Wall clock time and date at job start Tue Mar 31 2020 00:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47333 * 300.00437 * 3 2 1 6 6 H 1.48503 * 109.47327 * 60.00631 * 3 2 1 7 7 C 1.38812 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 194.08141 * 7 2 1 9 9 N 1.37213 * 119.99819 * 14.08429 * 7 2 1 10 10 C 1.44810 * 119.78200 * 204.77587 * 9 7 2 11 11 C 1.51758 * 112.66331 * 267.08749 * 10 9 7 12 12 C 1.51502 * 113.39876 * 292.13657 * 11 10 9 13 13 H 1.09551 * 110.73235 * 181.41512 * 12 11 10 14 14 C 1.53940 * 108.84077 * 304.04766 * 12 11 10 15 15 C 1.53988 * 104.73792 * 91.34948 * 14 12 11 16 16 C 1.52124 * 105.49721 * 12.51210 * 15 14 12 17 17 H 1.09360 * 108.32052 * 122.26918 * 16 15 14 18 18 C 1.49212 * 119.86015 * 24.55695 * 9 7 2 19 19 N 1.47734 * 109.69726 * 4.26606 * 16 15 14 20 20 C 1.34902 * 127.32288 * 159.71191 * 19 16 15 21 21 O 1.21274 * 119.99795 * 180.02562 * 20 19 16 22 22 C 1.50695 * 119.99598 * 0.02562 * 20 19 16 23 23 C 1.53000 * 109.46700 * 180.02562 * 22 20 19 24 24 C 1.53008 * 117.50208 * 184.99748 * 23 22 20 25 25 C 1.52998 * 60.03394 * 252.47808 * 24 23 22 26 26 H 0.96997 * 119.99942 * 359.97438 * 1 2 3 27 27 H 1.08599 * 109.68494 * 144.81839 * 10 9 7 28 28 H 1.09402 * 108.34009 * 26.81347 * 10 9 7 29 29 H 1.09100 * 108.56027 * 171.32964 * 11 10 9 30 30 H 1.08960 * 108.79616 * 53.44060 * 11 10 9 31 31 H 1.09318 * 110.79673 * 332.08205 * 14 12 11 32 32 H 1.09387 * 110.67345 * 210.37937 * 14 12 11 33 33 H 1.08976 * 110.82787 * 252.72662 * 15 14 12 34 34 H 1.09338 * 110.20243 * 131.26856 * 15 14 12 35 35 H 1.09165 * 109.51714 * 18.72305 * 18 9 7 36 36 H 1.09148 * 109.54715 * 259.18426 * 18 9 7 37 37 H 1.09000 * 109.47585 * 60.00470 * 22 20 19 38 38 H 1.08999 * 109.47167 * 299.99569 * 22 20 19 39 39 H 1.08995 * 115.55412 * 330.66686 * 23 22 20 40 40 H 1.09005 * 117.49370 * 359.97438 * 24 23 22 41 41 H 1.08993 * 117.50211 * 144.97011 * 24 23 22 42 42 H 1.08998 * 117.50585 * 107.49769 * 25 24 23 43 43 H 1.09003 * 117.49616 * 252.52810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0659 -1.2164 0.2270 9 7 1.3551 -2.3724 -0.2902 10 6 1.8740 -3.6295 0.2073 11 6 2.7974 -4.3141 -0.7835 12 6 2.0858 -4.8097 -2.0258 13 1 2.7865 -5.3173 -2.6977 14 6 0.9400 -5.7464 -1.6020 15 6 -0.2866 -4.8262 -1.4612 16 6 0.1188 -3.5075 -2.1022 17 1 -0.5903 -3.2826 -2.9038 18 6 0.1097 -2.3429 -1.1116 19 7 1.4650 -3.6361 -2.6969 20 6 2.0146 -2.8588 -3.6528 21 8 3.1387 -3.0860 -4.0470 22 6 1.2315 -1.7082 -4.2306 23 6 2.0776 -0.9953 -5.2874 24 6 1.5026 0.2777 -5.9119 25 6 1.5686 -1.0128 -6.7310 26 1 -0.4850 0.8400 0.0004 27 1 1.0506 -4.2931 0.4542 28 1 2.4403 -3.4302 1.1220 29 1 3.2679 -5.1651 -0.2889 30 1 3.5765 -3.6125 -1.0799 31 1 1.1678 -6.2319 -0.6494 32 1 0.7607 -6.5077 -2.3668 33 1 -0.5432 -4.6804 -0.4122 34 1 -1.1420 -5.2534 -1.9916 35 1 0.0554 -1.3993 -1.6578 36 1 -0.7606 -2.4268 -0.4584 37 1 0.9759 -1.0072 -3.4360 38 1 0.3181 -2.0850 -4.6906 39 1 3.1558 -1.0376 -5.1335 40 1 0.5214 0.6071 -5.5700 41 1 2.2025 1.0730 -6.1682 42 1 0.6310 -1.5325 -6.9281 43 1 2.3124 -1.0667 -7.5261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039317936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:24 Heat of formation + Delta-G solvation = 16.283902 kcal Electronic energy + Delta-G solvation = -23732.580322 eV Core-core repulsion = 20586.075287 eV Total energy + Delta-G solvation = -3146.505035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12737 -38.05234 -36.47846 -34.56992 -32.75711 -31.24204 -31.01864 -28.76942 -27.02984 -25.40018 -23.94379 -22.20889 -22.09958 -20.95900 -20.10575 -19.19853 -18.14287 -17.13120 -16.19474 -15.54066 -15.37999 -15.10776 -14.43687 -14.00168 -13.73851 -13.66360 -13.24993 -13.04910 -12.91454 -12.46967 -12.19569 -11.99169 -11.65993 -11.48951 -11.32792 -11.16951 -11.08067 -10.87022 -10.82407 -10.67811 -10.39623 -10.11944 -10.07064 -10.05991 -9.83919 -9.64772 -9.38418 -9.15784 -8.48831 -7.92720 -6.71303 -5.80040 -3.19410 3.28899 3.36772 3.45432 3.48833 3.54163 4.07237 4.49449 4.79109 4.96005 4.99698 5.13656 5.15446 5.19884 5.37787 5.44160 5.49967 5.65291 5.70415 5.74233 5.78190 5.81272 5.88204 5.97442 6.05445 6.07134 6.13988 6.23148 6.26754 6.30157 6.40399 6.47510 6.51998 6.61515 6.62135 6.82952 6.85866 7.05509 7.32804 7.50258 7.80415 8.25048 8.42435 8.83294 9.19719 9.86093 10.35687 11.29164 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.010639 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.251899 B = 2631.250959 C = 4306.536588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.003 3.997 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.154 4.154 12 C 0.144 3.856 13 H 0.077 0.923 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.103 3.897 17 H 0.060 0.940 18 C 0.168 3.832 19 N -0.591 5.591 20 C 0.551 3.449 21 O -0.560 6.560 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.181 4.181 25 C -0.183 4.183 26 H 0.252 0.748 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -7.669 -6.838 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.082 0.918 9 N -0.307 5.307 10 C 0.029 3.971 11 C -0.195 4.195 12 C 0.041 3.959 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.157 4.157 16 C -0.002 4.002 17 H 0.078 0.922 18 C 0.042 3.958 19 N -0.324 5.324 20 C 0.340 3.660 21 O -0.440 6.440 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.218 4.218 25 C -0.220 4.220 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.704 -7.563 -7.107 10.517 hybrid contribution 0.394 0.992 0.056 1.069 sum -1.309 -6.571 -7.051 9.727 Atomic orbital electron populations 1.70007 1.04978 1.25164 1.55387 1.24904 0.95330 0.97985 1.01273 0.86294 0.79500 0.84244 0.77284 1.20381 1.21494 1.21799 1.19270 0.91841 0.84565 1.41522 0.91827 1.43943 1.27588 1.01345 1.57845 1.20070 0.95050 0.88230 0.93789 1.22168 1.00508 0.99946 0.96896 1.21575 0.94572 0.86132 0.93660 0.90471 1.22410 0.94987 0.97145 1.01620 1.22070 0.97248 0.94335 1.02088 1.22217 0.83415 0.97648 0.96922 0.92153 1.21636 0.88723 0.94531 0.90880 1.48769 1.16483 1.29747 1.37377 1.19870 0.86309 0.82183 0.77602 1.90605 1.19537 1.71761 1.62080 1.21206 0.97900 0.96457 0.99052 1.22051 1.00580 0.99544 0.92724 1.22971 1.02794 0.91498 1.04574 1.23015 1.02645 1.01588 0.94722 0.93795 0.94678 0.93979 0.92864 0.92063 0.90284 0.91908 0.89923 0.91667 0.90037 0.94431 0.87386 0.89801 0.86620 0.88760 0.88966 0.89164 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.05 10.92 55.49 0.61 -24.45 16 2 C 0.00 0.07 5.00 -17.43 -0.09 -0.02 16 3 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.51 9.57 -14.93 -0.14 -6.66 16 8 H 0.06 1.76 7.87 -52.49 -0.41 1.35 16 9 N -0.59 -13.84 2.68 -172.92 -0.46 -14.31 16 10 C 0.16 3.15 5.26 -5.58 -0.03 3.12 16 11 C -0.15 -2.81 5.11 -28.12 -0.14 -2.96 16 12 C 0.14 2.44 3.59 -66.95 -0.24 2.20 16 13 H 0.08 1.33 8.07 -51.62 -0.42 0.91 16 14 C -0.12 -1.65 5.96 -25.73 -0.15 -1.81 16 15 C -0.12 -1.70 5.70 -26.66 -0.15 -1.85 16 16 C 0.10 1.79 2.58 -67.75 -0.18 1.61 16 17 H 0.06 0.96 7.75 -51.73 -0.40 0.55 16 18 C 0.17 3.64 4.39 -2.59 -0.01 3.63 16 19 N -0.59 -11.05 2.33 -156.40 -0.36 -11.42 16 20 C 0.55 11.12 7.87 -10.93 -0.09 11.03 16 21 O -0.56 -12.81 15.90 5.56 0.09 -12.72 16 22 C -0.11 -1.87 5.09 -27.89 -0.14 -2.01 16 23 C -0.13 -2.15 5.42 -90.57 -0.49 -2.64 16 24 C -0.18 -2.54 10.25 -26.73 -0.27 -2.81 16 25 C -0.18 -2.45 10.18 -26.69 -0.27 -2.72 16 26 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.04 0.64 5.16 -52.15 -0.27 0.38 16 28 H 0.04 0.88 7.97 -51.70 -0.41 0.47 16 29 H 0.05 0.82 8.15 -51.87 -0.42 0.40 16 30 H 0.06 1.33 8.14 -51.95 -0.42 0.90 16 31 H 0.08 0.96 7.63 -51.75 -0.40 0.56 16 32 H 0.06 0.74 8.17 -51.71 -0.42 0.32 16 33 H 0.08 1.23 6.35 -51.94 -0.33 0.90 16 34 H 0.06 0.78 8.17 -51.74 -0.42 0.36 16 35 H 0.08 1.98 5.09 -51.84 -0.26 1.71 16 36 H 0.04 0.87 7.90 -51.85 -0.41 0.46 16 37 H 0.11 2.13 6.77 -51.93 -0.35 1.78 16 38 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 39 H 0.12 2.14 7.30 -51.93 -0.38 1.76 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -30.11 327.68 -9.58 -39.68 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.95 Total: 3.40 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.40 Total: -1.89 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.22 Total: -50.17 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.11 -9.58 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039317936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.966 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds