Wall clock time and date at job start Tue Mar 31 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48503 * 109.47037 * 239.99853 * 3 2 1 5 5 H 1.48495 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46979 * 120.00359 * 3 2 1 7 7 C 1.38810 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99509 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.48801 * 359.97438 * 9 7 2 11 11 C 1.53946 * 86.11507 * 155.36613 * 10 9 7 12 12 C 1.47579 * 134.49404 * 180.02562 * 9 7 2 13 13 H 1.08997 * 113.87424 * 90.32170 * 12 9 7 14 14 C 1.53003 * 113.76991 * 318.93666 * 12 9 7 15 15 N 1.46499 * 109.46968 * 78.50347 * 14 12 9 16 16 C 1.34779 * 119.99668 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99901 * 180.02562 * 16 15 14 19 19 H 1.08990 * 110.05279 * 334.28596 * 18 16 15 20 20 C 1.54386 * 110.06771 * 212.74501 * 18 16 15 21 21 C 1.54938 * 104.21793 * 217.20344 * 20 18 16 22 22 C 1.54981 * 102.81972 * 37.72532 * 21 20 18 23 23 C 1.53481 * 110.06843 * 95.77577 * 18 16 15 24 24 C 1.52551 * 121.08289 * 335.17742 * 23 18 16 25 25 C 1.52568 * 121.05096 * 263.46508 * 23 18 16 26 26 H 0.96997 * 120.00736 * 0.02562 * 1 2 3 27 27 H 1.08994 * 113.76978 * 41.06552 * 10 9 7 28 28 H 1.09002 * 113.77226 * 269.66588 * 10 9 7 29 29 H 1.09001 * 113.74182 * 269.26290 * 11 10 9 30 30 H 1.08999 * 113.74375 * 137.95260 * 11 10 9 31 31 H 1.08995 * 109.46966 * 198.50792 * 14 12 9 32 32 H 1.09008 * 109.46471 * 318.50497 * 14 12 9 33 33 H 0.96996 * 120.00116 * 0.02562 * 15 14 12 34 34 H 1.09000 * 110.48698 * 335.88083 * 20 18 16 35 35 H 1.08997 * 110.48437 * 98.52242 * 20 18 16 36 36 H 1.09003 * 110.74244 * 279.39425 * 21 20 18 37 37 H 1.09000 * 110.89773 * 156.13610 * 21 20 18 38 38 H 1.08994 * 110.51449 * 203.78952 * 22 21 20 39 39 H 1.09000 * 110.51250 * 81.07590 * 22 21 20 40 40 H 1.09000 * 117.51069 * 357.03239 * 24 23 18 41 41 H 1.09006 * 117.51103 * 142.10875 * 24 23 18 42 42 H 1.09011 * 117.50676 * 217.93175 * 25 23 18 43 43 H 1.08997 * 117.51373 * 2.98511 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7574 0.0005 11 6 0.3471 -4.0830 -0.6397 12 6 1.7202 -3.8101 0.0015 13 1 1.8320 -4.2363 0.9984 14 6 2.9032 -4.1225 -0.9173 15 7 4.1499 -3.7188 -0.2624 16 6 5.3294 -3.9001 -0.8889 17 8 5.3585 -4.3969 -1.9949 18 6 6.6120 -3.4854 -0.2150 19 1 6.4164 -2.6892 0.5031 20 6 7.6347 -3.0101 -1.2694 21 6 8.9960 -3.5254 -0.7385 22 6 8.6314 -4.9090 -0.1429 23 6 7.2478 -4.6894 0.4935 24 6 6.4000 -5.8730 0.9490 25 6 7.0255 -4.9333 1.9831 26 1 -0.4851 0.8400 -0.0004 27 1 -0.7168 -2.1392 -0.6547 28 1 -0.5272 -2.8730 0.9981 29 1 0.3592 -4.0622 -1.7294 30 1 -0.1591 -4.9597 -0.2357 31 1 2.9307 -5.1924 -1.1231 32 1 2.7906 -3.5751 -1.8532 33 1 4.1266 -3.3219 0.6223 34 1 7.4131 -3.4506 -2.2415 35 1 7.6378 -1.9221 -1.3343 36 1 9.3847 -2.8626 0.0347 37 1 9.7150 -3.6320 -1.5507 38 1 9.3580 -5.2022 0.6147 39 1 8.5746 -5.6607 -0.9302 40 1 5.3226 -5.8088 0.7969 41 1 6.8308 -6.8693 0.8482 42 1 7.8679 -5.3114 2.5625 43 1 6.3600 -4.2506 2.5113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038410392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:37 Heat of formation + Delta-G solvation = 28.972704 kcal Electronic energy + Delta-G solvation = -22398.413184 eV Core-core repulsion = 19252.458377 eV Total energy + Delta-G solvation = -3145.954807 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31213 -38.35112 -37.49776 -34.38731 -33.79123 -32.18679 -29.74257 -27.95408 -27.36560 -25.69005 -23.36905 -22.59753 -22.37662 -21.02522 -20.34245 -19.29829 -18.63098 -17.01743 -16.37454 -15.97710 -15.66010 -15.13026 -14.96633 -14.48385 -14.29694 -13.75794 -13.59857 -13.17407 -13.09689 -12.68245 -12.50981 -11.90121 -11.60034 -11.55198 -11.42100 -11.13724 -11.10090 -11.02123 -10.90494 -10.74106 -10.62393 -10.56865 -10.32341 -10.11820 -9.91683 -9.76853 -9.51856 -9.15816 -8.80178 -8.54144 -6.89989 -5.76876 -3.09335 2.97298 3.37177 3.41468 3.43145 3.44090 3.84340 4.30454 4.42685 4.53200 4.77060 4.79643 5.01603 5.11249 5.16768 5.27095 5.40172 5.45320 5.54648 5.56868 5.61952 5.68330 5.72858 5.76392 5.80324 5.90525 5.91962 5.98473 6.04483 6.05476 6.09812 6.14451 6.32691 6.35476 6.40700 6.62064 6.72877 6.93017 7.24100 7.40836 7.58558 7.94340 7.98060 8.62273 9.03751 9.70630 10.59155 11.39812 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.005255 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.837882 B = 5326.473327 C = 6233.927574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.714 5.714 16 C 0.520 3.480 17 O -0.549 6.549 18 C -0.079 4.079 19 H 0.091 0.909 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.170 4.170 25 C -0.166 4.166 26 H 0.253 0.747 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 -10.208 2.557 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.364 5.364 16 C 0.306 3.694 17 O -0.427 6.427 18 C -0.100 4.100 19 H 0.109 0.891 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.207 4.207 25 C -0.203 4.203 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.252 -10.188 1.752 16.808 hybrid contribution 0.307 1.232 0.689 1.444 sum 13.560 -8.957 2.441 16.433 Atomic orbital electron populations 1.69801 1.04957 1.25360 1.56576 1.24749 0.95610 0.97380 1.02593 0.86285 0.78580 0.83543 0.77878 1.21137 1.21546 1.21262 1.18888 0.90092 0.81944 1.43767 0.90483 1.46058 1.02263 0.98546 1.85941 1.22198 0.87956 0.89626 0.96864 1.23778 0.96205 0.98950 1.00563 1.22501 0.92395 0.87661 0.95583 0.93443 1.21733 0.82534 0.98545 0.97335 1.46065 1.06109 1.62979 1.21252 1.20366 0.84956 0.78275 0.85803 1.90632 1.87309 1.44735 1.19999 1.21423 0.93342 0.97173 0.98091 0.89104 1.22347 0.92947 1.00747 0.98876 1.22444 0.96909 0.96239 1.00096 1.21858 0.93271 0.97776 0.99347 1.21513 0.97090 0.96866 0.96171 1.23002 0.99640 0.94819 1.03225 1.23051 1.03232 1.03107 0.90924 0.93647 0.90830 0.95616 0.90522 0.92849 0.92382 0.91079 0.76503 0.89552 0.91184 0.91419 0.91285 0.91612 0.90997 0.88451 0.88710 0.88624 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.38 55.49 0.63 -26.34 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.22 -5.88 10.51 -15.06 -0.16 -6.04 16 8 H 0.08 1.98 7.80 -52.48 -0.41 1.58 16 9 N -0.60 -14.64 3.57 -170.74 -0.61 -15.25 16 10 C 0.16 3.65 7.51 -2.98 -0.02 3.63 16 11 C -0.16 -2.86 7.86 -25.79 -0.20 -3.07 16 12 C 0.13 2.43 4.33 -66.84 -0.29 2.14 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.25 5.54 -4.04 -0.02 2.23 16 15 N -0.71 -12.09 5.24 -60.29 -0.32 -12.41 16 16 C 0.52 8.81 5.59 -10.99 -0.06 8.74 16 17 O -0.55 -11.06 15.78 5.56 0.09 -10.98 16 18 C -0.08 -1.07 3.16 -90.80 -0.29 -1.36 16 19 H 0.09 1.16 8.13 -51.93 -0.42 0.74 16 20 C -0.11 -1.42 6.33 -24.98 -0.16 -1.58 16 21 C -0.12 -1.20 6.91 -24.66 -0.17 -1.37 16 22 C -0.09 -0.88 6.58 -25.23 -0.17 -1.04 16 23 C -0.12 -1.35 2.26 -154.25 -0.35 -1.70 16 24 C -0.17 -1.96 9.63 -26.91 -0.26 -2.22 16 25 C -0.17 -1.68 10.23 -26.91 -0.28 -1.96 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 33 H 0.40 6.47 8.47 -40.82 -0.35 6.12 16 34 H 0.09 1.27 6.92 -51.93 -0.36 0.91 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.26 7.07 -51.93 -0.37 0.90 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -31.20 346.55 -9.85 -41.05 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.32 Total: 5.59 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.52 Total: -3.88 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.29 Total: -54.00 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.20 -9.85 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038410392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.026 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds