Wall clock time and date at job start Tue Mar 31 2020 00:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99767 * 2 1 4 4 H 1.48497 * 109.47246 * 240.00302 * 3 2 1 5 5 H 1.48500 * 109.46753 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47103 * 120.00061 * 3 2 1 7 7 C 1.38811 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.48384 * 126.56045 * 0.04518 * 9 7 2 11 11 C 1.55465 * 106.97388 * 174.44225 * 10 9 7 12 12 C 1.53437 * 101.67120 * 337.39485 * 11 10 9 13 13 H 1.08996 * 111.14825 * 282.02235 * 12 11 10 14 14 C 1.45019 * 126.55901 * 180.02562 * 9 7 2 15 15 H 1.09002 * 108.70336 * 95.93692 * 14 9 7 16 16 C 1.51081 * 119.19773 * 330.64910 * 14 9 7 17 17 C 1.53966 * 107.29523 * 175.69962 * 16 14 9 18 18 C 1.52724 * 111.09000 * 57.76051 * 17 16 14 19 19 N 1.45719 * 116.37306 * 152.73004 * 12 11 10 20 20 C 1.34779 * 122.22796 * 9.92651 * 19 12 11 21 21 O 1.21280 * 120.00016 * 359.97438 * 20 19 12 22 22 C 1.50700 * 120.00112 * 180.02562 * 20 19 12 23 23 C 1.53780 * 113.61107 * 279.13189 * 22 20 19 24 24 C 1.53957 * 87.01986 * 220.05144 * 23 22 20 25 25 C 1.53774 * 87.11034 * 25.36259 * 24 23 22 26 26 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.95718 * 293.82024 * 10 9 7 28 28 H 1.09000 * 109.95912 * 55.01896 * 10 9 7 29 29 H 1.08996 * 110.99419 * 95.49200 * 11 10 9 30 30 H 1.08998 * 110.98474 * 219.27011 * 11 10 9 31 31 H 1.08993 * 109.88782 * 296.20077 * 16 14 9 32 32 H 1.09001 * 109.87793 * 57.28475 * 16 14 9 33 33 H 1.09000 * 109.53953 * 297.20430 * 17 16 14 34 34 H 1.08992 * 108.98399 * 177.95716 * 17 16 14 35 35 H 1.08994 * 109.15814 * 190.74821 * 18 17 16 36 36 H 1.09004 * 109.15757 * 71.55921 * 18 17 16 37 37 H 1.08996 * 112.85335 * 50.33293 * 22 20 19 38 38 H 1.09004 * 113.61815 * 334.56747 * 23 22 20 39 39 H 1.09001 * 113.61246 * 105.47096 * 23 22 20 40 40 H 1.09003 * 113.53494 * 270.80887 * 24 23 22 41 41 H 1.09001 * 113.74209 * 139.94430 * 24 23 22 42 42 H 1.09002 * 113.61640 * 220.08999 * 25 24 23 43 43 H 1.09004 * 113.69283 * 89.20318 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5577 -0.0009 11 6 -0.4301 -4.0798 -0.1448 12 6 0.8716 -4.5770 -0.7871 13 1 0.8958 -4.3502 -1.8530 14 6 1.9026 -3.7185 -0.0005 15 1 1.9437 -4.0817 1.0264 16 6 3.2505 -3.9373 -0.6470 17 6 3.6457 -5.4041 -0.3962 18 6 2.5929 -6.3599 -0.9535 19 7 1.2348 -5.9635 -0.5242 20 6 0.3890 -6.8275 0.0714 21 8 -0.7163 -6.4592 0.4084 22 6 0.8171 -8.2509 0.3197 23 6 0.6900 -9.1569 -0.9164 24 6 0.1795 -10.2517 0.0381 25 6 -0.2731 -9.1171 0.9723 26 1 -0.4850 0.8400 0.0004 27 1 -0.5656 -2.1889 0.9362 28 1 -0.5849 -2.0168 -0.8406 29 1 -0.5857 -4.5419 0.8300 30 1 -1.2825 -4.2588 -0.8000 31 1 3.1871 -3.7314 -1.7154 32 1 3.9927 -3.2854 -0.1863 33 1 3.7506 -5.5754 0.6751 34 1 4.6002 -5.6024 -0.8836 35 1 2.8010 -7.3686 -0.5969 36 1 2.6408 -6.3493 -2.0425 37 1 1.7855 -8.3214 0.8150 38 1 -0.0592 -8.8172 -1.6316 39 1 1.6456 -9.3945 -1.3837 40 1 0.9740 -10.8703 0.4555 41 1 -0.6448 -10.8382 -0.3676 42 1 -0.0939 -9.3228 2.0277 43 1 -1.2860 -8.7657 0.7757 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049275733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:05 Heat of formation + Delta-G solvation = -0.738555 kcal Electronic energy + Delta-G solvation = -23064.363449 eV Core-core repulsion = 19917.120265 eV Total energy + Delta-G solvation = -3147.243184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85051 -39.98086 -38.01483 -36.91399 -34.25918 -33.80613 -30.98447 -29.75089 -27.89960 -26.49149 -26.33965 -25.43260 -22.85178 -22.58317 -21.57380 -20.67959 -19.77628 -18.65403 -17.65803 -17.21073 -16.80257 -16.45030 -16.04927 -15.79136 -15.55583 -15.26017 -14.99390 -14.34702 -14.16771 -14.06948 -13.56861 -13.39256 -13.34846 -13.17294 -12.93389 -12.86418 -12.68637 -12.32787 -12.12959 -11.95407 -11.87221 -11.78600 -11.71464 -11.57618 -11.41129 -11.33937 -11.22527 -10.76036 -10.21665 -9.51891 -8.92913 -7.85084 -5.22654 1.44623 1.48855 1.55082 1.68961 2.02997 2.49988 3.33258 3.34392 3.54427 3.67490 3.74780 3.93304 3.97199 3.97958 4.03291 4.11163 4.22513 4.31075 4.34461 4.55032 4.58283 4.68713 4.72665 4.80536 4.86361 4.91284 4.92668 5.03166 5.07313 5.10707 5.14797 5.15560 5.25062 5.27805 5.43928 5.46829 5.55803 5.57943 5.63521 5.72457 6.16421 6.59472 7.03553 7.29213 7.74087 8.44662 9.26655 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034748 B = 0.004691 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.596993 B = 5968.048892 C = 6563.671081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.236 4.236 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.112 4.112 12 C 0.130 3.870 13 H 0.077 0.923 14 C 0.153 3.847 15 H -0.003 1.003 16 C -0.112 4.112 17 C -0.120 4.120 18 C 0.106 3.894 19 N -0.599 5.599 20 C 0.513 3.487 21 O -0.582 6.582 22 C -0.134 4.134 23 C -0.116 4.116 24 C -0.126 4.126 25 C -0.129 4.129 26 H 0.246 0.754 27 H -0.003 1.003 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.137 0.863 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.139 -21.937 -3.131 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.365 4.365 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.057 3.943 11 C -0.150 4.150 12 C 0.024 3.976 13 H 0.095 0.905 14 C 0.044 3.956 15 H 0.015 0.985 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.015 4.015 19 N -0.331 5.331 20 C 0.303 3.697 21 O -0.462 6.462 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.163 4.163 25 C -0.167 4.167 26 H 0.055 0.945 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.529 -21.542 -2.944 23.009 hybrid contribution -0.378 1.876 0.309 1.939 sum 7.151 -19.666 -2.635 21.091 Atomic orbital electron populations 1.70183 1.06603 1.25381 1.58319 1.25728 0.96535 1.01286 1.02661 0.85113 0.77068 0.78531 0.78384 1.19720 1.22332 1.20329 1.19397 0.91041 0.83167 1.42855 0.89277 1.44345 1.01955 1.00997 1.86419 1.21440 0.84069 0.91181 0.97587 1.22664 0.96425 0.94828 1.01113 1.21962 0.95916 0.81456 0.98256 0.90489 1.20951 0.94515 0.84891 0.95210 0.98539 1.21446 0.95359 0.97811 1.00439 1.21925 0.99649 0.92155 1.02148 1.22062 0.78828 0.99892 1.00692 1.48146 1.16210 1.09335 1.59440 1.21353 0.83975 0.88388 0.75935 1.90661 1.23414 1.79039 1.53127 1.22957 1.02525 0.88093 1.01907 1.22855 1.03113 0.94712 0.94644 1.22836 1.01760 0.95590 0.96142 1.22821 0.97833 0.96025 1.00055 0.94465 0.98430 0.95612 0.91339 0.92141 0.91655 0.92764 0.91820 0.86963 0.86352 0.89795 0.84506 0.91433 0.87792 0.87541 0.90713 0.90615 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.17 10.46 21.65 0.23 -59.94 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 3 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.24 -13.48 9.95 84.03 0.84 -12.65 16 8 H 0.09 4.75 7.34 -2.91 -0.02 4.73 16 9 N -0.61 -33.18 3.35 -670.45 -2.25 -35.43 16 10 C 0.18 10.10 5.47 86.86 0.48 10.58 16 11 C -0.11 -5.16 5.01 31.59 0.16 -5.00 16 12 C 0.13 5.07 3.31 46.15 0.15 5.22 16 13 H 0.08 3.03 8.13 -2.39 -0.02 3.01 16 14 C 0.15 6.53 2.60 45.51 0.12 6.65 16 15 H 0.00 -0.13 8.03 -2.39 -0.02 -0.15 16 16 C -0.11 -3.66 5.42 30.30 0.16 -3.50 16 17 C -0.12 -2.52 5.94 30.83 0.18 -2.34 16 18 C 0.11 2.01 6.31 86.03 0.54 2.55 16 19 N -0.60 -17.78 2.91 -791.07 -2.30 -20.09 16 20 C 0.51 15.70 7.22 87.66 0.63 16.33 16 21 O -0.58 -23.41 12.74 -3.03 -0.04 -23.45 16 22 C -0.13 -2.57 2.78 -11.01 -0.03 -2.61 16 23 C -0.12 -1.62 7.50 31.18 0.23 -1.39 16 24 C -0.13 -1.56 8.09 31.18 0.25 -1.31 16 25 C -0.13 -2.52 7.40 31.12 0.23 -2.29 16 26 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.00 -0.16 7.81 -2.38 -0.02 -0.18 16 28 H 0.03 1.55 7.18 -2.39 -0.02 1.53 16 29 H 0.07 3.35 6.21 -2.39 -0.01 3.34 16 30 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.06 2.13 8.11 -2.39 -0.02 2.11 16 32 H 0.05 1.87 7.73 -2.39 -0.02 1.85 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.37 5.93 -2.39 -0.01 1.35 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.14 1.89 7.37 -2.39 -0.02 1.88 16 38 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.67 7.45 -2.39 -0.02 1.65 16 Total: -1.00 -76.27 325.65 3.06 -73.21 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.98 Total: 10.39 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.41 Total: 6.64 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.32 Total: -115.45 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.27 3.06 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049275733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.473 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds