Wall clock time and date at job start Tue Mar 31 2020 00:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47243 * 240.00074 * 3 2 1 5 5 H 1.48502 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47016 * 120.00118 * 3 2 1 7 7 C 1.38815 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99518 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49437 * 359.97438 * 9 7 2 11 11 C 1.53945 * 86.11978 * 155.36093 * 10 9 7 12 12 C 1.47588 * 134.49245 * 179.97438 * 9 7 2 13 13 H 1.09007 * 113.86362 * 90.32800 * 12 9 7 14 14 C 1.52989 * 113.77080 * 318.94445 * 12 9 7 15 15 N 1.46505 * 109.47403 * 78.50397 * 14 12 9 16 16 C 1.34774 * 120.00091 * 180.02562 * 15 14 12 17 17 O 1.21616 * 120.00334 * 359.97438 * 16 15 14 18 18 C 1.47104 * 119.99849 * 179.97438 * 16 15 14 19 19 C 1.31564 * 119.85401 * 179.97438 * 18 16 15 20 20 C 1.51408 * 120.29197 * 180.02562 * 19 18 16 21 21 C 1.53035 * 108.72368 * 288.29698 * 20 19 18 22 22 C 1.52109 * 110.66885 * 85.51399 * 21 20 19 23 23 C 1.51777 * 114.00455 * 293.32176 * 22 21 20 24 24 C 1.51409 * 119.85348 * 0.02562 * 18 16 15 25 25 H 0.96993 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.09007 * 113.76711 * 41.06009 * 10 9 7 27 27 H 1.08998 * 113.87700 * 269.67565 * 10 9 7 28 28 H 1.09003 * 113.74431 * 269.26655 * 11 10 9 29 29 H 1.09000 * 113.84285 * 137.96300 * 11 10 9 30 30 H 1.09003 * 109.47254 * 318.50539 * 14 12 9 31 31 H 1.08999 * 109.47713 * 198.50212 * 14 12 9 32 32 H 0.97003 * 119.99585 * 359.97438 * 15 14 12 33 33 H 1.07997 * 119.85244 * 0.02562 * 19 18 16 34 34 H 1.09002 * 109.62273 * 48.11558 * 20 19 18 35 35 H 1.08998 * 109.62018 * 168.48044 * 20 19 18 36 36 H 1.09000 * 109.20742 * 206.15086 * 21 20 19 37 37 H 1.09006 * 109.21011 * 325.46269 * 21 20 19 38 38 H 1.08997 * 108.57208 * 172.11755 * 22 21 20 39 39 H 1.08996 * 108.47324 * 54.46218 * 22 21 20 40 40 H 1.09000 * 109.21392 * 306.53207 * 23 22 21 41 41 H 1.09002 * 109.17299 * 187.19854 * 23 22 21 42 42 H 1.09005 * 109.62099 * 11.31598 * 24 18 16 43 43 H 1.09005 * 109.61681 * 131.85903 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1032 -2.7574 0.0004 11 6 0.3467 -4.0827 -0.6409 12 6 1.7203 -3.8102 -0.0015 13 1 1.8335 -4.2371 0.9951 14 6 2.9018 -4.1217 -0.9221 15 7 4.1496 -3.7187 -0.2687 16 6 5.3281 -3.8985 -0.8974 17 8 5.3558 -4.3956 -2.0070 18 6 6.5809 -3.4933 -0.2415 19 6 7.7298 -3.6706 -0.8576 20 6 9.0253 -3.2577 -0.1915 21 6 9.1039 -1.7295 -0.1748 22 6 8.3791 -1.1679 1.0388 23 6 6.8773 -1.3865 1.0170 24 6 6.5427 -2.8752 1.1402 25 1 -0.4850 0.8400 0.0004 26 1 -0.7173 -2.1388 -0.6541 27 1 -0.5281 -2.8738 0.9974 28 1 0.3579 -4.0614 -1.7306 29 1 -0.1583 -4.9607 -0.2382 30 1 2.7880 -3.5735 -1.8574 31 1 2.9292 -5.1915 -1.1290 32 1 4.1275 -3.3218 0.6162 33 1 7.7489 -4.1125 -1.8428 34 1 9.0485 -3.6366 0.8303 35 1 9.8693 -3.6615 -0.7507 36 1 10.1500 -1.4245 -0.1477 37 1 8.6398 -1.3366 -1.0795 38 1 8.5738 -0.0969 1.0946 39 1 8.7863 -1.6395 1.9331 40 1 6.4727 -1.0041 0.0799 41 1 6.4249 -0.8472 1.8493 42 1 5.5463 -2.9928 1.5663 43 1 7.2773 -3.3640 1.7802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038185295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:18 Heat of formation + Delta-G solvation = 14.387868 kcal Electronic energy + Delta-G solvation = -22353.609559 eV Core-core repulsion = 19207.022305 eV Total energy + Delta-G solvation = -3146.587253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85227 -38.22219 -37.53785 -34.12725 -32.56398 -32.20372 -31.87745 -28.07099 -27.68312 -25.64756 -24.23683 -23.35773 -22.25877 -20.92742 -20.36509 -19.23800 -18.14049 -17.17959 -16.52987 -15.89603 -15.27867 -14.93974 -14.75480 -14.48797 -14.15797 -13.73688 -13.65432 -13.41772 -13.25218 -12.99683 -12.74579 -12.02458 -11.87480 -11.67788 -11.41384 -11.19928 -11.06468 -10.99012 -10.79293 -10.73305 -10.72126 -10.55682 -10.49474 -10.00132 -9.76149 -9.60953 -9.28251 -9.02175 -8.79066 -8.49538 -6.88930 -5.75809 -3.08128 1.58809 3.37643 3.42577 3.43581 3.55441 3.67402 4.43323 4.58709 4.75373 4.77834 4.95128 4.98742 5.11016 5.19278 5.31613 5.39613 5.43910 5.54937 5.62677 5.62820 5.68536 5.75250 5.80033 5.93054 5.98119 6.06897 6.08696 6.11360 6.14969 6.32600 6.36940 6.41474 6.51610 6.63281 6.67136 6.73651 6.94332 7.25472 7.41905 7.59842 7.96751 7.99236 8.62185 9.05092 9.71754 10.60256 11.40931 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.005966 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.697988 B = 4692.012231 C = 6094.865353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.708 5.708 16 C 0.547 3.453 17 O -0.557 6.557 18 C -0.170 4.170 19 C -0.082 4.082 20 C -0.093 4.093 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.080 4.080 25 H 0.253 0.747 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.041 -6.782 3.155 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.359 5.359 16 C 0.335 3.665 17 O -0.438 6.438 18 C -0.173 4.173 19 C -0.101 4.101 20 C -0.131 4.131 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.118 4.118 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.026 -6.749 2.382 15.746 hybrid contribution 0.353 1.206 0.523 1.361 sum 14.379 -5.544 2.905 15.682 Atomic orbital electron populations 1.69803 1.04947 1.25325 1.56655 1.24744 0.95597 0.97345 1.02640 0.86300 0.78605 0.83584 0.77921 1.21136 1.21591 1.21188 1.18898 0.90122 0.81917 1.43652 0.90425 1.46056 1.02265 0.98537 1.85937 1.22193 0.87946 0.89618 0.96871 1.23771 0.96144 0.98955 1.00586 1.22508 0.92411 0.87695 0.95617 0.93380 1.21758 0.82404 0.98677 0.97372 1.45963 1.06044 1.62541 1.21331 1.18390 0.84180 0.78568 0.85339 1.90739 1.87656 1.45614 1.19798 1.21295 0.93517 1.04348 0.98165 1.23244 0.93326 0.94267 0.99296 1.20919 0.95052 0.96217 1.00875 1.21329 1.00288 0.94370 0.99249 1.21183 0.95426 1.00884 0.98000 1.21312 0.95756 0.95370 1.03170 1.20779 1.02297 0.95582 0.93124 0.93669 0.90831 0.95601 0.90518 0.92820 0.90986 0.92216 0.76146 0.85851 0.90512 0.91031 0.91622 0.91619 0.92219 0.92323 0.91381 0.91138 0.91127 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 11.38 55.49 0.63 -26.38 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.87 10.51 -15.06 -0.16 -6.03 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 N -0.60 -14.71 3.57 -170.73 -0.61 -15.32 16 10 C 0.16 3.66 7.52 -2.98 -0.02 3.64 16 11 C -0.16 -2.87 7.86 -25.80 -0.20 -3.07 16 12 C 0.13 2.44 4.33 -66.86 -0.29 2.15 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.29 5.54 -4.04 -0.02 2.27 16 15 N -0.71 -12.51 5.49 -61.49 -0.34 -12.85 16 16 C 0.55 9.80 7.75 -12.66 -0.10 9.70 16 17 O -0.56 -11.73 16.18 5.26 0.09 -11.64 16 18 C -0.17 -2.42 5.10 -102.53 -0.52 -2.94 16 19 C -0.08 -1.03 8.93 -35.81 -0.32 -1.35 16 20 C -0.09 -0.88 5.61 -27.52 -0.15 -1.03 16 21 C -0.11 -1.08 5.70 -27.17 -0.15 -1.24 16 22 C -0.12 -1.15 5.27 -27.81 -0.15 -1.30 16 23 C -0.12 -1.44 5.67 -27.31 -0.15 -1.59 16 24 C -0.08 -0.97 5.37 -27.49 -0.15 -1.11 16 25 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.07 1.89 7.15 -51.92 -0.37 1.51 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 6.72 6.25 -40.82 -0.26 6.47 16 33 H 0.12 1.69 7.44 -52.49 -0.39 1.29 16 34 H 0.08 0.66 6.74 -51.93 -0.35 0.31 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 40 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.87 5.99 -51.93 -0.31 0.56 16 43 H 0.08 0.78 6.74 -51.93 -0.35 0.43 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -31.57 339.54 -9.65 -41.22 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.02 Total: 5.05 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.49 Total: -2.20 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.32 Total: -54.54 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.57 -9.65 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038185295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.606 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds