Wall clock time and date at job start Tue Mar 31 2020 00:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00360 * 2 1 4 4 H 1.48493 * 109.47191 * 239.99777 * 3 2 1 5 5 H 1.48508 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47417 * 119.99308 * 3 2 1 7 7 C 1.38823 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.06319 * 359.95005 * 9 7 2 11 11 C 1.53499 * 87.98327 * 207.15478 * 10 9 7 12 12 C 1.47072 * 136.05335 * 179.97438 * 9 7 2 13 13 H 1.08994 * 113.46694 * 267.68591 * 12 9 7 14 14 C 1.53002 * 113.46551 * 38.06530 * 12 9 7 15 15 N 1.46506 * 109.47035 * 285.49321 * 14 12 9 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.51845 * 108.65154 * 304.09392 * 18 16 15 20 20 C 1.53072 * 110.75043 * 172.39131 * 19 18 16 21 21 C 1.51378 * 108.59637 * 85.74395 * 20 19 18 22 22 C 1.29520 * 120.35782 * 288.08631 * 21 20 19 23 23 C 1.51368 * 120.36433 * 0.02562 * 22 21 20 24 24 C 1.51841 * 108.65136 * 180.02562 * 18 16 15 25 25 H 0.96998 * 120.00213 * 0.02562 * 1 2 3 26 26 H 1.08994 * 113.46741 * 321.93255 * 10 9 7 27 27 H 1.09004 * 113.46703 * 92.31590 * 10 9 7 28 28 H 1.09008 * 114.20323 * 220.34102 * 11 10 9 29 29 H 1.08997 * 114.20857 * 87.52402 * 11 10 9 30 30 H 1.09004 * 109.46930 * 165.49551 * 14 12 9 31 31 H 1.09000 * 109.47312 * 45.49495 * 14 12 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 15 14 12 33 33 H 1.08998 * 108.60361 * 61.98548 * 18 16 15 34 34 H 1.09003 * 109.22572 * 292.73003 * 19 18 16 35 35 H 1.09006 * 109.22197 * 52.06868 * 19 18 16 36 36 H 1.09000 * 109.62348 * 326.01627 * 20 19 18 37 37 H 1.08997 * 109.63342 * 205.48065 * 20 19 18 38 38 H 1.08001 * 119.81813 * 108.10481 * 21 20 19 39 39 H 1.08002 * 119.81623 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.61403 * 312.16159 * 23 22 21 41 41 H 1.09001 * 109.61569 * 191.63581 * 23 22 21 42 42 H 1.08999 * 109.22316 * 307.92481 * 24 18 16 43 43 H 1.09004 * 109.22741 * 67.27164 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.0879 -2.7948 0.0010 11 6 0.3418 -4.0917 0.7007 12 6 1.6797 -3.8155 0.0005 13 1 1.7451 -4.2465 -0.9984 14 6 2.8989 -4.1406 0.8659 15 7 4.1153 -3.6903 0.1847 16 6 5.3187 -3.8726 0.7636 17 8 5.3945 -4.4099 1.8483 18 6 6.5698 -3.4089 0.0633 19 6 6.6235 -4.0518 -1.3113 20 6 7.7740 -3.4708 -2.1372 21 6 9.0383 -4.2359 -1.8089 22 6 9.6207 -4.0769 -0.6631 23 6 9.0444 -3.1245 0.3626 24 6 7.7666 -3.7404 0.9370 25 1 -0.4850 0.8400 -0.0004 26 1 -0.7225 -2.1586 0.6178 27 1 -0.4942 -2.9535 -0.9980 28 1 -0.1733 -4.9838 0.3440 29 1 0.3828 -4.0208 1.7876 30 1 2.9515 -5.2170 1.0297 31 1 2.8099 -3.6309 1.8253 32 1 4.0546 -3.2603 -0.6827 33 1 6.5179 -2.3274 -0.0617 34 1 6.7687 -5.1263 -1.1996 35 1 5.6820 -3.8697 -1.8297 36 1 7.9083 -2.4182 -1.8881 37 1 7.5502 -3.5724 -3.1991 38 1 9.4570 -4.9178 -2.5343 39 1 10.5226 -4.6269 -0.4382 40 1 8.8098 -2.1724 -0.1133 41 1 9.7672 -2.9679 1.1633 42 1 7.5987 -3.3475 1.9397 43 1 7.8826 -4.8229 0.9912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039019720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:20 Heat of formation + Delta-G solvation = 19.696112 kcal Electronic energy + Delta-G solvation = -22190.679470 eV Core-core repulsion = 19044.322399 eV Total energy + Delta-G solvation = -3146.357071 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05669 -38.40174 -37.57099 -34.09008 -32.73771 -32.20848 -31.84260 -28.14835 -27.74439 -25.64619 -23.99249 -23.48545 -22.19678 -21.12155 -19.76153 -19.15900 -18.12122 -17.31660 -16.56450 -16.17292 -15.55848 -15.28895 -14.83648 -14.40886 -14.10172 -13.78350 -13.55456 -13.28438 -13.12316 -13.01920 -12.68857 -12.14302 -11.84731 -11.77182 -11.52705 -11.35363 -11.12115 -10.98795 -10.79509 -10.75865 -10.69097 -10.58996 -10.40186 -10.00006 -9.85831 -9.55410 -9.27023 -9.00720 -8.82879 -8.51660 -6.91937 -5.78833 -3.11416 2.18190 3.00542 3.35986 3.40616 3.42092 3.59246 4.41228 4.52211 4.72528 4.79996 4.97122 5.01503 5.09096 5.20186 5.32828 5.38042 5.42868 5.47376 5.56017 5.62240 5.67415 5.71206 5.80707 5.87403 5.91295 6.02922 6.10444 6.12516 6.17853 6.32760 6.33604 6.40393 6.55675 6.58979 6.72564 6.79643 6.93401 7.20850 7.38164 7.55626 7.94858 7.95703 8.62002 9.00665 9.68123 10.61301 11.38342 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.004927 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.152618 B = 5681.208460 C = 6592.912500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.214 4.214 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.713 5.713 16 C 0.511 3.489 17 O -0.553 6.553 18 C -0.105 4.105 19 C -0.105 4.105 20 C -0.091 4.091 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.093 4.093 24 C -0.092 4.092 25 H 0.254 0.746 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 -8.699 -3.535 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.363 5.363 16 C 0.297 3.703 17 O -0.432 6.432 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.128 4.128 21 C -0.178 4.178 22 C -0.174 4.174 23 C -0.131 4.131 24 C -0.130 4.130 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.237 0.763 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.598 -8.692 -2.750 16.371 hybrid contribution 0.415 1.141 -0.617 1.362 sum 14.013 -7.551 -3.367 16.270 Atomic orbital electron populations 1.69812 1.04975 1.25404 1.56314 1.24770 0.95630 0.97399 1.02537 0.86268 0.78568 0.83455 0.77891 1.21203 1.21527 1.21121 1.18793 0.89948 0.81371 1.44065 0.90296 1.45661 1.02595 0.98558 1.85889 1.22026 0.88707 0.90208 0.96476 1.23659 0.96957 0.99024 1.00375 1.22416 0.92098 0.87753 0.95806 0.93524 1.21784 0.83310 0.98097 0.97157 1.46015 1.06020 1.60853 1.23447 1.20647 0.85046 0.78866 0.85791 1.90650 1.87228 1.43943 1.21363 1.21021 0.93551 1.02248 0.95845 1.21286 0.98737 1.00744 0.93505 1.20828 0.92691 0.99446 0.99861 1.22545 0.97215 1.00459 0.97582 1.22573 0.99581 0.99726 0.95519 1.20863 0.96855 0.97875 0.97467 1.21062 0.91602 1.01784 0.98576 0.93623 0.91004 0.95760 0.92370 0.90218 0.92433 0.91218 0.76299 0.88799 0.91305 0.91068 0.90722 0.91133 0.87691 0.87716 0.90915 0.91318 0.90727 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 11.51 55.49 0.64 -26.17 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.70 10.55 -15.06 -0.16 -5.85 16 8 H 0.08 2.00 7.50 -52.49 -0.39 1.61 16 9 N -0.60 -14.54 3.65 -176.99 -0.65 -15.19 16 10 C 0.15 3.45 7.39 -8.50 -0.06 3.39 16 11 C -0.16 -2.94 8.03 -26.21 -0.21 -3.15 16 12 C 0.13 2.44 4.10 -72.38 -0.30 2.14 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.21 5.52 -4.04 -0.02 2.19 16 15 N -0.71 -12.07 5.13 -60.29 -0.31 -12.38 16 16 C 0.51 8.57 7.14 -10.99 -0.08 8.50 16 17 O -0.55 -11.13 15.76 5.55 0.09 -11.04 16 18 C -0.11 -1.36 2.06 -92.95 -0.19 -1.56 16 19 C -0.10 -1.15 4.87 -27.28 -0.13 -1.28 16 20 C -0.09 -0.87 5.62 -27.51 -0.15 -1.02 16 21 C -0.16 -1.49 9.34 -35.28 -0.33 -1.82 16 22 C -0.16 -1.48 9.34 -35.29 -0.33 -1.81 16 23 C -0.09 -0.93 5.62 -27.54 -0.15 -1.09 16 24 C -0.09 -1.14 4.30 -27.30 -0.12 -1.26 16 25 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.40 6.47 7.38 -40.82 -0.30 6.17 16 33 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 35 H 0.07 0.77 6.99 -51.93 -0.36 0.40 16 36 H 0.07 0.71 6.68 -51.93 -0.35 0.37 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.11 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.07 0.71 6.68 -51.93 -0.35 0.37 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.02 7.77 -51.93 -0.40 0.61 16 43 H 0.07 0.89 7.86 -51.93 -0.41 0.49 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -31.08 339.58 -9.58 -40.66 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.11 Total: 5.13 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.34 Total: -2.90 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.32 Total: -53.73 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.08 -9.58 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039019720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.360 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds