Wall clock time and date at job start Tue Mar 31 2020 00:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47333 * 300.00437 * 3 2 1 6 6 H 1.48503 * 109.47327 * 60.00631 * 3 2 1 7 7 C 1.38812 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 194.08141 * 7 2 1 9 9 N 1.37213 * 119.99819 * 14.08429 * 7 2 1 10 10 C 1.44810 * 119.78200 * 204.77587 * 9 7 2 11 11 C 1.51758 * 112.66331 * 267.08749 * 10 9 7 12 12 C 1.51502 * 113.39876 * 292.13657 * 11 10 9 13 13 H 1.09551 * 110.73235 * 181.41512 * 12 11 10 14 14 C 1.53940 * 108.84077 * 304.04766 * 12 11 10 15 15 C 1.53988 * 104.73792 * 91.34948 * 14 12 11 16 16 C 1.52124 * 105.49721 * 12.51210 * 15 14 12 17 17 H 1.09360 * 108.32052 * 122.26918 * 16 15 14 18 18 C 1.49212 * 119.86015 * 24.55695 * 9 7 2 19 19 N 1.47734 * 109.69726 * 4.26606 * 16 15 14 20 20 C 1.34902 * 127.32288 * 159.71191 * 19 16 15 21 21 O 1.21274 * 119.99795 * 180.02562 * 20 19 16 22 22 C 1.50695 * 119.99598 * 0.02562 * 20 19 16 23 23 C 1.53000 * 109.46700 * 180.02562 * 22 20 19 24 24 C 1.53008 * 117.50208 * 184.99748 * 23 22 20 25 25 C 1.52998 * 60.03394 * 252.47808 * 24 23 22 26 26 H 0.96997 * 119.99942 * 359.97438 * 1 2 3 27 27 H 1.08599 * 109.68494 * 144.81839 * 10 9 7 28 28 H 1.09402 * 108.34009 * 26.81347 * 10 9 7 29 29 H 1.09100 * 108.56027 * 171.32964 * 11 10 9 30 30 H 1.08960 * 108.79616 * 53.44060 * 11 10 9 31 31 H 1.09318 * 110.79673 * 332.08205 * 14 12 11 32 32 H 1.09387 * 110.67345 * 210.37937 * 14 12 11 33 33 H 1.08976 * 110.82787 * 252.72662 * 15 14 12 34 34 H 1.09338 * 110.20243 * 131.26856 * 15 14 12 35 35 H 1.09165 * 109.51714 * 18.72305 * 18 9 7 36 36 H 1.09148 * 109.54715 * 259.18426 * 18 9 7 37 37 H 1.09000 * 109.47585 * 60.00470 * 22 20 19 38 38 H 1.08999 * 109.47167 * 299.99569 * 22 20 19 39 39 H 1.08995 * 115.55412 * 330.66686 * 23 22 20 40 40 H 1.09005 * 117.49370 * 359.97438 * 24 23 22 41 41 H 1.08993 * 117.50211 * 144.97011 * 24 23 22 42 42 H 1.08998 * 117.50585 * 107.49769 * 25 24 23 43 43 H 1.09003 * 117.49616 * 252.52810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0659 -1.2164 0.2270 9 7 1.3551 -2.3724 -0.2902 10 6 1.8740 -3.6295 0.2073 11 6 2.7974 -4.3141 -0.7835 12 6 2.0858 -4.8097 -2.0258 13 1 2.7865 -5.3173 -2.6977 14 6 0.9400 -5.7464 -1.6020 15 6 -0.2866 -4.8262 -1.4612 16 6 0.1188 -3.5075 -2.1022 17 1 -0.5903 -3.2826 -2.9038 18 6 0.1097 -2.3429 -1.1116 19 7 1.4650 -3.6361 -2.6969 20 6 2.0146 -2.8588 -3.6528 21 8 3.1387 -3.0860 -4.0470 22 6 1.2315 -1.7082 -4.2306 23 6 2.0776 -0.9953 -5.2874 24 6 1.5026 0.2777 -5.9119 25 6 1.5686 -1.0128 -6.7310 26 1 -0.4850 0.8400 0.0004 27 1 1.0506 -4.2931 0.4542 28 1 2.4403 -3.4302 1.1220 29 1 3.2679 -5.1651 -0.2889 30 1 3.5765 -3.6125 -1.0799 31 1 1.1678 -6.2319 -0.6494 32 1 0.7607 -6.5077 -2.3668 33 1 -0.5432 -4.6804 -0.4122 34 1 -1.1420 -5.2534 -1.9916 35 1 0.0554 -1.3993 -1.6578 36 1 -0.7606 -2.4268 -0.4584 37 1 0.9759 -1.0072 -3.4360 38 1 0.3181 -2.0850 -4.6906 39 1 3.1558 -1.0376 -5.1335 40 1 0.5214 0.6071 -5.5700 41 1 2.2025 1.0730 -6.1682 42 1 0.6310 -1.5325 -6.9281 43 1 2.3124 -1.0667 -7.5261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039317936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:23 Heat of formation + Delta-G solvation = -0.200321 kcal Electronic energy + Delta-G solvation = -23733.295131 eV Core-core repulsion = 20586.075287 eV Total energy + Delta-G solvation = -3147.219845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58680 -39.50450 -37.81405 -36.36267 -34.31392 -32.94814 -32.58200 -30.12923 -28.75092 -26.93225 -25.74918 -23.60985 -23.24899 -22.32986 -21.52560 -20.72128 -19.63067 -18.81143 -17.89525 -17.08994 -16.91205 -16.54340 -16.17918 -15.50379 -15.27681 -14.97315 -14.92395 -14.55406 -14.29662 -14.04200 -13.71286 -13.37003 -13.28454 -13.09297 -12.81940 -12.70437 -12.44265 -12.37278 -12.36573 -12.31655 -12.00817 -11.84821 -11.58418 -11.53105 -11.31739 -10.95562 -10.85157 -10.68412 -10.50791 -9.46067 -8.65984 -7.87154 -5.26955 1.38374 1.42643 1.50655 1.72137 2.12674 2.48598 2.89532 3.25545 3.47893 3.69336 3.77250 3.80436 3.90716 4.01334 4.09919 4.16351 4.19998 4.30543 4.40048 4.48791 4.61670 4.67018 4.71991 4.74815 4.75943 4.86409 4.97921 4.99608 5.04946 5.09845 5.13127 5.22667 5.23606 5.28403 5.30838 5.39819 5.54285 5.59991 5.73002 5.74860 6.38774 6.75225 7.17808 7.28852 7.92825 8.35219 9.18661 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.010639 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.251899 B = 2631.250959 C = 4306.536588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.253 4.253 8 H 0.044 0.956 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.143 4.143 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.107 3.893 17 H 0.081 0.919 18 C 0.177 3.823 19 N -0.594 5.594 20 C 0.538 3.462 21 O -0.596 6.596 22 C -0.095 4.095 23 C -0.164 4.164 24 C -0.174 4.174 25 C -0.158 4.158 26 H 0.250 0.750 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.087 0.913 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.021 0.979 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -9.446 -7.826 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.231 4.231 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.062 0.938 9 N -0.323 5.323 10 C 0.028 3.972 11 C -0.184 4.184 12 C 0.032 3.968 13 H 0.092 0.908 14 C -0.148 4.148 15 C -0.152 4.152 16 C 0.002 3.998 17 H 0.099 0.901 18 C 0.052 3.948 19 N -0.325 5.325 20 C 0.329 3.671 21 O -0.479 6.479 22 C -0.134 4.134 23 C -0.183 4.183 24 C -0.211 4.211 25 C -0.195 4.195 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.105 0.895 30 H 0.034 0.966 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.144 -9.369 -8.079 12.764 hybrid contribution 0.894 1.540 0.406 1.826 sum -2.250 -7.829 -7.672 11.190 Atomic orbital electron populations 1.70107 1.05554 1.25349 1.56104 1.25375 0.96039 0.99957 1.01750 0.85548 0.78215 0.81625 0.77163 1.20914 1.21328 1.21492 1.19327 0.91306 0.86372 1.41316 0.93775 1.44141 1.27956 1.01564 1.58626 1.20213 0.95946 0.87486 0.93594 1.22037 0.99015 0.99849 0.97510 1.21805 0.96133 0.86329 0.92531 0.90766 1.22398 0.92388 0.96508 1.03545 1.22075 0.98789 0.92406 1.01939 1.22196 0.83261 0.97949 0.96399 0.90131 1.21439 0.87191 0.95286 0.90865 1.48928 1.17124 1.29826 1.36659 1.20390 0.86124 0.82709 0.77914 1.90571 1.21011 1.72806 1.63483 1.21107 0.98816 0.94980 0.98539 1.21932 0.98997 1.02434 0.94958 1.23060 1.02945 0.91401 1.03730 1.23124 1.03295 1.00334 0.92700 0.94060 0.91916 0.95537 0.89514 0.96642 0.88224 0.89150 0.90399 0.88138 0.93214 0.96066 0.90199 0.87064 0.89570 0.88163 0.88132 0.87317 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.98 10.92 21.65 0.24 -51.74 16 2 C -0.04 -1.96 5.00 84.86 0.42 -1.54 16 3 Si 0.94 45.96 29.58 68.60 2.03 47.99 16 4 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.25 -14.07 9.57 83.99 0.80 -13.26 16 8 H 0.04 2.57 7.87 -2.91 -0.02 2.55 16 9 N -0.60 -28.92 2.68 -701.01 -1.88 -30.80 16 10 C 0.15 6.16 5.26 86.29 0.45 6.62 16 11 C -0.14 -5.14 5.11 29.70 0.15 -4.99 16 12 C 0.13 4.33 3.59 44.38 0.16 4.49 16 13 H 0.07 2.45 8.07 -2.09 -0.02 2.43 16 14 C -0.11 -2.47 5.96 31.25 0.19 -2.29 16 15 C -0.11 -2.79 5.70 30.64 0.17 -2.61 16 16 C 0.11 3.50 2.58 44.43 0.11 3.62 16 17 H 0.08 2.34 7.75 -2.20 -0.02 2.33 16 18 C 0.18 7.74 4.39 85.82 0.38 8.12 16 19 N -0.59 -21.76 2.33 -767.06 -1.79 -23.55 16 20 C 0.54 22.03 7.87 87.64 0.69 22.71 16 21 O -0.60 -28.13 15.90 -3.01 -0.05 -28.18 16 22 C -0.09 -3.37 5.09 29.85 0.15 -3.21 16 23 C -0.16 -5.47 5.42 -10.76 -0.06 -5.53 16 24 C -0.17 -4.70 10.25 30.60 0.31 -4.39 16 25 C -0.16 -3.92 10.18 30.62 0.31 -3.61 16 26 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.06 2.17 5.16 -2.60 -0.01 2.15 16 28 H 0.03 1.11 7.97 -2.17 -0.02 1.10 16 29 H 0.09 2.51 8.15 -2.33 -0.02 2.49 16 30 H 0.01 0.67 8.14 -2.41 -0.02 0.65 16 31 H 0.10 1.89 7.63 -2.22 -0.02 1.87 16 32 H 0.09 1.62 8.17 -2.18 -0.02 1.60 16 33 H 0.08 2.02 6.35 -2.40 -0.02 2.00 16 34 H 0.10 1.84 8.17 -2.21 -0.02 1.82 16 35 H 0.05 2.48 5.09 -2.30 -0.01 2.47 16 36 H 0.02 0.99 7.90 -2.31 -0.02 0.97 16 37 H 0.08 3.28 6.77 -2.39 -0.02 3.27 16 38 H 0.11 3.20 7.70 -2.39 -0.02 3.18 16 39 H 0.09 3.36 7.30 -2.39 -0.02 3.34 16 40 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.11 2.31 8.03 -2.39 -0.02 2.29 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -68.56 327.68 3.80 -64.76 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.00 Total: 17.41 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.25 Total: 4.11 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.43 Total: -106.09 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.56 3.80 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039317936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -68.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds