93999 0.95952 1.01527 1.21270 1.01333 0.94083 0.98372 1.21129 0.93405 1.01279 0.99508 1.21322 0.97758 0.95355 1.01283 1.20754 1.02641 0.94966 0.92604 0.94583 0.94578 0.95786 0.88079 0.90384 0.90357 0.94251 0.75572 0.87323 0.88945 0.88635 0.93627 0.89183 0.91937 0.90102 0.94589 0.91284 0.92010 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 11.51 21.65 0.25 -57.45 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 45.96 29.55 68.60 2.03 47.99 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.20 -11.02 10.55 84.03 0.89 -10.13 16 8 H 0.08 4.39 7.50 -2.91 -0.02 4.36 16 9 N -0.63 -30.74 3.65 -713.92 -2.61 -33.35 16 10 C 0.14 6.60 7.39 83.18 0.61 7.22 16 11 C -0.13 -4.69 8.03 30.93 0.25 -4.44 16 12 C 0.13 4.97 4.10 41.79 0.17 5.15 16 13 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 14 C 0.13 4.74 5.52 86.38 0.48 5.21 16 15 N -0.71 -24.97 5.29 -466.70 -2.47 -27.44 16 16 C 0.54 19.49 7.75 86.57 0.67 20.16 16 17 O -0.60 -25.51 16.18 -4.07 -0.07 -25.58 16 18 C -0.19 -5.32 5.12 -17.88 -0.09 -5.41 16 19 C -0.06 -1.53 8.92 25.34 0.23 -1.31 16 20 C -0.09 -1.36 5.61 30.09 0.17 -1.19 16 21 C -0.11 -1.82 5.66 30.21 0.17 -1.65 16 22 C -0.12 -1.98 5.27 29.80 0.16 -1.82 16 23 C -0.12 -2.80 5.66 30.22 0.17 -2.63 16 24 C -0.07 -1.64 5.36 30.10 0.16 -1.48 16 25 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 26 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16 27 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 2.73 8.14 -2.39 -0.02 2.72 16 29 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.41 13.63 6.15 -92.71 -0.57 13.06 16 33 H 0.11 2.92 7.44 -2.91 -0.02 2.90 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.21 6.76 -2.39 -0.02 1.19 16 36 H 0.04 0.92 7.85 -2.39 -0.02 0.90 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.06 7.88 -2.39 -0.02 1.05 16 40 H 0.04 1.05 7.86 -2.39 -0.02 1.03 16 41 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.06 1.49 5.98 -2.39 -0.01 1.47 16 43 H 0.10 1.77 6.76 -2.39 -0.02 1.75 16 Total: -1.00 -70.47 338.99 2.06 -68.41 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.42 Total: 23.25 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 4.50 Total: 4.18 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.83 Total: -118.24 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.07 Total: -25.58 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.47 2.06 -68.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038185294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.840 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds