Wall clock time and date at job start Tue Mar 31 2020 00:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48493 * 109.47026 * 265.01764 * 3 2 1 5 5 H 1.48494 * 109.47042 * 25.02398 * 3 2 1 6 6 H 1.48508 * 109.47055 * 145.01850 * 3 2 1 7 7 C 1.38815 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00002 * 185.99001 * 7 2 1 9 9 N 1.36936 * 119.99896 * 5.98611 * 7 2 1 10 10 C 1.47062 * 136.05822 * 5.18130 * 9 7 2 11 11 C 1.53617 * 88.00601 * 207.03112 * 10 9 7 12 12 C 1.47074 * 136.05373 * 185.12665 * 9 7 2 13 13 H 1.08997 * 113.46452 * 267.75228 * 12 9 7 14 14 C 1.53003 * 113.46677 * 38.13977 * 12 9 7 15 15 N 1.46501 * 109.46576 * 284.58434 * 14 12 9 16 16 C 1.34777 * 119.99270 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00738 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99546 * 179.97438 * 16 15 14 19 19 H 1.08999 * 110.05428 * 335.36107 * 18 16 15 20 20 C 1.54388 * 110.06790 * 213.81562 * 18 16 15 21 21 C 1.54928 * 104.22006 * 217.20202 * 20 18 16 22 22 C 1.54993 * 102.81814 * 37.72955 * 21 20 18 23 23 C 1.53478 * 110.06850 * 96.85442 * 18 16 15 24 24 C 1.52554 * 121.08238 * 335.16533 * 23 18 16 25 25 C 1.52579 * 121.04973 * 263.45587 * 23 18 16 26 26 H 0.96999 * 120.00004 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.46894 * 321.86150 * 10 9 7 28 28 H 1.08999 * 113.46633 * 92.24657 * 10 9 7 29 29 H 1.08995 * 114.24030 * 220.40653 * 11 10 9 30 30 H 1.09003 * 114.20446 * 87.54604 * 11 10 9 31 31 H 1.08995 * 109.46574 * 164.58588 * 14 12 9 32 32 H 1.08998 * 109.47181 * 44.58856 * 14 12 9 33 33 H 0.96995 * 120.00502 * 0.02562 * 15 14 12 34 34 H 1.08994 * 110.48570 * 335.88838 * 20 18 16 35 35 H 1.08999 * 110.47864 * 98.51897 * 20 18 16 36 36 H 1.09001 * 110.74437 * 279.39730 * 21 20 18 37 37 H 1.09005 * 110.74413 * 156.06013 * 21 20 18 38 38 H 1.09000 * 110.50778 * 203.78279 * 22 21 20 39 39 H 1.09004 * 110.62660 * 81.13281 * 22 21 20 40 40 H 1.08996 * 117.51411 * 357.03374 * 24 23 18 41 41 H 1.09005 * 117.50974 * 142.12025 * 24 23 18 42 42 H 1.09004 * 117.50956 * 217.94002 * 25 23 18 43 43 H 1.09004 * 117.51068 * 3.02201 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6029 1.9856 -1.3947 5 1 1.3990 2.6807 0.5922 6 1 3.4912 1.4728 0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0858 -1.2047 0.0981 9 7 1.3311 -2.3849 -0.1226 10 6 -0.0635 -2.7851 -0.3627 11 6 0.2383 -4.0908 0.3883 12 6 1.6756 -3.8139 -0.0739 13 1 1.9067 -4.2381 -1.0509 14 6 2.7307 -4.1506 0.9818 15 7 4.0489 -3.7205 0.5091 16 6 5.1377 -3.9168 1.2788 17 8 5.0263 -4.4497 2.3626 18 6 6.4939 -3.4750 0.7924 19 1 6.5050 -3.4332 -0.2968 20 6 7.5809 -4.4481 1.2976 21 6 8.7912 -3.5347 1.6159 22 6 8.1207 -2.2704 2.2110 23 6 6.8400 -2.0982 1.3758 24 6 5.7449 -1.1309 1.8144 25 6 6.5934 -0.8210 0.5784 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7906 -2.1504 0.1438 28 1 -0.2968 -2.9348 -1.4169 29 1 -0.2115 -4.9778 -0.0577 30 1 0.0960 -4.0289 1.4672 31 1 2.7401 -5.2265 1.1556 32 1 2.4919 -3.6344 1.9117 33 1 4.1382 -3.2946 -0.3578 34 1 7.2440 -4.9622 2.1976 35 1 7.8398 -5.1673 0.5206 36 1 9.3393 -3.2892 0.7063 37 1 9.4474 -4.0048 2.3485 38 1 8.7711 -1.4033 2.0961 39 1 7.8738 -2.4249 3.2614 40 1 4.7106 -1.4340 1.6520 41 1 5.9262 -0.5381 2.7111 42 1 7.3329 -0.0246 0.6620 43 1 6.1172 -0.9204 -0.3970 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038410390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:30 Heat of formation + Delta-G solvation = 14.131173 kcal Electronic energy + Delta-G solvation = -22774.473787 eV Core-core repulsion = 19627.875403 eV Total energy + Delta-G solvation = -3146.598384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49190 -40.01939 -38.85270 -35.60034 -34.94535 -34.22107 -30.88398 -29.92335 -28.71380 -26.62628 -25.39080 -23.82254 -23.43138 -22.18215 -21.41916 -21.02597 -19.89453 -18.59851 -17.87135 -17.25949 -17.01670 -16.61094 -16.14708 -15.84406 -15.59983 -15.43409 -15.01057 -14.60715 -14.36772 -13.83735 -13.56188 -13.43184 -13.32798 -12.92078 -12.70490 -12.57835 -12.57096 -12.44147 -12.36285 -11.97184 -11.87558 -11.77431 -11.61932 -11.51612 -11.27899 -11.17060 -10.94886 -10.84055 -10.39525 -9.99617 -8.86818 -7.85258 -5.18498 1.43779 1.45441 1.52851 1.65288 2.22436 2.47781 2.82706 3.35069 3.38417 3.45515 3.63642 3.82562 3.87857 3.94283 4.04910 4.15865 4.27947 4.33292 4.34866 4.46679 4.62901 4.67497 4.68712 4.74439 4.77611 4.87674 4.91222 4.98798 5.04033 5.06760 5.08028 5.14954 5.18399 5.19010 5.27136 5.35601 5.45023 5.52905 5.61300 5.74810 6.00022 6.60024 6.94267 7.28486 7.65847 8.65228 9.30811 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.006548 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.086191 B = 4275.281170 C = 5684.154145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.960 3.040 4 H -0.285 1.285 5 H -0.303 1.303 6 H -0.264 1.264 7 C -0.201 4.201 8 H 0.088 0.912 9 N -0.627 5.627 10 C 0.134 3.866 11 C -0.135 4.135 12 C 0.134 3.866 13 H 0.072 0.928 14 C 0.131 3.869 15 N -0.712 5.712 16 C 0.518 3.482 17 O -0.586 6.586 18 C -0.077 4.077 19 H 0.110 0.890 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.198 4.198 25 C -0.150 4.150 26 H 0.244 0.756 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.406 0.594 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.647 -8.114 -1.160 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.789 3.211 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.330 4.330 8 H 0.106 0.894 9 N -0.353 5.353 10 C 0.008 3.992 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.089 0.911 14 C 0.006 3.994 15 N -0.361 5.361 16 C 0.305 3.695 17 O -0.467 6.467 18 C -0.098 4.098 19 H 0.128 0.872 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.235 4.235 25 C -0.186 4.186 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.241 0.759 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.603 -8.150 -0.366 17.607 hybrid contribution -0.560 1.559 -0.299 1.684 sum 15.044 -6.590 -0.666 16.438 Atomic orbital electron populations 1.70010 1.06377 1.25062 1.58801 1.25494 0.96300 1.00456 1.04021 0.85340 0.78021 0.80001 0.77732 1.21190 1.23046 1.18888 1.19177 0.90881 0.82479 1.40429 0.89429 1.45909 1.06374 1.00027 1.83018 1.22175 0.88596 0.92373 0.96039 1.23482 0.95383 0.98108 1.00411 1.22567 0.93561 0.84823 0.96239 0.91064 1.21544 0.81924 0.98782 0.97167 1.46056 1.06980 1.61166 1.21948 1.21037 0.87049 0.77225 0.84147 1.90612 1.87247 1.45633 1.23189 1.21543 0.91168 0.95068 1.02030 0.87234 1.22356 0.93691 0.97000 1.01660 1.22442 0.96253 0.94182 1.01759 1.21914 0.93125 0.99569 0.97805 1.21639 0.97828 0.89221 1.02637 1.22970 0.96032 1.04363 1.00182 1.23118 1.02214 0.97853 0.95459 0.94736 0.93980 0.95725 0.88237 0.90777 0.90635 0.94729 0.75926 0.92063 0.89310 0.89378 0.89914 0.89710 0.92337 0.91141 0.88933 0.86614 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 11.42 21.65 0.25 -57.28 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.96 45.46 29.56 68.60 2.03 47.49 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.20 -10.67 10.54 84.03 0.89 -9.78 16 8 H 0.09 4.38 7.14 -2.91 -0.02 4.36 16 9 N -0.63 -30.18 3.64 -713.13 -2.60 -32.78 16 10 C 0.13 6.12 7.61 83.23 0.63 6.76 16 11 C -0.14 -4.74 8.04 30.97 0.25 -4.49 16 12 C 0.13 4.95 4.10 41.80 0.17 5.12 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.13 4.71 5.52 86.38 0.48 5.19 16 15 N -0.71 -23.64 5.22 -463.05 -2.42 -26.06 16 16 C 0.52 17.30 5.56 87.66 0.49 17.78 16 17 O -0.59 -23.92 15.80 -3.03 -0.05 -23.97 16 18 C -0.08 -1.94 3.16 -10.91 -0.03 -1.98 16 19 H 0.11 2.29 8.12 -2.39 -0.02 2.27 16 20 C -0.11 -2.33 6.33 31.72 0.20 -2.13 16 21 C -0.11 -1.82 6.91 31.93 0.22 -1.60 16 22 C -0.09 -1.80 6.58 31.57 0.21 -1.59 16 23 C -0.11 -2.88 2.26 -52.02 -0.12 -3.00 16 24 C -0.20 -6.36 9.63 30.48 0.29 -6.07 16 25 C -0.15 -3.77 10.23 30.49 0.31 -3.46 16 26 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.04 2.24 6.83 -2.39 -0.02 2.22 16 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.69 16 30 H 0.07 2.70 8.12 -2.39 -0.02 2.68 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.41 12.61 8.40 -92.71 -0.78 11.83 16 34 H 0.06 1.63 6.94 -2.39 -0.02 1.62 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.08 1.44 8.11 -2.39 -0.02 1.42 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 2.78 6.59 -2.39 -0.02 2.77 16 41 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 42 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 43 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -69.13 345.19 1.88 -67.25 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.21 Total: 28.07 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 4.45 Total: -2.73 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.77 Total: -116.11 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.13 1.88 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038410390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.384 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds