Wall clock time and date at job start Tue Mar 31 2020 00:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00360 * 2 1 4 4 H 1.48493 * 109.47191 * 239.99777 * 3 2 1 5 5 H 1.48508 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47417 * 119.99308 * 3 2 1 7 7 C 1.38823 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.06319 * 359.95005 * 9 7 2 11 11 C 1.53499 * 87.98327 * 207.15478 * 10 9 7 12 12 C 1.47072 * 136.05335 * 179.97438 * 9 7 2 13 13 H 1.08994 * 113.46694 * 267.68591 * 12 9 7 14 14 C 1.53002 * 113.46551 * 38.06530 * 12 9 7 15 15 N 1.46506 * 109.47035 * 285.49321 * 14 12 9 16 16 C 1.34777 * 119.99873 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.51845 * 108.65154 * 304.09392 * 18 16 15 20 20 C 1.53072 * 110.75043 * 172.39131 * 19 18 16 21 21 C 1.51378 * 108.59637 * 85.74395 * 20 19 18 22 22 C 1.29520 * 120.35782 * 288.08631 * 21 20 19 23 23 C 1.51368 * 120.36433 * 0.02562 * 22 21 20 24 24 C 1.51841 * 108.65136 * 180.02562 * 18 16 15 25 25 H 0.96998 * 120.00213 * 0.02562 * 1 2 3 26 26 H 1.08994 * 113.46741 * 321.93255 * 10 9 7 27 27 H 1.09004 * 113.46703 * 92.31590 * 10 9 7 28 28 H 1.09008 * 114.20323 * 220.34102 * 11 10 9 29 29 H 1.08997 * 114.20857 * 87.52402 * 11 10 9 30 30 H 1.09004 * 109.46930 * 165.49551 * 14 12 9 31 31 H 1.09000 * 109.47312 * 45.49495 * 14 12 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 15 14 12 33 33 H 1.08998 * 108.60361 * 61.98548 * 18 16 15 34 34 H 1.09003 * 109.22572 * 292.73003 * 19 18 16 35 35 H 1.09006 * 109.22197 * 52.06868 * 19 18 16 36 36 H 1.09000 * 109.62348 * 326.01627 * 20 19 18 37 37 H 1.08997 * 109.63342 * 205.48065 * 20 19 18 38 38 H 1.08001 * 119.81813 * 108.10481 * 21 20 19 39 39 H 1.08002 * 119.81623 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.61403 * 312.16159 * 23 22 21 41 41 H 1.09001 * 109.61569 * 191.63581 * 23 22 21 42 42 H 1.08999 * 109.22316 * 307.92481 * 24 18 16 43 43 H 1.09004 * 109.22741 * 67.27164 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.0879 -2.7948 0.0010 11 6 0.3418 -4.0917 0.7007 12 6 1.6797 -3.8155 0.0005 13 1 1.7451 -4.2465 -0.9984 14 6 2.8989 -4.1406 0.8659 15 7 4.1153 -3.6903 0.1847 16 6 5.3187 -3.8726 0.7636 17 8 5.3945 -4.4099 1.8483 18 6 6.5698 -3.4089 0.0633 19 6 6.6235 -4.0518 -1.3113 20 6 7.7740 -3.4708 -2.1372 21 6 9.0383 -4.2359 -1.8089 22 6 9.6207 -4.0769 -0.6631 23 6 9.0444 -3.1245 0.3626 24 6 7.7666 -3.7404 0.9370 25 1 -0.4850 0.8400 -0.0004 26 1 -0.7225 -2.1586 0.6178 27 1 -0.4942 -2.9535 -0.9980 28 1 -0.1733 -4.9838 0.3440 29 1 0.3828 -4.0208 1.7876 30 1 2.9515 -5.2170 1.0297 31 1 2.8099 -3.6309 1.8253 32 1 4.0546 -3.2603 -0.6827 33 1 6.5179 -2.3274 -0.0617 34 1 6.7687 -5.1263 -1.1996 35 1 5.6820 -3.8697 -1.8297 36 1 7.9083 -2.4182 -1.8881 37 1 7.5502 -3.5724 -3.1991 38 1 9.4570 -4.9178 -2.5343 39 1 10.5226 -4.6269 -0.4382 40 1 8.8098 -2.1724 -0.1133 41 1 9.7672 -2.9679 1.1633 42 1 7.5987 -3.3475 1.9397 43 1 7.8826 -4.8229 0.9912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039019720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:20 Heat of formation + Delta-G solvation = 1.110557 kcal Electronic energy + Delta-G solvation = -22191.485400 eV Core-core repulsion = 19044.322399 eV Total energy + Delta-G solvation = -3147.163001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30734 -39.94312 -38.70587 -35.55509 -34.25763 -33.62925 -32.70112 -29.97546 -29.27958 -26.64359 -25.38627 -24.85886 -23.67155 -22.32948 -21.17728 -20.69706 -18.88529 -18.80288 -18.03711 -17.28637 -17.09437 -16.80124 -16.24341 -15.72272 -15.55951 -15.28094 -14.86752 -14.56811 -14.34534 -13.99754 -13.85438 -13.50359 -13.28923 -13.11359 -12.93560 -12.69532 -12.62786 -12.59113 -12.34510 -12.14189 -11.84419 -11.75843 -11.63902 -11.53176 -11.21670 -11.15758 -10.83991 -10.65088 -10.00048 -9.85744 -8.88456 -7.86268 -5.18016 1.44531 1.46291 1.47301 1.52614 1.67354 2.26586 2.48658 3.35685 3.43832 3.64017 3.69850 3.84343 3.94505 4.12442 4.15431 4.22877 4.29229 4.34748 4.47683 4.53304 4.61860 4.63318 4.68371 4.72621 4.88016 4.89877 4.93754 5.05174 5.07481 5.10923 5.19495 5.22639 5.30358 5.33401 5.40536 5.50379 5.59880 5.74677 5.83975 5.97818 6.09177 6.59772 6.94481 7.27205 7.65365 8.65178 9.31260 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.004927 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.152618 B = 5681.208460 C = 6592.912500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.208 4.208 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.143 3.857 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.130 3.870 15 N -0.711 5.711 16 C 0.507 3.493 17 O -0.590 6.590 18 C -0.098 4.098 19 C -0.099 4.099 20 C -0.090 4.090 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.089 4.089 24 C -0.088 4.088 25 H 0.245 0.755 26 H 0.035 0.965 27 H 0.023 0.977 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.408 0.592 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.352 -9.701 -4.784 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.336 4.336 8 H 0.105 0.895 9 N -0.355 5.355 10 C 0.017 3.983 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.088 0.912 14 C 0.005 3.995 15 N -0.361 5.361 16 C 0.295 3.705 17 O -0.471 6.471 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.179 4.179 22 C -0.182 4.182 23 C -0.126 4.126 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.243 0.757 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.423 -9.724 -4.022 18.671 hybrid contribution -0.153 1.362 -0.204 1.386 sum 15.270 -8.362 -4.226 17.915 Atomic orbital electron populations 1.70002 1.06351 1.25275 1.58752 1.25534 0.96405 1.00540 1.03842 0.85313 0.77256 0.79621 0.78186 1.19723 1.22509 1.21046 1.19171 0.90565 0.82448 1.41436 0.89486 1.45978 1.03589 1.00010 1.85900 1.22039 0.87826 0.92054 0.96346 1.23485 0.95923 0.98137 0.99881 1.22556 0.92923 0.84812 0.96952 0.91249 1.21569 0.83665 0.98754 0.95547 1.46013 1.05812 1.60763 1.23554 1.21349 0.85917 0.77921 0.85353 1.90631 1.87762 1.45635 1.23061 1.21070 0.91588 1.02592 0.96643 1.21257 0.99768 1.00400 0.92301 1.20832 0.92109 0.99401 1.00346 1.22709 0.96964 1.00430 0.97840 1.22676 1.00229 0.99840 0.95415 1.20820 0.95746 0.98031 0.98029 1.21009 0.92663 1.01222 0.97728 0.94613 0.94681 0.95884 0.88225 0.90448 0.90593 0.94344 0.75654 0.88166 0.91648 0.90707 0.90622 0.89703 0.86300 0.86515 0.90528 0.90345 0.92621 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.15 11.51 21.65 0.25 -56.90 16 2 C -0.07 -3.94 5.50 84.87 0.47 -3.47 16 3 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.21 -11.00 10.55 84.04 0.89 -10.11 16 8 H 0.09 4.33 7.50 -2.91 -0.02 4.31 16 9 N -0.63 -30.13 3.65 -713.86 -2.61 -32.74 16 10 C 0.14 6.52 7.39 83.18 0.61 7.13 16 11 C -0.14 -4.66 8.03 30.93 0.25 -4.42 16 12 C 0.13 4.87 4.10 41.80 0.17 5.04 16 13 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 14 C 0.13 4.56 5.52 86.38 0.48 5.04 16 15 N -0.71 -23.11 5.13 -463.04 -2.38 -25.49 16 16 C 0.51 16.61 7.14 87.66 0.63 17.23 16 17 O -0.59 -23.69 15.76 -3.04 -0.05 -23.73 16 18 C -0.10 -2.40 2.06 -12.30 -0.03 -2.43 16 19 C -0.10 -1.97 4.87 30.24 0.15 -1.82 16 20 C -0.09 -1.46 5.62 30.09 0.17 -1.29 16 21 C -0.16 -2.56 9.34 27.38 0.26 -2.30 16 22 C -0.16 -2.71 9.34 27.37 0.26 -2.45 16 23 C -0.09 -1.62 5.62 30.07 0.17 -1.45 16 24 C -0.09 -2.10 4.30 30.22 0.13 -1.97 16 25 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.03 1.84 7.12 -2.39 -0.02 1.82 16 27 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 30 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 12.36 7.38 -92.71 -0.68 11.68 16 33 H 0.10 2.36 7.89 -2.39 -0.02 2.34 16 34 H 0.06 1.35 7.86 -2.39 -0.02 1.33 16 35 H 0.07 1.43 6.99 -2.38 -0.02 1.41 16 36 H 0.08 1.23 6.68 -2.39 -0.02 1.22 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.12 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.08 1.34 6.68 -2.38 -0.02 1.32 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.52 7.77 -2.39 -0.02 1.50 16 43 H 0.06 1.50 7.86 -2.39 -0.02 1.48 16 Total: -1.00 -67.92 339.58 2.14 -65.78 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.30 Total: 23.19 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 4.59 Total: 2.73 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.74 Total: -115.12 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.92 2.14 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039019720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.893 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds