Wall clock time and date at job start Tue Mar 31 2020 00:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48504 * 109.47212 * 240.00209 * 3 2 1 5 5 H 1.48500 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47036 * 120.00024 * 3 2 1 7 7 C 1.38818 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.48376 * 126.56623 * 359.97438 * 9 7 2 11 11 C 1.55471 * 106.97676 * 185.52772 * 10 9 7 12 12 C 1.53428 * 101.67224 * 22.59308 * 11 10 9 13 13 H 1.09000 * 111.74784 * 78.23172 * 12 11 10 14 14 C 1.45024 * 126.55640 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.26029 * 263.90494 * 14 9 7 16 16 C 1.51085 * 119.19746 * 28.78131 * 14 9 7 17 17 C 1.53863 * 107.34553 * 183.88432 * 16 14 9 18 18 C 1.52721 * 111.52252 * 303.06453 * 17 16 14 19 19 N 1.45726 * 116.37824 * 207.27115 * 12 11 10 20 20 C 1.34775 * 122.22562 * 350.08525 * 19 12 11 21 21 O 1.21282 * 119.99791 * 0.02562 * 20 19 12 22 22 C 1.50702 * 120.00047 * 179.97438 * 20 19 12 23 23 C 1.53776 * 113.61330 * 277.49887 * 22 20 19 24 24 C 1.53783 * 87.07951 * 220.01466 * 23 22 20 25 25 C 1.53780 * 113.61537 * 179.97438 * 22 20 19 26 26 H 0.97003 * 120.00053 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.95876 * 304.90270 * 10 9 7 28 28 H 1.08999 * 109.96031 * 66.11045 * 10 9 7 29 29 H 1.09005 * 110.98349 * 264.50254 * 11 10 9 30 30 H 1.08993 * 110.98992 * 140.69740 * 11 10 9 31 31 H 1.08999 * 109.88066 * 64.42398 * 16 14 9 32 32 H 1.09004 * 109.87790 * 303.34603 * 16 14 9 33 33 H 1.09001 * 109.07115 * 182.54334 * 17 16 14 34 34 H 1.09003 * 109.06919 * 63.59535 * 17 16 14 35 35 H 1.08998 * 109.16430 * 288.13347 * 18 17 16 36 36 H 1.09002 * 109.15861 * 168.94340 * 18 17 16 37 37 H 1.09004 * 112.84518 * 48.80864 * 22 20 19 38 38 H 1.08992 * 113.61377 * 334.56746 * 23 22 20 39 39 H 1.09004 * 113.61249 * 105.47068 * 23 22 20 40 40 H 1.08997 * 113.61774 * 270.88685 * 24 23 22 41 41 H 1.09000 * 113.61108 * 139.97947 * 24 23 22 42 42 H 1.08995 * 113.61829 * 254.53459 * 25 22 20 43 43 H 1.09000 * 113.60927 * 25.43659 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1485 -2.5576 -0.0017 11 6 -0.4304 -4.0800 0.1401 12 6 0.8712 -4.5781 0.7819 13 1 0.9037 -4.3615 1.8496 14 6 1.9024 -3.7186 -0.0028 15 1 1.9374 -4.0748 -1.0324 16 6 3.2561 -3.9356 0.6320 17 6 3.6451 -5.4048 0.3922 18 6 2.5919 -6.3611 0.9478 19 7 1.2343 -5.9644 0.5172 20 6 0.3886 -6.8274 -0.0798 21 8 -0.7166 -6.4585 -0.4165 22 6 0.8167 -8.2506 -0.3298 23 6 1.6583 -8.4256 -1.6049 24 6 0.8751 -9.7264 -1.8488 25 6 -0.2605 -9.1062 -1.0171 26 1 -0.4850 0.8401 0.0004 27 1 -0.5851 -2.0185 0.8390 28 1 -0.5656 -2.1871 -0.9382 29 1 -0.5859 -4.5407 -0.8354 30 1 -1.2826 -4.2598 0.7954 31 1 3.1997 -3.7370 1.7023 32 1 3.9919 -3.2771 0.1702 33 1 4.5997 -5.6045 0.8790 34 1 3.7507 -5.5748 -0.6793 35 1 2.6391 -6.3517 2.0367 36 1 2.8002 -7.3695 0.5902 37 1 1.2524 -8.7224 0.5509 38 1 1.4758 -7.6584 -2.3572 39 1 2.7189 -8.5846 -1.4096 40 1 1.3279 -10.6024 -1.3842 41 1 0.6127 -9.8885 -2.8942 42 1 -0.7487 -9.8143 -0.3476 43 1 -0.9678 -8.5250 -1.6088 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049275736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:07 Heat of formation + Delta-G solvation = -0.949638 kcal Electronic energy + Delta-G solvation = -23146.647000 eV Core-core repulsion = 19999.394662 eV Total energy + Delta-G solvation = -3147.252337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85666 -39.97652 -38.02777 -36.91319 -34.25777 -33.81230 -30.98602 -29.74868 -27.90489 -26.50738 -26.34542 -25.44297 -22.84308 -22.58409 -21.53964 -20.82932 -19.61067 -18.68102 -17.69165 -17.22634 -16.76021 -16.44340 -16.01761 -15.84521 -15.57425 -15.32296 -14.90681 -14.34682 -14.29173 -13.98790 -13.59542 -13.39027 -13.34862 -13.16498 -12.91938 -12.85702 -12.68397 -12.29164 -12.13186 -11.97640 -11.92074 -11.76701 -11.71862 -11.56916 -11.41945 -11.36278 -11.22852 -10.76125 -10.20796 -9.52114 -8.92535 -7.85024 -5.22461 1.44637 1.48839 1.55068 1.68606 2.02747 2.50089 3.33323 3.34568 3.54523 3.66877 3.75848 3.90319 3.97074 4.00307 4.03693 4.10583 4.22419 4.30310 4.34480 4.55156 4.58332 4.68551 4.72171 4.80006 4.84434 4.89707 4.94049 5.03036 5.06420 5.10349 5.14268 5.16066 5.23997 5.28310 5.43773 5.46984 5.55967 5.57698 5.63581 5.72104 6.16439 6.59545 7.03629 7.29151 7.74180 8.44805 9.26737 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031086 B = 0.004854 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.499725 B = 5767.024703 C = 6277.769862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.236 4.236 8 H 0.090 0.910 9 N -0.613 5.613 10 C 0.183 3.817 11 C -0.111 4.111 12 C 0.130 3.870 13 H 0.078 0.922 14 C 0.153 3.847 15 H -0.004 1.004 16 C -0.112 4.112 17 C -0.119 4.119 18 C 0.106 3.894 19 N -0.600 5.600 20 C 0.513 3.487 21 O -0.582 6.582 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.127 4.127 26 H 0.246 0.754 27 H 0.025 0.975 28 H -0.002 1.002 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.684 -21.594 1.713 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.364 4.364 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.057 3.943 11 C -0.150 4.150 12 C 0.024 3.976 13 H 0.095 0.905 14 C 0.045 3.955 15 H 0.013 0.987 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.015 4.015 19 N -0.332 5.332 20 C 0.303 3.697 21 O -0.462 6.462 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.016 0.984 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.075 -21.199 1.524 22.736 hybrid contribution -0.418 1.864 -0.194 1.921 sum 7.658 -19.334 1.330 20.838 Atomic orbital electron populations 1.70187 1.06605 1.25368 1.58337 1.25727 0.96533 1.01284 1.02680 0.85114 0.77068 0.78539 0.78382 1.20316 1.22338 1.19740 1.19395 0.91035 0.83169 1.42825 0.89277 1.44353 1.01951 1.01015 1.86423 1.21434 0.84085 0.91164 0.97581 1.22652 0.96402 0.94823 1.01090 1.21971 0.95917 0.81456 0.98244 0.90452 1.20948 0.94468 0.84883 0.95195 0.98676 1.21415 0.95338 0.97783 1.00487 1.21880 0.99618 0.92086 1.02198 1.22059 0.78863 0.99963 1.00622 1.48169 1.16332 1.09493 1.59238 1.21367 0.83834 0.88686 0.75792 1.90661 1.23361 1.79223 1.52986 1.22963 1.00973 0.89951 1.01304 1.22825 1.00262 0.98246 0.94536 1.22825 0.95683 0.97120 1.00695 1.22816 0.96503 0.98009 0.99199 0.94476 0.95637 0.98424 0.91348 0.92093 0.91821 0.92589 0.86971 0.91883 0.89800 0.86323 0.83836 0.92296 0.87904 0.87157 0.91052 0.89974 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.18 10.46 21.65 0.23 -59.95 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 3 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.45 9.94 84.04 0.84 -12.62 16 8 H 0.09 4.75 7.31 -2.91 -0.02 4.73 16 9 N -0.61 -33.17 3.35 -670.52 -2.25 -35.42 16 10 C 0.18 10.11 5.47 86.87 0.48 10.59 16 11 C -0.11 -5.14 5.01 31.59 0.16 -4.98 16 12 C 0.13 5.07 3.33 46.14 0.15 5.22 16 13 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 14 C 0.15 6.55 2.57 45.50 0.12 6.67 16 15 H 0.00 -0.20 8.06 -2.39 -0.02 -0.21 16 16 C -0.11 -3.65 5.45 30.26 0.16 -3.49 16 17 C -0.12 -2.50 5.93 30.79 0.18 -2.32 16 18 C 0.11 2.01 6.29 86.03 0.54 2.55 16 19 N -0.60 -17.82 2.91 -791.14 -2.30 -20.12 16 20 C 0.51 15.68 7.22 87.66 0.63 16.32 16 21 O -0.58 -23.41 12.73 -3.04 -0.04 -23.45 16 22 C -0.13 -2.50 2.77 -11.01 -0.03 -2.53 16 23 C -0.12 -1.94 7.27 31.12 0.23 -1.71 16 24 C -0.13 -1.67 8.08 31.13 0.25 -1.42 16 25 C -0.13 -2.46 7.41 31.13 0.23 -2.23 16 26 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.03 1.54 7.19 -2.39 -0.02 1.52 16 28 H 0.00 -0.16 7.81 -2.39 -0.02 -0.17 16 29 H 0.07 3.35 6.21 -2.38 -0.01 3.33 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.06 2.07 8.12 -2.39 -0.02 2.06 16 32 H 0.06 1.93 7.70 -2.39 -0.02 1.91 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.37 5.77 -2.39 -0.01 1.36 16 37 H 0.14 1.76 7.57 -2.39 -0.02 1.74 16 38 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 39 H 0.10 1.06 8.03 -2.38 -0.02 1.04 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.63 7.43 -2.39 -0.02 1.61 16 Total: -1.00 -76.38 325.26 3.05 -73.34 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.98 Total: 10.50 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 4.40 Total: 6.44 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.32 Total: -115.49 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.38 3.05 -73.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049275736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.388 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds