Wall clock time and date at job start Tue Mar 31 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46696 * 119.99896 * 180.02562 * 9 7 2 11 11 C 1.52871 * 109.21749 * 154.99882 * 10 9 7 12 12 C 1.53207 * 109.85393 * 178.47243 * 11 10 9 13 13 H 1.09130 * 110.65147 * 118.92141 * 12 11 10 14 14 C 1.53344 * 109.06385 * 240.70494 * 12 11 10 15 15 C 1.52812 * 109.87999 * 61.39918 * 14 12 11 16 16 C 1.52820 * 110.68841 * 58.06850 * 15 14 12 17 17 C 1.53354 * 109.83181 * 301.87197 * 16 15 14 18 18 H 1.09115 * 110.55234 * 176.84575 * 17 16 15 19 19 C 1.52882 * 109.19980 * 275.81490 * 10 9 7 20 20 N 1.47505 * 108.27968 * 357.68302 * 12 11 10 21 21 C 1.34802 * 121.93464 * 122.10499 * 20 12 11 22 22 O 1.21281 * 119.99715 * 0.02562 * 21 20 12 23 23 C 1.50697 * 119.99876 * 180.02562 * 21 20 12 24 24 C 1.53000 * 117.49870 * 248.74788 * 23 21 20 25 25 C 1.53003 * 117.49689 * 180.09301 * 23 21 20 26 26 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.09051 * 108.95538 * 35.39847 * 10 9 7 29 29 H 1.09277 * 109.19162 * 298.32588 * 11 10 9 30 30 H 1.08961 * 109.72679 * 57.61683 * 11 10 9 31 31 H 1.09101 * 109.42581 * 181.67496 * 14 12 11 32 32 H 1.09156 * 109.41215 * 301.19446 * 14 12 11 33 33 H 1.09374 * 109.04410 * 177.99507 * 15 14 12 34 34 H 1.08924 * 109.72438 * 296.85451 * 15 14 12 35 35 H 1.09088 * 109.52818 * 62.11715 * 16 15 14 36 36 H 1.09156 * 109.41009 * 181.75029 * 16 15 14 37 37 H 1.08962 * 109.67685 * 302.30889 * 19 10 9 38 38 H 1.09272 * 109.20338 * 61.55266 * 19 10 9 39 39 H 1.08993 * 115.55057 * 34.42029 * 23 21 20 40 40 H 1.09004 * 117.49896 * 0.02562 * 24 23 21 41 41 H 1.08999 * 117.50086 * 145.02043 * 24 23 21 42 42 H 1.08995 * 117.49404 * 214.98198 * 25 23 21 43 43 H 1.09000 * 117.49738 * 359.97132 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0590 -3.6584 -0.0005 11 6 1.1776 -4.7483 0.6096 12 6 1.9158 -6.0905 0.5820 13 1 2.0571 -6.4730 1.5943 14 6 1.1120 -7.0870 -0.2620 15 6 0.9923 -6.5750 -1.6967 16 6 2.3753 -6.3594 -2.3102 17 6 3.1728 -5.3643 -1.4584 18 1 4.1824 -5.2440 -1.8546 19 6 2.4371 -4.0207 -1.4369 20 7 3.2183 -5.8887 -0.0803 21 6 4.3830 -6.1750 0.5350 22 8 4.3797 -6.6126 1.6661 23 6 5.6891 -5.9513 -0.1827 24 6 6.4973 -7.1880 -0.5808 25 6 6.9763 -6.2977 0.5685 26 1 -0.4850 -0.8400 -0.0004 27 1 0.3556 -2.3880 0.0002 28 1 2.9642 -3.5448 0.5969 29 1 0.9453 -4.4850 1.6444 30 1 0.2473 -4.8263 0.0477 31 1 1.6174 -8.0539 -0.2610 32 1 0.1150 -7.2041 0.1668 33 1 0.4482 -7.3118 -2.2944 34 1 0.4357 -5.6387 -1.7077 35 1 2.9078 -7.3105 -2.3521 36 1 2.2658 -5.9648 -3.3220 37 1 1.5376 -4.0814 -2.0489 38 1 3.0898 -3.2443 -1.8435 39 1 5.7146 -5.0951 -0.8566 40 1 6.0840 -8.1634 -0.3240 41 1 7.0547 -7.1452 -1.5165 42 1 7.8485 -5.6694 0.3884 43 1 6.8783 -6.6869 1.5819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039259436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:33 Heat of formation + Delta-G solvation = 1.016901 kcal Electronic energy + Delta-G solvation = -23162.239700 eV Core-core repulsion = 20015.072638 eV Total energy + Delta-G solvation = -3147.167062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.89659 -38.60407 -36.01282 -35.15468 -32.94924 -32.57460 -31.95612 -28.71909 -25.83488 -25.47842 -23.96272 -23.13000 -22.54090 -21.70335 -20.47432 -20.01404 -17.81368 -17.61987 -16.86597 -15.81796 -15.54193 -15.22579 -14.63788 -14.43064 -14.14270 -13.80875 -13.69138 -13.59540 -13.40570 -12.85862 -12.78804 -12.42213 -12.03288 -11.66601 -11.50623 -11.29800 -10.96842 -10.86386 -10.74950 -10.71972 -10.65066 -10.54155 -10.43195 -10.09832 -10.01546 -9.93968 -9.52252 -9.17684 -8.92376 -8.36865 -7.03880 -6.09993 -3.09730 2.60540 3.03038 3.51074 3.54768 3.72043 3.80111 4.41088 4.62556 4.68441 4.75569 4.80919 4.88406 4.91969 5.03780 5.09316 5.23697 5.29402 5.40094 5.43535 5.45443 5.52063 5.64985 5.67629 5.78026 5.83707 5.85159 5.88095 5.96725 6.02737 6.03129 6.11358 6.14086 6.22366 6.25745 6.40809 6.52127 6.74069 6.82896 7.00815 7.64292 7.81195 8.33528 8.75673 9.22681 10.09077 10.24509 11.38396 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.005687 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.480528 B = 4921.984769 C = 5760.782673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.328 4.328 8 H 0.063 0.937 9 N -0.737 5.737 10 C 0.197 3.803 11 C -0.137 4.137 12 C 0.146 3.854 13 H 0.098 0.902 14 C -0.124 4.124 15 C -0.121 4.121 16 C -0.124 4.124 17 C 0.137 3.863 18 H 0.091 0.909 19 C -0.146 4.146 20 N -0.593 5.593 21 C 0.549 3.451 22 O -0.551 6.551 23 C -0.192 4.192 24 C -0.153 4.153 25 C -0.149 4.149 26 H 0.254 0.746 27 H 0.366 0.634 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -16.229 -5.094 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.242 4.242 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.081 0.919 9 N -0.379 5.379 10 C 0.086 3.914 11 C -0.176 4.176 12 C 0.043 3.957 13 H 0.116 0.884 14 C -0.162 4.162 15 C -0.158 4.158 16 C -0.162 4.162 17 C 0.033 3.967 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.325 5.325 21 C 0.338 3.662 22 O -0.430 6.430 23 C -0.213 4.213 24 C -0.191 4.191 25 C -0.186 4.186 26 H 0.066 0.934 27 H 0.199 0.801 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.036 -14.748 -4.466 17.379 hybrid contribution -0.153 -1.538 -0.214 1.560 sum 7.884 -16.286 -4.680 18.690 Atomic orbital electron populations 1.70882 1.06021 1.28372 1.53702 1.25732 0.97046 1.00906 1.00539 0.83269 0.74250 0.75747 0.75841 1.21023 1.22307 1.22313 1.20016 0.91901 0.85798 1.48233 0.91942 1.42511 1.04712 1.00767 1.89871 1.19800 0.94182 0.85044 0.92333 1.22295 0.99201 0.94018 1.02058 1.21458 0.81916 0.95396 0.96952 0.88363 1.21933 1.00146 0.98336 0.95811 1.21470 0.96972 1.01924 0.95469 1.21932 0.96322 0.99090 0.98880 1.21727 0.99965 0.94044 0.80939 0.89063 1.22727 1.00408 0.94039 1.01575 1.48382 1.05282 1.63457 1.15350 1.19513 0.84204 0.76860 0.85641 1.90652 1.87188 1.46577 1.18591 1.22220 0.91397 1.02109 1.05548 1.22903 1.02030 0.94207 0.99956 1.22941 0.95349 1.02323 0.97972 0.93435 0.80133 0.93598 0.91563 0.91273 0.92085 0.90938 0.92271 0.90785 0.92113 0.90891 0.91473 0.91528 0.85761 0.88504 0.87965 0.88011 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.16 13.70 55.49 0.76 -28.40 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 26.05 29.92 -169.99 -5.09 20.96 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.22 9.91 -15.06 -0.15 -9.37 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.74 -18.31 5.11 -53.41 -0.27 -18.59 16 10 C 0.20 3.93 2.50 -67.95 -0.17 3.76 16 11 C -0.14 -2.31 4.90 -26.69 -0.13 -2.44 16 12 C 0.15 2.17 3.47 -67.10 -0.23 1.94 16 13 H 0.10 1.57 7.19 -51.86 -0.37 1.20 16 14 C -0.12 -1.49 5.38 -26.65 -0.14 -1.63 16 15 C -0.12 -1.38 5.36 -26.92 -0.14 -1.53 16 16 C -0.12 -1.38 5.39 -26.64 -0.14 -1.52 16 17 C 0.14 1.82 3.37 -67.09 -0.23 1.60 16 18 H 0.09 1.08 5.83 -51.86 -0.30 0.77 16 19 C -0.15 -2.47 5.00 -26.69 -0.13 -2.60 16 20 N -0.59 -8.76 1.80 -156.33 -0.28 -9.05 16 21 C 0.55 8.68 7.53 -10.98 -0.08 8.60 16 22 O -0.55 -10.46 15.83 5.56 0.09 -10.37 16 23 C -0.19 -2.37 5.11 -91.77 -0.47 -2.84 16 24 C -0.15 -1.49 10.24 -26.70 -0.27 -1.76 16 25 C -0.15 -1.63 10.05 -26.70 -0.27 -1.89 16 26 H 0.25 7.73 6.77 -40.82 -0.28 7.45 16 27 H 0.37 9.36 6.62 -40.82 -0.27 9.09 16 28 H 0.05 1.04 7.82 -51.90 -0.41 0.63 16 29 H 0.07 1.19 8.17 -51.77 -0.42 0.77 16 30 H 0.07 1.10 6.38 -51.95 -0.33 0.77 16 31 H 0.06 0.72 8.15 -51.87 -0.42 0.29 16 32 H 0.07 0.79 8.16 -51.84 -0.42 0.37 16 33 H 0.06 0.58 8.17 -51.72 -0.42 0.16 16 34 H 0.07 0.95 5.23 -51.97 -0.27 0.68 16 35 H 0.06 0.63 8.15 -51.88 -0.42 0.21 16 36 H 0.07 0.74 8.16 -51.84 -0.42 0.32 16 37 H 0.07 1.13 6.37 -51.95 -0.33 0.80 16 38 H 0.07 1.23 8.16 -51.78 -0.42 0.80 16 39 H 0.12 1.42 6.79 -51.93 -0.35 1.07 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 1.32 7.67 -51.93 -0.40 0.92 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -32.76 327.41 -9.27 -42.03 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.75 Total: 9.57 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.66 Total: -11.09 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.21 Total: -56.03 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.09 Total: 20.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.76 -9.27 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039259436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.045 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds