Wall clock time and date at job start Tue Mar 31 2020 00:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48503 * 109.47037 * 239.99853 * 3 2 1 5 5 H 1.48495 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46979 * 120.00359 * 3 2 1 7 7 C 1.38810 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99509 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.48801 * 359.97438 * 9 7 2 11 11 C 1.53946 * 86.11507 * 155.36613 * 10 9 7 12 12 C 1.47579 * 134.49404 * 180.02562 * 9 7 2 13 13 H 1.08997 * 113.87424 * 90.32170 * 12 9 7 14 14 C 1.53003 * 113.76991 * 318.93666 * 12 9 7 15 15 N 1.46499 * 109.46968 * 78.50347 * 14 12 9 16 16 C 1.34779 * 119.99668 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99901 * 180.02562 * 16 15 14 19 19 H 1.08990 * 110.05279 * 334.28596 * 18 16 15 20 20 C 1.54386 * 110.06771 * 212.74501 * 18 16 15 21 21 C 1.54938 * 104.21793 * 217.20344 * 20 18 16 22 22 C 1.54981 * 102.81972 * 37.72532 * 21 20 18 23 23 C 1.53481 * 110.06843 * 95.77577 * 18 16 15 24 24 C 1.52551 * 121.08289 * 335.17742 * 23 18 16 25 25 C 1.52568 * 121.05096 * 263.46508 * 23 18 16 26 26 H 0.96997 * 120.00736 * 0.02562 * 1 2 3 27 27 H 1.08994 * 113.76978 * 41.06552 * 10 9 7 28 28 H 1.09002 * 113.77226 * 269.66588 * 10 9 7 29 29 H 1.09001 * 113.74182 * 269.26290 * 11 10 9 30 30 H 1.08999 * 113.74375 * 137.95260 * 11 10 9 31 31 H 1.08995 * 109.46966 * 198.50792 * 14 12 9 32 32 H 1.09008 * 109.46471 * 318.50497 * 14 12 9 33 33 H 0.96996 * 120.00116 * 0.02562 * 15 14 12 34 34 H 1.09000 * 110.48698 * 335.88083 * 20 18 16 35 35 H 1.08997 * 110.48437 * 98.52242 * 20 18 16 36 36 H 1.09003 * 110.74244 * 279.39425 * 21 20 18 37 37 H 1.09000 * 110.89773 * 156.13610 * 21 20 18 38 38 H 1.08994 * 110.51449 * 203.78952 * 22 21 20 39 39 H 1.09000 * 110.51250 * 81.07590 * 22 21 20 40 40 H 1.09000 * 117.51069 * 357.03239 * 24 23 18 41 41 H 1.09006 * 117.51103 * 142.10875 * 24 23 18 42 42 H 1.09011 * 117.50676 * 217.93175 * 25 23 18 43 43 H 1.08997 * 117.51373 * 2.98511 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7574 0.0005 11 6 0.3471 -4.0830 -0.6397 12 6 1.7202 -3.8101 0.0015 13 1 1.8320 -4.2363 0.9984 14 6 2.9032 -4.1225 -0.9173 15 7 4.1499 -3.7188 -0.2624 16 6 5.3294 -3.9001 -0.8889 17 8 5.3585 -4.3969 -1.9949 18 6 6.6120 -3.4854 -0.2150 19 1 6.4164 -2.6892 0.5031 20 6 7.6347 -3.0101 -1.2694 21 6 8.9960 -3.5254 -0.7385 22 6 8.6314 -4.9090 -0.1429 23 6 7.2478 -4.6894 0.4935 24 6 6.4000 -5.8730 0.9490 25 6 7.0255 -4.9333 1.9831 26 1 -0.4851 0.8400 -0.0004 27 1 -0.7168 -2.1392 -0.6547 28 1 -0.5272 -2.8730 0.9981 29 1 0.3592 -4.0622 -1.7294 30 1 -0.1591 -4.9597 -0.2357 31 1 2.9307 -5.1924 -1.1231 32 1 2.7906 -3.5751 -1.8532 33 1 4.1266 -3.3219 0.6223 34 1 7.4131 -3.4506 -2.2415 35 1 7.6378 -1.9221 -1.3343 36 1 9.3847 -2.8626 0.0347 37 1 9.7150 -3.6320 -1.5507 38 1 9.3580 -5.2022 0.6147 39 1 8.5746 -5.6607 -0.9302 40 1 5.3226 -5.8088 0.7969 41 1 6.8308 -6.8693 0.8482 42 1 7.8679 -5.3114 2.5625 43 1 6.3600 -4.2506 2.5113 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038410392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:36 Heat of formation + Delta-G solvation = 10.288209 kcal Electronic energy + Delta-G solvation = -22399.223404 eV Core-core repulsion = 19252.458377 eV Total energy + Delta-G solvation = -3146.765028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48488 -39.87021 -38.81756 -35.62942 -34.92887 -34.20162 -30.89519 -29.86378 -28.76398 -26.64536 -25.29625 -23.95386 -23.38700 -22.21354 -21.43490 -20.91278 -19.87607 -18.63002 -17.83429 -17.18208 -17.09468 -16.69493 -16.06711 -15.88434 -15.62272 -15.46769 -14.90230 -14.75469 -14.36448 -13.76274 -13.55373 -13.44052 -13.27119 -12.92794 -12.70965 -12.62007 -12.57280 -12.38669 -12.32554 -11.97642 -11.85784 -11.82752 -11.56098 -11.53528 -11.40520 -11.16114 -10.98361 -10.82632 -10.38853 -10.01370 -8.88664 -7.86665 -5.18385 1.42992 1.45633 1.51078 1.64818 2.20471 2.47438 2.86366 3.32684 3.38046 3.40962 3.62821 3.82706 3.88187 3.98145 4.06995 4.14701 4.27776 4.33329 4.33902 4.47424 4.60993 4.66632 4.69965 4.77642 4.79589 4.87114 4.91888 5.00645 5.04250 5.06241 5.09264 5.14874 5.17324 5.23969 5.26796 5.33002 5.43031 5.50150 5.61015 5.74057 5.98154 6.58391 6.95459 7.26869 7.65555 8.60364 9.29998 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.005255 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.837882 B = 5326.473327 C = 6233.927574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.214 4.214 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.134 3.866 13 H 0.071 0.929 14 C 0.133 3.867 15 N -0.712 5.712 16 C 0.518 3.482 17 O -0.586 6.586 18 C -0.078 4.078 19 H 0.099 0.901 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.182 4.182 25 C -0.146 4.146 26 H 0.245 0.755 27 H 0.038 0.962 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.406 0.594 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.440 -11.328 3.912 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.343 4.343 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.025 3.975 11 C -0.170 4.170 12 C 0.028 3.972 13 H 0.088 0.912 14 C 0.008 3.992 15 N -0.362 5.362 16 C 0.306 3.694 17 O -0.466 6.466 18 C -0.099 4.099 19 H 0.117 0.883 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.219 4.219 25 C -0.183 4.183 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.241 0.759 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.469 -11.339 3.127 19.433 hybrid contribution -0.393 1.501 0.243 1.571 sum 15.076 -9.838 3.371 18.315 Atomic orbital electron populations 1.69988 1.06267 1.25257 1.58865 1.25506 0.96412 1.00485 1.03868 0.85334 0.77283 0.79776 0.78101 1.21085 1.22369 1.19930 1.19250 0.90629 0.83106 1.41309 0.89878 1.46398 1.03222 0.99923 1.85944 1.22165 0.87141 0.91749 0.96448 1.23576 0.95205 0.97882 1.00361 1.22656 0.93211 0.84682 0.96689 0.91212 1.21492 0.82972 0.99027 0.95675 1.46056 1.05859 1.62902 1.21360 1.21007 0.85832 0.77225 0.85307 1.90612 1.87867 1.46450 1.21691 1.21500 0.91645 0.98446 0.98360 0.88272 1.22370 0.94619 1.00849 0.97565 1.22438 0.95357 0.96241 1.00808 1.21874 0.92950 0.97585 0.99609 1.21590 0.97579 0.96073 0.97476 1.23015 0.98707 0.95539 1.04617 1.23134 1.03386 1.01791 0.89978 0.94587 0.94338 0.95932 0.90549 0.88771 0.90607 0.94378 0.75914 0.92097 0.90892 0.89825 0.90150 0.89288 0.91990 0.90246 0.87742 0.86397 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 11.38 21.65 0.25 -57.22 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.21 -11.52 10.51 84.03 0.88 -10.64 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 9 N -0.63 -30.49 3.57 -694.11 -2.48 -32.97 16 10 C 0.15 6.94 7.51 86.48 0.65 7.59 16 11 C -0.13 -4.60 7.86 31.27 0.25 -4.35 16 12 C 0.13 4.93 4.33 45.11 0.20 5.12 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.13 4.76 5.54 86.38 0.48 5.24 16 15 N -0.71 -23.52 5.24 -463.05 -2.43 -25.95 16 16 C 0.52 17.34 5.59 87.66 0.49 17.83 16 17 O -0.59 -23.85 15.78 -3.03 -0.05 -23.90 16 18 C -0.08 -2.02 3.16 -10.91 -0.03 -2.05 16 19 H 0.10 2.36 8.13 -2.39 -0.02 2.34 16 20 C -0.12 -2.84 6.33 31.73 0.20 -2.64 16 21 C -0.11 -1.95 6.91 31.93 0.22 -1.73 16 22 C -0.08 -1.48 6.58 31.57 0.21 -1.27 16 23 C -0.13 -2.66 2.26 -52.02 -0.12 -2.78 16 24 C -0.18 -3.83 9.63 30.48 0.29 -3.54 16 25 C -0.15 -2.49 10.23 30.48 0.31 -2.18 16 26 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.04 2.03 7.15 -2.39 -0.02 2.02 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.41 12.57 8.47 -92.71 -0.78 11.79 16 34 H 0.06 1.80 6.92 -2.39 -0.02 1.79 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.96 7.07 -2.39 -0.02 1.94 16 41 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -68.84 346.55 2.01 -66.82 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.20 Total: 24.34 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.49 Total: 1.10 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.66 Total: -116.14 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.84 2.01 -66.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038410392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.113 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds