Wall clock time and date at job start Tue Mar 31 2020 00:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47246 * 240.00302 * 3 2 1 5 5 H 1.48500 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47103 * 120.00061 * 3 2 1 7 7 C 1.38811 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.48384 * 126.56045 * 0.04518 * 9 7 2 11 11 C 1.55465 * 106.97388 * 174.44225 * 10 9 7 12 12 C 1.53437 * 101.67120 * 337.39485 * 11 10 9 13 13 H 1.08996 * 111.14825 * 282.02235 * 12 11 10 14 14 C 1.45019 * 126.55901 * 180.02562 * 9 7 2 15 15 H 1.09002 * 108.70336 * 95.93692 * 14 9 7 16 16 C 1.51081 * 119.19773 * 330.64910 * 14 9 7 17 17 C 1.53966 * 107.29523 * 175.69962 * 16 14 9 18 18 C 1.52724 * 111.09000 * 57.76051 * 17 16 14 19 19 N 1.45719 * 116.37306 * 152.73004 * 12 11 10 20 20 C 1.34779 * 122.22796 * 9.92651 * 19 12 11 21 21 O 1.21280 * 120.00016 * 359.97438 * 20 19 12 22 22 C 1.50700 * 120.00112 * 180.02562 * 20 19 12 23 23 C 1.53780 * 113.61107 * 279.13189 * 22 20 19 24 24 C 1.53957 * 87.01986 * 220.05144 * 23 22 20 25 25 C 1.53774 * 87.11034 * 25.36259 * 24 23 22 26 26 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.95718 * 293.82024 * 10 9 7 28 28 H 1.09000 * 109.95912 * 55.01896 * 10 9 7 29 29 H 1.08996 * 110.99419 * 95.49200 * 11 10 9 30 30 H 1.08998 * 110.98474 * 219.27011 * 11 10 9 31 31 H 1.08993 * 109.88782 * 296.20077 * 16 14 9 32 32 H 1.09001 * 109.87793 * 57.28475 * 16 14 9 33 33 H 1.09000 * 109.53953 * 297.20430 * 17 16 14 34 34 H 1.08992 * 108.98399 * 177.95716 * 17 16 14 35 35 H 1.08994 * 109.15814 * 190.74821 * 18 17 16 36 36 H 1.09004 * 109.15757 * 71.55921 * 18 17 16 37 37 H 1.08996 * 112.85335 * 50.33293 * 22 20 19 38 38 H 1.09004 * 113.61815 * 334.56747 * 23 22 20 39 39 H 1.09001 * 113.61246 * 105.47096 * 23 22 20 40 40 H 1.09003 * 113.53494 * 270.80887 * 24 23 22 41 41 H 1.09001 * 113.74209 * 139.94430 * 24 23 22 42 42 H 1.09002 * 113.61640 * 220.08999 * 25 24 23 43 43 H 1.09004 * 113.69283 * 89.20318 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 -0.0009 11 6 -0.4301 -4.0798 -0.1448 12 6 0.8716 -4.5770 -0.7871 13 1 0.8958 -4.3502 -1.8530 14 6 1.9026 -3.7185 -0.0005 15 1 1.9437 -4.0817 1.0264 16 6 3.2505 -3.9373 -0.6470 17 6 3.6457 -5.4041 -0.3962 18 6 2.5929 -6.3599 -0.9535 19 7 1.2348 -5.9635 -0.5242 20 6 0.3890 -6.8275 0.0714 21 8 -0.7163 -6.4592 0.4084 22 6 0.8171 -8.2509 0.3197 23 6 0.6900 -9.1569 -0.9164 24 6 0.1795 -10.2517 0.0381 25 6 -0.2731 -9.1171 0.9723 26 1 -0.4850 0.8400 0.0004 27 1 -0.5656 -2.1889 0.9362 28 1 -0.5849 -2.0168 -0.8406 29 1 -0.5857 -4.5419 0.8300 30 1 -1.2825 -4.2588 -0.8000 31 1 3.1871 -3.7314 -1.7154 32 1 3.9927 -3.2854 -0.1863 33 1 3.7506 -5.5754 0.6751 34 1 4.6002 -5.6024 -0.8836 35 1 2.8010 -7.3686 -0.5969 36 1 2.6408 -6.3493 -2.0425 37 1 1.7855 -8.3214 0.8150 38 1 -0.0592 -8.8172 -1.6316 39 1 1.6456 -9.3945 -1.3837 40 1 0.9740 -10.8703 0.4555 41 1 -0.6448 -10.8382 -0.3676 42 1 -0.0939 -9.3228 2.0277 43 1 -1.2860 -8.7657 0.7757 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049275733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:06 Heat of formation + Delta-G solvation = 18.996100 kcal Electronic energy + Delta-G solvation = -23063.507690 eV Core-core repulsion = 19917.120265 eV Total energy + Delta-G solvation = -3146.387425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58440 -38.72305 -36.82366 -35.36108 -32.56002 -32.12441 -29.10070 -28.23455 -26.79290 -25.74046 -24.44287 -24.06691 -21.46194 -21.11365 -19.93161 -19.42354 -18.70057 -16.95462 -16.34649 -15.79947 -15.44494 -14.87009 -14.62657 -14.52442 -14.06539 -13.85126 -13.44915 -12.96783 -12.85826 -12.56457 -12.42308 -12.20739 -12.01579 -11.83988 -11.52942 -11.23382 -11.04016 -10.81602 -10.71955 -10.59130 -10.53259 -10.48850 -10.31789 -10.08722 -9.93973 -9.79774 -9.58004 -8.87697 -8.54350 -8.15211 -6.79423 -5.66688 -3.01038 2.88247 3.24727 3.42441 3.46607 3.48194 4.40685 4.47770 4.52324 4.55351 4.68880 4.81506 5.02020 5.12672 5.30769 5.38620 5.44262 5.48719 5.49916 5.63819 5.65483 5.70020 5.71313 5.80158 5.86036 5.90787 5.98757 6.04495 6.11946 6.28966 6.31128 6.33523 6.43367 6.60440 6.75798 6.84156 6.93881 7.24160 7.61515 7.69403 7.79834 7.88219 8.28678 8.52864 9.22661 9.86647 10.55412 11.45248 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034748 B = 0.004691 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.596993 B = 5968.048892 C = 6563.671081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.115 3.885 13 H 0.078 0.922 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.112 3.888 19 N -0.598 5.598 20 C 0.523 3.477 21 O -0.533 6.533 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.142 4.142 25 C -0.118 4.118 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 -19.070 -2.214 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.167 4.167 12 C 0.010 3.990 13 H 0.096 0.904 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.011 4.011 19 N -0.331 5.331 20 C 0.311 3.689 21 O -0.410 6.410 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.179 4.179 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.187 -18.619 -2.015 19.190 hybrid contribution 0.682 1.007 -0.031 1.216 sum 4.868 -17.612 -2.046 18.387 Atomic orbital electron populations 1.69939 1.04884 1.25140 1.56752 1.24800 0.95655 0.97591 1.02284 0.86232 0.78470 0.83410 0.77826 1.21203 1.21614 1.21236 1.18943 0.90287 0.82267 1.44029 0.90451 1.44075 1.01806 0.99322 1.86542 1.21748 0.83608 0.88874 1.01027 1.22950 0.94594 0.97799 1.01386 1.22388 0.98667 0.78842 0.99087 0.90419 1.20764 0.91494 0.87203 0.95612 0.96561 1.21456 0.98561 0.94214 1.01217 1.21938 0.97653 0.95805 1.01469 1.21684 0.81765 0.98263 0.99365 1.48007 1.14287 1.11305 1.59486 1.20360 0.84666 0.86629 0.77213 1.90682 1.21155 1.77858 1.51315 1.22794 1.01384 0.91771 1.00032 1.22847 1.01948 0.95599 0.95622 1.22858 1.01050 0.96359 0.97679 1.22785 0.99317 0.94514 0.98915 0.93693 0.94342 0.92601 0.90056 0.92232 0.91637 0.91715 0.91806 0.90998 0.90414 0.91713 0.87361 0.89737 0.90910 0.90099 0.91152 0.91232 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.55 10.46 55.49 0.58 -26.97 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.34 9.95 -15.06 -0.15 -6.49 16 8 H 0.08 2.06 7.34 -52.49 -0.39 1.68 16 9 N -0.59 -15.45 3.35 -163.27 -0.55 -15.99 16 10 C 0.17 4.44 5.47 -1.69 -0.01 4.43 16 11 C -0.13 -2.81 5.01 -25.20 -0.13 -2.94 16 12 C 0.11 2.22 3.31 -66.78 -0.22 2.00 16 13 H 0.08 1.54 8.13 -51.93 -0.42 1.11 16 14 C 0.16 3.36 2.60 -68.35 -0.18 3.19 16 15 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 16 C -0.12 -2.00 5.42 -27.19 -0.15 -2.14 16 17 C -0.13 -1.64 5.94 -26.37 -0.16 -1.79 16 18 C 0.11 1.32 6.31 -3.44 -0.02 1.30 16 19 N -0.60 -9.42 2.91 -163.97 -0.48 -9.90 16 20 C 0.52 8.30 7.22 -10.98 -0.08 8.22 16 21 O -0.53 -10.43 12.74 5.56 0.07 -10.36 16 22 C -0.14 -1.55 2.78 -90.96 -0.25 -1.81 16 23 C -0.12 -1.11 7.50 -25.83 -0.19 -1.30 16 24 C -0.14 -1.15 8.09 -25.83 -0.21 -1.36 16 25 C -0.12 -1.25 7.40 -25.92 -0.19 -1.44 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 28 H 0.06 1.56 7.18 -51.93 -0.37 1.19 16 29 H 0.08 1.87 6.21 -51.93 -0.32 1.55 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.04 7.37 -51.93 -0.38 0.66 16 38 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.19 7.45 -51.93 -0.39 0.80 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -32.12 325.65 -9.68 -41.81 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.16 Total: -0.30 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.03 Total: -0.43 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.44 Total: -52.86 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.12 -9.68 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049275733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.804 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds