Wall clock time and date at job start Tue Mar 31 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46696 * 119.99896 * 180.02562 * 9 7 2 11 11 C 1.52871 * 109.21749 * 154.99882 * 10 9 7 12 12 C 1.53207 * 109.85393 * 178.47243 * 11 10 9 13 13 H 1.09130 * 110.65147 * 118.92141 * 12 11 10 14 14 C 1.53344 * 109.06385 * 240.70494 * 12 11 10 15 15 C 1.52812 * 109.87999 * 61.39918 * 14 12 11 16 16 C 1.52820 * 110.68841 * 58.06850 * 15 14 12 17 17 C 1.53354 * 109.83181 * 301.87197 * 16 15 14 18 18 H 1.09115 * 110.55234 * 176.84575 * 17 16 15 19 19 C 1.52882 * 109.19980 * 275.81490 * 10 9 7 20 20 N 1.47505 * 108.27968 * 357.68302 * 12 11 10 21 21 C 1.34802 * 121.93464 * 122.10499 * 20 12 11 22 22 O 1.21281 * 119.99715 * 0.02562 * 21 20 12 23 23 C 1.50697 * 119.99876 * 180.02562 * 21 20 12 24 24 C 1.53000 * 117.49870 * 248.74788 * 23 21 20 25 25 C 1.53003 * 117.49689 * 180.09301 * 23 21 20 26 26 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.09051 * 108.95538 * 35.39847 * 10 9 7 29 29 H 1.09277 * 109.19162 * 298.32588 * 11 10 9 30 30 H 1.08961 * 109.72679 * 57.61683 * 11 10 9 31 31 H 1.09101 * 109.42581 * 181.67496 * 14 12 11 32 32 H 1.09156 * 109.41215 * 301.19446 * 14 12 11 33 33 H 1.09374 * 109.04410 * 177.99507 * 15 14 12 34 34 H 1.08924 * 109.72438 * 296.85451 * 15 14 12 35 35 H 1.09088 * 109.52818 * 62.11715 * 16 15 14 36 36 H 1.09156 * 109.41009 * 181.75029 * 16 15 14 37 37 H 1.08962 * 109.67685 * 302.30889 * 19 10 9 38 38 H 1.09272 * 109.20338 * 61.55266 * 19 10 9 39 39 H 1.08993 * 115.55057 * 34.42029 * 23 21 20 40 40 H 1.09004 * 117.49896 * 0.02562 * 24 23 21 41 41 H 1.08999 * 117.50086 * 145.02043 * 24 23 21 42 42 H 1.08995 * 117.49404 * 214.98198 * 25 23 21 43 43 H 1.09000 * 117.49738 * 359.97132 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0590 -3.6584 -0.0005 11 6 1.1776 -4.7483 0.6096 12 6 1.9158 -6.0905 0.5820 13 1 2.0571 -6.4730 1.5943 14 6 1.1120 -7.0870 -0.2620 15 6 0.9923 -6.5750 -1.6967 16 6 2.3753 -6.3594 -2.3102 17 6 3.1728 -5.3643 -1.4584 18 1 4.1824 -5.2440 -1.8546 19 6 2.4371 -4.0207 -1.4369 20 7 3.2183 -5.8887 -0.0803 21 6 4.3830 -6.1750 0.5350 22 8 4.3797 -6.6126 1.6661 23 6 5.6891 -5.9513 -0.1827 24 6 6.4973 -7.1880 -0.5808 25 6 6.9763 -6.2977 0.5685 26 1 -0.4850 -0.8400 -0.0004 27 1 0.3556 -2.3880 0.0002 28 1 2.9642 -3.5448 0.5969 29 1 0.9453 -4.4850 1.6444 30 1 0.2473 -4.8263 0.0477 31 1 1.6174 -8.0539 -0.2610 32 1 0.1150 -7.2041 0.1668 33 1 0.4482 -7.3118 -2.2944 34 1 0.4357 -5.6387 -1.7077 35 1 2.9078 -7.3105 -2.3521 36 1 2.2658 -5.9648 -3.3220 37 1 1.5376 -4.0814 -2.0489 38 1 3.0898 -3.2443 -1.8435 39 1 5.7146 -5.0951 -0.8566 40 1 6.0840 -8.1634 -0.3240 41 1 7.0547 -7.1452 -1.5165 42 1 7.8485 -5.6694 0.3884 43 1 6.8783 -6.6869 1.5819 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039259436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:33 Heat of formation + Delta-G solvation = -18.505952 kcal Electronic energy + Delta-G solvation = -23163.086274 eV Core-core repulsion = 20015.072638 eV Total energy + Delta-G solvation = -3148.013636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10608 -39.78911 -37.09930 -36.90283 -34.15209 -33.98179 -33.50239 -30.52884 -27.07694 -26.76739 -25.48467 -24.70321 -23.33642 -22.88449 -21.90216 -21.13602 -19.55792 -18.91093 -18.31571 -17.14940 -16.85988 -16.26484 -16.20924 -15.72156 -15.57485 -15.35053 -15.05952 -14.82288 -14.60240 -14.25044 -13.95264 -13.62867 -13.45300 -12.90026 -12.71372 -12.64701 -12.45799 -12.34266 -12.04648 -11.95127 -11.91881 -11.76561 -11.58783 -11.48573 -11.37487 -11.29766 -11.17257 -10.93562 -10.74120 -9.61601 -9.13236 -8.40732 -5.34393 1.45257 1.55612 1.65359 1.81917 1.88980 2.68527 2.89231 3.31542 3.39212 3.56411 3.71425 3.79164 3.87180 3.93647 3.96435 3.99700 4.06050 4.16124 4.17772 4.24232 4.35107 4.52844 4.57664 4.62901 4.71493 4.81981 4.84846 4.86891 4.94270 4.96473 5.02651 5.06257 5.15220 5.17533 5.21202 5.30809 5.40420 5.49949 5.56730 5.57876 6.45917 6.48267 7.07621 7.12612 7.97706 8.09625 9.11224 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.005687 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.480528 B = 4921.984769 C = 5760.782673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.102 4.102 3 Si 1.124 2.876 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.328 4.328 8 H 0.059 0.941 9 N -0.750 5.750 10 C 0.196 3.804 11 C -0.127 4.127 12 C 0.146 3.854 13 H 0.081 0.919 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.118 4.118 17 C 0.142 3.858 18 H 0.114 0.886 19 C -0.134 4.134 20 N -0.594 5.594 21 C 0.539 3.461 22 O -0.594 6.594 23 C -0.211 4.211 24 C -0.125 4.125 25 C -0.154 4.154 26 H 0.244 0.756 27 H 0.359 0.641 28 H 0.014 0.986 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -17.620 -7.262 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.293 4.293 3 Si 0.949 3.051 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.459 4.459 8 H 0.077 0.923 9 N -0.391 5.391 10 C 0.087 3.913 11 C -0.166 4.166 12 C 0.042 3.958 13 H 0.099 0.901 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.156 4.156 17 C 0.038 3.962 18 H 0.131 0.869 19 C -0.175 4.175 20 N -0.324 5.324 21 C 0.329 3.671 22 O -0.476 6.476 23 C -0.231 4.231 24 C -0.162 4.162 25 C -0.192 4.192 26 H 0.054 0.946 27 H 0.191 0.809 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.154 0.846 40 H 0.111 0.889 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.484 -16.191 -6.662 19.911 hybrid contribution -0.584 -1.149 0.541 1.398 sum 8.900 -17.339 -6.121 20.429 Atomic orbital electron populations 1.70990 1.07069 1.27850 1.56299 1.27122 0.97117 1.04427 1.00649 0.82671 0.73458 0.71871 0.77072 1.21714 1.20981 1.20026 1.20292 0.91970 0.87108 1.46565 0.92260 1.42692 1.04552 1.01720 1.90173 1.19935 0.92943 0.84178 0.94230 1.22190 0.99467 0.94361 1.00585 1.21401 0.82537 0.94651 0.97222 0.90118 1.21884 1.00174 0.97517 0.95788 1.21486 0.97383 1.01789 0.95214 1.21926 0.95675 0.99103 0.98916 1.21831 1.01194 0.92477 0.80651 0.86851 1.22502 1.00597 0.95882 0.98473 1.48494 1.05052 1.62992 1.15886 1.20211 0.85488 0.76055 0.85326 1.90626 1.87871 1.48652 1.20442 1.22248 0.89961 1.04315 1.06602 1.23034 0.99940 0.92687 1.00527 1.23018 0.95316 1.03289 0.97535 0.94567 0.80873 0.96775 0.93700 0.90056 0.91126 0.89799 0.89732 0.92465 0.90268 0.89165 0.91152 0.93314 0.84630 0.88901 0.84651 0.85789 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.39 13.70 21.65 0.30 -61.09 16 2 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 3 Si 1.12 52.63 29.92 68.60 2.05 54.68 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -18.76 9.91 84.03 0.83 -17.93 16 8 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 9 N -0.75 -38.40 5.11 -322.88 -1.65 -40.05 16 10 C 0.20 8.02 2.50 44.87 0.11 8.14 16 11 C -0.13 -4.41 4.90 30.62 0.15 -4.26 16 12 C 0.15 4.32 3.47 44.98 0.16 4.47 16 13 H 0.08 2.68 7.19 -2.32 -0.02 2.67 16 14 C -0.12 -2.53 5.38 30.65 0.16 -2.37 16 15 C -0.12 -2.40 5.36 30.47 0.16 -2.24 16 16 C -0.12 -2.19 5.39 30.65 0.17 -2.03 16 17 C 0.14 3.47 3.37 44.98 0.15 3.62 16 18 H 0.11 2.32 5.83 -2.33 -0.01 2.31 16 19 C -0.13 -4.43 5.00 30.62 0.15 -4.28 16 20 N -0.59 -17.10 1.80 -766.88 -1.38 -18.48 16 21 C 0.54 16.86 7.53 87.65 0.66 17.52 16 22 O -0.59 -23.12 15.83 -3.03 -0.05 -23.17 16 23 C -0.21 -4.83 5.11 -11.54 -0.06 -4.89 16 24 C -0.12 -2.03 10.24 30.62 0.31 -1.72 16 25 C -0.15 -3.13 10.05 30.62 0.31 -2.82 16 26 H 0.24 15.30 6.77 -92.71 -0.63 14.67 16 27 H 0.36 19.09 6.62 -92.71 -0.61 18.48 16 28 H 0.01 0.66 7.82 -2.36 -0.02 0.65 16 29 H 0.04 1.71 8.17 -2.24 -0.02 1.69 16 30 H 0.08 2.61 6.38 -2.41 -0.02 2.60 16 31 H 0.07 1.46 8.15 -2.33 -0.02 1.44 16 32 H 0.08 1.65 8.16 -2.30 -0.02 1.64 16 33 H 0.08 1.31 8.17 -2.19 -0.02 1.30 16 34 H 0.06 1.34 5.23 -2.43 -0.01 1.33 16 35 H 0.08 1.26 8.15 -2.34 -0.02 1.25 16 36 H 0.09 1.44 8.16 -2.30 -0.02 1.42 16 37 H 0.07 2.30 6.37 -2.41 -0.02 2.28 16 38 H 0.05 1.77 8.16 -2.24 -0.02 1.75 16 39 H 0.14 2.77 6.79 -2.39 -0.02 2.75 16 40 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.12 1.92 8.14 -2.39 -0.02 1.91 16 43 H 0.08 2.11 7.67 -2.39 -0.02 2.09 16 Total: -1.00 -73.55 327.41 3.55 -70.00 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.54 Total: 32.40 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.74 Total: -14.29 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -2.74 Total: -119.61 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.68 kcal Total: -73.55 3.55 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039259436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.492 kcal (2) G-P(sol) polarization free energy of solvation -73.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds