Wall clock time and date at job start Tue Mar 31 2020 00:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48493 * 109.47026 * 265.01764 * 3 2 1 5 5 H 1.48494 * 109.47042 * 25.02398 * 3 2 1 6 6 H 1.48508 * 109.47055 * 145.01850 * 3 2 1 7 7 C 1.38815 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00002 * 185.99001 * 7 2 1 9 9 N 1.36936 * 119.99896 * 5.98611 * 7 2 1 10 10 C 1.47062 * 136.05822 * 5.18130 * 9 7 2 11 11 C 1.53617 * 88.00601 * 207.03112 * 10 9 7 12 12 C 1.47074 * 136.05373 * 185.12665 * 9 7 2 13 13 H 1.08997 * 113.46452 * 267.75228 * 12 9 7 14 14 C 1.53003 * 113.46677 * 38.13977 * 12 9 7 15 15 N 1.46501 * 109.46576 * 284.58434 * 14 12 9 16 16 C 1.34777 * 119.99270 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00738 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99546 * 179.97438 * 16 15 14 19 19 H 1.08999 * 110.05428 * 335.36107 * 18 16 15 20 20 C 1.54388 * 110.06790 * 213.81562 * 18 16 15 21 21 C 1.54928 * 104.22006 * 217.20202 * 20 18 16 22 22 C 1.54993 * 102.81814 * 37.72955 * 21 20 18 23 23 C 1.53478 * 110.06850 * 96.85442 * 18 16 15 24 24 C 1.52554 * 121.08238 * 335.16533 * 23 18 16 25 25 C 1.52579 * 121.04973 * 263.45587 * 23 18 16 26 26 H 0.96999 * 120.00004 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.46894 * 321.86150 * 10 9 7 28 28 H 1.08999 * 113.46633 * 92.24657 * 10 9 7 29 29 H 1.08995 * 114.24030 * 220.40653 * 11 10 9 30 30 H 1.09003 * 114.20446 * 87.54604 * 11 10 9 31 31 H 1.08995 * 109.46574 * 164.58588 * 14 12 9 32 32 H 1.08998 * 109.47181 * 44.58856 * 14 12 9 33 33 H 0.96995 * 120.00502 * 0.02562 * 15 14 12 34 34 H 1.08994 * 110.48570 * 335.88838 * 20 18 16 35 35 H 1.08999 * 110.47864 * 98.51897 * 20 18 16 36 36 H 1.09001 * 110.74437 * 279.39730 * 21 20 18 37 37 H 1.09005 * 110.74413 * 156.06013 * 21 20 18 38 38 H 1.09000 * 110.50778 * 203.78279 * 22 21 20 39 39 H 1.09004 * 110.62660 * 81.13281 * 22 21 20 40 40 H 1.08996 * 117.51411 * 357.03374 * 24 23 18 41 41 H 1.09005 * 117.50974 * 142.12025 * 24 23 18 42 42 H 1.09004 * 117.50956 * 217.94002 * 25 23 18 43 43 H 1.09004 * 117.51068 * 3.02201 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6029 1.9856 -1.3947 5 1 1.3990 2.6807 0.5922 6 1 3.4912 1.4728 0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0858 -1.2047 0.0981 9 7 1.3311 -2.3849 -0.1226 10 6 -0.0635 -2.7851 -0.3627 11 6 0.2383 -4.0908 0.3883 12 6 1.6756 -3.8139 -0.0739 13 1 1.9067 -4.2381 -1.0509 14 6 2.7307 -4.1506 0.9818 15 7 4.0489 -3.7205 0.5091 16 6 5.1377 -3.9168 1.2788 17 8 5.0263 -4.4497 2.3626 18 6 6.4939 -3.4750 0.7924 19 1 6.5050 -3.4332 -0.2968 20 6 7.5809 -4.4481 1.2976 21 6 8.7912 -3.5347 1.6159 22 6 8.1207 -2.2704 2.2110 23 6 6.8400 -2.0982 1.3758 24 6 5.7449 -1.1309 1.8144 25 6 6.5934 -0.8210 0.5784 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7906 -2.1504 0.1438 28 1 -0.2968 -2.9348 -1.4169 29 1 -0.2115 -4.9778 -0.0577 30 1 0.0960 -4.0289 1.4672 31 1 2.7401 -5.2265 1.1556 32 1 2.4919 -3.6344 1.9117 33 1 4.1382 -3.2946 -0.3578 34 1 7.2440 -4.9622 2.1976 35 1 7.8398 -5.1673 0.5206 36 1 9.3393 -3.2892 0.7063 37 1 9.4474 -4.0048 2.3485 38 1 8.7711 -1.4033 2.0961 39 1 7.8738 -2.4249 3.2614 40 1 4.7106 -1.4340 1.6520 41 1 5.9262 -0.5381 2.7111 42 1 7.3329 -0.0246 0.6620 43 1 6.1172 -0.9204 -0.3970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038410390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:31 Heat of formation + Delta-G solvation = 32.685280 kcal Electronic energy + Delta-G solvation = -22773.669221 eV Core-core repulsion = 19627.875403 eV Total energy + Delta-G solvation = -3145.793818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24065 -38.43909 -37.50288 -34.28202 -33.73977 -32.22446 -29.69989 -28.02483 -27.31118 -25.58763 -23.48436 -22.34712 -22.19416 -20.97505 -20.28020 -19.36110 -18.58220 -16.96508 -16.42938 -15.86383 -15.57931 -15.12504 -14.85618 -14.45178 -14.03733 -13.89181 -13.57863 -13.13092 -12.94247 -12.64897 -12.42860 -11.88671 -11.59331 -11.52964 -11.26603 -11.11325 -11.07899 -10.96313 -10.81107 -10.76988 -10.62103 -10.58975 -10.07085 -10.03955 -9.85505 -9.78704 -9.41539 -9.04278 -8.83424 -8.51595 -6.89762 -5.77594 -3.11794 2.99919 3.36666 3.42343 3.43859 3.53289 4.00320 4.41262 4.42305 4.64258 4.92805 4.96925 5.14181 5.18974 5.25975 5.32396 5.40110 5.43471 5.57367 5.60561 5.74285 5.78668 5.82807 5.86392 5.91742 5.93158 5.99919 6.09872 6.12792 6.20551 6.23779 6.32532 6.35400 6.40688 6.44208 6.60235 6.72011 6.94266 7.21746 7.39446 7.58266 7.96619 7.97894 8.64588 9.00505 9.68994 10.62012 11.38131 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.006548 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.086191 B = 4275.281170 C = 5684.154145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.213 4.213 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.143 3.857 11 C -0.159 4.159 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.121 3.879 15 N -0.714 5.714 16 C 0.519 3.481 17 O -0.549 6.549 18 C -0.077 4.077 19 H 0.087 0.913 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.085 4.085 23 C -0.121 4.121 24 C -0.165 4.165 25 C -0.165 4.165 26 H 0.253 0.747 27 H 0.079 0.921 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.866 -6.996 -0.024 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.340 4.340 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.017 3.983 11 C -0.199 4.199 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.364 5.364 16 C 0.305 3.695 17 O -0.427 6.427 18 C -0.098 4.098 19 H 0.106 0.894 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.202 4.202 25 C -0.202 4.202 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.792 -7.000 0.788 14.603 hybrid contribution 0.336 1.298 -0.678 1.502 sum 13.127 -5.702 0.111 14.313 Atomic orbital electron populations 1.69818 1.05040 1.25262 1.56120 1.24752 0.95554 0.97402 1.02546 0.86266 0.79012 0.83740 0.77710 1.21677 1.21743 1.20122 1.18812 0.90325 0.81508 1.43363 0.90237 1.45592 1.05412 0.98576 1.83010 1.22155 0.89826 0.90610 0.95689 1.23657 0.96263 0.98886 1.01046 1.22426 0.92773 0.87696 0.95144 0.93532 1.21782 0.81287 0.98238 0.99040 1.46067 1.07331 1.61284 1.21728 1.20401 0.85955 0.78272 0.84844 1.90630 1.86579 1.43930 1.21594 1.21400 0.92993 0.94678 1.00740 0.89439 1.22336 0.93616 0.96745 1.02080 1.22437 0.96949 0.95696 1.00545 1.21851 0.93798 0.97766 0.98837 1.21499 0.98207 0.89447 1.03042 1.23085 0.97105 1.01602 0.98435 1.23026 1.03067 0.97323 0.96755 0.93708 0.90255 0.96055 0.92469 0.90207 0.92482 0.91181 0.76518 0.89648 0.91497 0.91465 0.91388 0.91646 0.91051 0.87451 0.88877 0.88804 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 11.42 55.49 0.63 -26.04 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 21.67 29.56 -169.99 -5.02 16.64 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.21 -5.58 10.54 -15.06 -0.16 -5.74 16 8 H 0.08 1.98 7.14 -52.49 -0.37 1.61 16 9 N -0.60 -14.41 3.64 -176.76 -0.64 -15.05 16 10 C 0.14 3.25 7.61 -8.43 -0.06 3.18 16 11 C -0.16 -2.92 8.04 -26.15 -0.21 -3.13 16 12 C 0.13 2.44 4.10 -72.37 -0.30 2.14 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 15 N -0.71 -12.18 5.22 -60.29 -0.31 -12.49 16 16 C 0.52 8.86 5.56 -10.98 -0.06 8.80 16 17 O -0.55 -11.15 15.80 5.56 0.09 -11.06 16 18 C -0.08 -1.05 3.16 -90.79 -0.29 -1.34 16 19 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 20 C -0.11 -1.32 6.33 -24.99 -0.16 -1.48 16 21 C -0.12 -1.21 6.91 -24.66 -0.17 -1.38 16 22 C -0.09 -1.00 6.58 -25.23 -0.17 -1.16 16 23 C -0.12 -1.67 2.26 -154.26 -0.35 -2.02 16 24 C -0.17 -2.68 9.63 -26.91 -0.26 -2.94 16 25 C -0.16 -2.27 10.23 -26.90 -0.28 -2.55 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.08 2.04 6.83 -51.93 -0.35 1.68 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.40 6.52 8.40 -40.82 -0.34 6.17 16 34 H 0.08 1.19 6.94 -51.93 -0.36 0.83 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 2.07 6.59 -51.93 -0.34 1.73 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -30.69 345.19 -9.88 -40.57 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.25 Total: 7.89 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.57 Total: -5.66 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.32 Total: -53.59 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.69 -9.88 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038410390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.257 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds