Wall clock time and date at job start Tue Mar 31 2020 00:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48504 * 109.47212 * 240.00209 * 3 2 1 5 5 H 1.48500 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47036 * 120.00024 * 3 2 1 7 7 C 1.38818 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.48376 * 126.56623 * 359.97438 * 9 7 2 11 11 C 1.55471 * 106.97676 * 185.52772 * 10 9 7 12 12 C 1.53428 * 101.67224 * 22.59308 * 11 10 9 13 13 H 1.09000 * 111.74784 * 78.23172 * 12 11 10 14 14 C 1.45024 * 126.55640 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.26029 * 263.90494 * 14 9 7 16 16 C 1.51085 * 119.19746 * 28.78131 * 14 9 7 17 17 C 1.53863 * 107.34553 * 183.88432 * 16 14 9 18 18 C 1.52721 * 111.52252 * 303.06453 * 17 16 14 19 19 N 1.45726 * 116.37824 * 207.27115 * 12 11 10 20 20 C 1.34775 * 122.22562 * 350.08525 * 19 12 11 21 21 O 1.21282 * 119.99791 * 0.02562 * 20 19 12 22 22 C 1.50702 * 120.00047 * 179.97438 * 20 19 12 23 23 C 1.53776 * 113.61330 * 277.49887 * 22 20 19 24 24 C 1.53783 * 87.07951 * 220.01466 * 23 22 20 25 25 C 1.53780 * 113.61537 * 179.97438 * 22 20 19 26 26 H 0.97003 * 120.00053 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.95876 * 304.90270 * 10 9 7 28 28 H 1.08999 * 109.96031 * 66.11045 * 10 9 7 29 29 H 1.09005 * 110.98349 * 264.50254 * 11 10 9 30 30 H 1.08993 * 110.98992 * 140.69740 * 11 10 9 31 31 H 1.08999 * 109.88066 * 64.42398 * 16 14 9 32 32 H 1.09004 * 109.87790 * 303.34603 * 16 14 9 33 33 H 1.09001 * 109.07115 * 182.54334 * 17 16 14 34 34 H 1.09003 * 109.06919 * 63.59535 * 17 16 14 35 35 H 1.08998 * 109.16430 * 288.13347 * 18 17 16 36 36 H 1.09002 * 109.15861 * 168.94340 * 18 17 16 37 37 H 1.09004 * 112.84518 * 48.80864 * 22 20 19 38 38 H 1.08992 * 113.61377 * 334.56746 * 23 22 20 39 39 H 1.09004 * 113.61249 * 105.47068 * 23 22 20 40 40 H 1.08997 * 113.61774 * 270.88685 * 24 23 22 41 41 H 1.09000 * 113.61108 * 139.97947 * 24 23 22 42 42 H 1.08995 * 113.61829 * 254.53459 * 25 22 20 43 43 H 1.09000 * 113.60927 * 25.43659 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1485 -2.5576 -0.0017 11 6 -0.4304 -4.0800 0.1401 12 6 0.8712 -4.5781 0.7819 13 1 0.9037 -4.3615 1.8496 14 6 1.9024 -3.7186 -0.0028 15 1 1.9374 -4.0748 -1.0324 16 6 3.2561 -3.9356 0.6320 17 6 3.6451 -5.4048 0.3922 18 6 2.5919 -6.3611 0.9478 19 7 1.2343 -5.9644 0.5172 20 6 0.3886 -6.8274 -0.0798 21 8 -0.7166 -6.4585 -0.4165 22 6 0.8167 -8.2506 -0.3298 23 6 1.6583 -8.4256 -1.6049 24 6 0.8751 -9.7264 -1.8488 25 6 -0.2605 -9.1062 -1.0171 26 1 -0.4850 0.8401 0.0004 27 1 -0.5851 -2.0185 0.8390 28 1 -0.5656 -2.1871 -0.9382 29 1 -0.5859 -4.5407 -0.8354 30 1 -1.2826 -4.2598 0.7954 31 1 3.1997 -3.7370 1.7023 32 1 3.9919 -3.2771 0.1702 33 1 4.5997 -5.6045 0.8790 34 1 3.7507 -5.5748 -0.6793 35 1 2.6391 -6.3517 2.0367 36 1 2.8002 -7.3695 0.5902 37 1 1.2524 -8.7224 0.5509 38 1 1.4758 -7.6584 -2.3572 39 1 2.7189 -8.5846 -1.4096 40 1 1.3279 -10.6024 -1.3842 41 1 0.6127 -9.8885 -2.8942 42 1 -0.7487 -9.8143 -0.3476 43 1 -0.9678 -8.5250 -1.6088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049275736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:08 Heat of formation + Delta-G solvation = 18.774977 kcal Electronic energy + Delta-G solvation = -23145.791676 eV Core-core repulsion = 19999.394662 eV Total energy + Delta-G solvation = -3146.397014 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.58847 -38.70632 -36.82582 -35.36078 -32.56437 -32.12478 -29.10209 -28.23306 -26.78732 -25.72423 -24.45053 -24.06826 -21.46901 -21.07672 -19.91305 -19.56117 -18.53328 -17.01163 -16.32316 -15.84125 -15.23905 -15.02442 -14.62802 -14.53559 -14.07025 -13.83634 -13.36544 -13.19496 -12.67687 -12.49587 -12.44150 -12.26259 -11.99416 -11.81914 -11.52188 -11.21722 -11.04103 -10.81537 -10.69471 -10.61181 -10.50072 -10.47746 -10.34790 -10.08876 -9.94420 -9.80480 -9.57904 -8.87027 -8.54150 -8.15468 -6.79171 -5.66707 -3.00946 2.88170 3.24540 3.42400 3.46567 3.48169 4.42799 4.49539 4.52209 4.57684 4.70920 4.83043 5.01461 5.12738 5.30553 5.40855 5.42048 5.48250 5.52620 5.64184 5.67159 5.72841 5.74217 5.80789 5.86568 5.90842 5.99740 6.04479 6.12747 6.28919 6.31702 6.34614 6.43403 6.60711 6.75961 6.84360 6.93598 7.23603 7.61437 7.69292 7.79955 7.88228 8.28651 8.52849 9.22654 9.86646 10.55455 11.45235 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.004854 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.499725 B = 5767.024703 C = 6277.769862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.115 3.885 13 H 0.078 0.922 14 C 0.159 3.841 15 H 0.016 0.984 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.112 3.888 19 N -0.599 5.599 20 C 0.523 3.477 21 O -0.533 6.533 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.142 4.142 25 C -0.117 4.117 26 H 0.253 0.747 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -18.650 0.709 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.167 4.167 12 C 0.011 3.989 13 H 0.095 0.905 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.011 4.011 19 N -0.332 5.332 20 C 0.311 3.689 21 O -0.410 6.410 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.180 4.180 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.747 -18.200 0.513 18.816 hybrid contribution 0.638 0.973 0.166 1.175 sum 5.385 -17.228 0.679 18.062 Atomic orbital electron populations 1.69943 1.04884 1.25132 1.56757 1.24801 0.95656 0.97590 1.02295 0.86233 0.78470 0.83414 0.77824 1.21232 1.21616 1.21214 1.18941 0.90281 0.82274 1.44018 0.90455 1.44083 1.01805 0.99338 1.86553 1.21744 0.83621 0.88859 1.01025 1.22939 0.94568 0.97790 1.01366 1.22395 0.98654 0.78838 0.99020 0.90458 1.20763 0.91453 0.87208 0.95657 0.96619 1.21425 0.98559 0.94193 1.01229 1.21893 0.97615 0.95739 1.01519 1.21677 0.81792 0.98352 0.99266 1.48029 1.14398 1.11457 1.59292 1.20369 0.84536 0.86858 0.77101 1.90682 1.21077 1.78026 1.51231 1.22797 1.00236 0.93617 0.99340 1.22819 0.98588 0.98352 0.96255 1.22840 0.97491 0.96909 1.00729 1.22798 0.96198 0.97840 0.98681 0.93699 0.92628 0.94328 0.90046 0.92204 0.91831 0.91528 0.91021 0.91851 0.91783 0.90347 0.87466 0.89584 0.90901 0.90119 0.91121 0.91302 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.46 55.49 0.58 -26.95 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.32 9.94 -15.06 -0.15 -6.47 16 8 H 0.08 2.06 7.31 -52.49 -0.38 1.67 16 9 N -0.59 -15.42 3.35 -163.29 -0.55 -15.97 16 10 C 0.17 4.43 5.47 -1.70 -0.01 4.42 16 11 C -0.13 -2.80 5.01 -25.20 -0.13 -2.92 16 12 C 0.12 2.24 3.33 -66.80 -0.22 2.02 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.16 3.35 2.57 -68.36 -0.18 3.18 16 15 H 0.02 0.37 8.06 -51.93 -0.42 -0.04 16 16 C -0.12 -1.99 5.45 -27.25 -0.15 -2.13 16 17 C -0.13 -1.62 5.93 -26.42 -0.16 -1.78 16 18 C 0.11 1.32 6.29 -3.44 -0.02 1.30 16 19 N -0.60 -9.44 2.91 -163.99 -0.48 -9.92 16 20 C 0.52 8.30 7.22 -10.99 -0.08 8.22 16 21 O -0.53 -10.42 12.73 5.56 0.07 -10.35 16 22 C -0.14 -1.55 2.77 -90.96 -0.25 -1.80 16 23 C -0.12 -1.20 7.27 -25.92 -0.19 -1.38 16 24 C -0.14 -1.20 8.08 -25.90 -0.21 -1.41 16 25 C -0.12 -1.25 7.41 -25.90 -0.19 -1.44 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 28 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 29 H 0.08 1.86 6.21 -51.93 -0.32 1.54 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 32 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.71 5.77 -51.93 -0.30 0.41 16 37 H 0.11 0.98 7.57 -51.93 -0.39 0.58 16 38 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 1.22 7.43 -51.93 -0.39 0.83 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -32.06 325.26 -9.68 -41.74 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.16 Total: -0.17 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.03 Total: -0.50 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.44 Total: -52.84 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.06 -9.68 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049275736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.515 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds