Wall clock time and date at job start Tue Mar 31 2020 00:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47119 * 95.01226 * 3 2 1 5 5 H 1.48505 * 109.47037 * 215.00948 * 3 2 1 6 6 H 1.48494 * 109.47363 * 335.00748 * 3 2 1 7 7 C 1.38814 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00025 * 173.57691 * 7 2 1 9 9 N 1.36939 * 120.00138 * 353.57197 * 7 2 1 10 10 C 1.47123 * 125.76419 * 6.32562 * 9 7 2 11 11 C 1.54589 * 107.23762 * 177.31825 * 10 9 7 12 12 C 1.54419 * 102.53039 * 338.65926 * 11 10 9 13 13 H 1.09004 * 110.71588 * 279.24870 * 12 11 10 14 14 C 1.48208 * 125.76831 * 186.64120 * 9 7 2 15 15 H 1.09002 * 111.52783 * 326.97807 * 14 9 7 16 16 C 1.53006 * 107.11940 * 89.09918 * 14 9 7 17 17 C 1.52740 * 110.79918 * 168.08114 * 16 14 9 18 18 C 1.53461 * 108.43893 * 296.22843 * 17 16 14 19 19 N 1.45117 * 111.61324 * 156.38545 * 12 11 10 20 20 C 1.34781 * 119.57188 * 111.33770 * 19 12 11 21 21 O 1.21287 * 119.99858 * 359.97438 * 20 19 12 22 22 C 1.50695 * 119.99946 * 179.97438 * 20 19 12 23 23 C 1.53782 * 113.61676 * 277.50064 * 22 20 19 24 24 C 1.53781 * 87.08002 * 220.01651 * 23 22 20 25 25 C 1.53784 * 113.61480 * 179.97438 * 22 20 19 26 26 H 0.97004 * 119.99867 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.88661 * 296.86261 * 10 9 7 28 28 H 1.09002 * 109.88458 * 58.03408 * 10 9 7 29 29 H 1.09002 * 110.94266 * 220.31126 * 11 10 9 30 30 H 1.08999 * 110.77623 * 96.92859 * 11 10 9 31 31 H 1.09000 * 109.21073 * 288.42346 * 16 14 9 32 32 H 1.09004 * 109.21474 * 47.78683 * 16 14 9 33 33 H 1.09006 * 109.64138 * 55.90750 * 17 16 14 34 34 H 1.08996 * 109.64420 * 176.32848 * 17 16 14 35 35 H 1.08999 * 109.82979 * 177.59922 * 18 17 16 36 36 H 1.08998 * 109.83321 * 298.54642 * 18 17 16 37 37 H 1.09003 * 112.84927 * 48.80235 * 22 20 19 38 38 H 1.08998 * 113.61388 * 334.56471 * 23 22 20 39 39 H 1.08996 * 113.61442 * 105.46774 * 23 22 20 40 40 H 1.09002 * 113.61565 * 270.88357 * 24 23 22 41 41 H 1.08996 * 113.61635 * 139.97738 * 24 23 22 42 42 H 1.09000 * 113.61711 * 254.53154 * 25 22 20 43 43 H 1.09002 * 113.61034 * 25.43705 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9852 1.3947 5 1 3.4908 1.4729 -0.8033 6 1 1.3988 2.6809 -0.5915 7 6 2.0102 -1.2022 -0.0005 8 1 3.0851 -1.2051 -0.1052 9 7 1.3319 -2.3844 0.1317 10 6 -0.1310 -2.5390 0.1507 11 6 -0.4306 -4.0524 0.2498 12 6 0.8785 -4.6875 -0.2673 13 1 0.9038 -4.6859 -1.3570 14 6 1.9475 -3.7237 0.2864 15 1 2.8890 -3.7965 -0.2581 16 6 2.1504 -3.9557 1.7851 17 6 2.5042 -5.4150 2.0650 18 6 1.3136 -6.2909 1.6524 19 7 1.0495 -6.0399 0.2305 20 6 0.9647 -7.0788 -0.6239 21 8 0.7464 -6.8802 -1.8003 22 6 1.1412 -8.4871 -0.1176 23 6 2.6126 -8.9127 0.0193 24 6 2.1854 -10.2837 -0.5309 25 6 1.0152 -9.5568 -1.2152 26 1 -0.4850 0.8401 0.0004 27 1 -0.5476 -2.0192 1.0135 28 1 -0.5582 -2.1377 -0.7683 29 1 -1.2717 -4.3256 -0.3874 30 1 -0.6198 -4.3422 1.2833 31 1 2.9581 -3.3162 2.1410 32 1 1.2321 -3.7021 2.3149 33 1 3.3839 -5.6962 1.4860 34 1 2.7081 -5.5452 3.1278 35 1 1.5582 -7.3423 1.8032 36 1 0.4371 -6.0259 2.2437 37 1 0.5405 -8.6971 0.7674 38 1 3.2878 -8.3684 -0.6409 39 1 2.9633 -8.9462 1.0508 40 1 1.8712 -10.9856 0.2416 41 1 2.9007 -10.7155 -1.2309 42 1 0.0767 -10.1101 -1.1800 43 1 1.2535 -9.1886 -2.2131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049275739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:11 Heat of formation + Delta-G solvation = 11.862851 kcal Electronic energy + Delta-G solvation = -23018.172144 eV Core-core repulsion = 19871.475398 eV Total energy + Delta-G solvation = -3146.696746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.65041 -38.78398 -36.98105 -35.22175 -32.35125 -32.20352 -29.14053 -28.35627 -26.80195 -25.76328 -24.32127 -24.24781 -21.99570 -20.87441 -19.98539 -19.22442 -18.06442 -17.38811 -16.86059 -15.85746 -15.57044 -14.77422 -14.73588 -14.33252 -14.14712 -13.76004 -13.43382 -13.07622 -12.76134 -12.58862 -12.51486 -12.17289 -11.97263 -11.83371 -11.40179 -11.25246 -11.00177 -10.96023 -10.76580 -10.67924 -10.61455 -10.54028 -10.44979 -10.07869 -10.03928 -9.62759 -9.57108 -9.33440 -8.60109 -8.21744 -6.84064 -5.71290 -3.04443 2.80093 3.23953 3.41067 3.46258 3.47833 4.38525 4.45996 4.49597 4.54506 4.66900 4.87132 5.06474 5.18594 5.29957 5.37798 5.42361 5.48961 5.50663 5.62326 5.64863 5.66899 5.70514 5.73658 5.83331 5.89133 5.95335 6.03859 6.14007 6.23484 6.28647 6.33425 6.38561 6.53378 6.62883 6.77635 7.02485 7.09240 7.56070 7.62927 7.69959 7.83269 8.24479 8.44042 9.21289 9.81242 10.48120 11.40422 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034943 B = 0.004467 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.120884 B = 6266.840744 C = 6489.421499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.130 3.870 13 H 0.100 0.900 14 C 0.156 3.844 15 H 0.058 0.942 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.107 3.893 19 N -0.591 5.591 20 C 0.517 3.483 21 O -0.544 6.544 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.142 4.142 25 C -0.118 4.118 26 H 0.252 0.748 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -18.705 4.640 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.026 3.974 13 H 0.118 0.882 14 C 0.047 3.953 15 H 0.076 0.924 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.015 4.015 19 N -0.323 5.323 20 C 0.305 3.695 21 O -0.422 6.422 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.180 4.180 25 C -0.156 4.156 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.737 -18.301 3.979 18.928 hybrid contribution 0.347 1.064 0.266 1.151 sum 3.085 -17.237 4.245 18.018 Atomic orbital electron populations 1.69967 1.04913 1.25106 1.56647 1.24805 0.95666 0.97584 1.02122 0.86167 0.78643 0.83532 0.77610 1.21583 1.20759 1.21736 1.19017 0.90993 0.82357 1.43265 0.90494 1.44711 1.01425 1.00528 1.85611 1.21171 0.84407 0.87732 1.01134 1.23099 0.96437 0.99563 0.99926 1.21746 0.96385 0.79428 0.99864 0.88212 1.21356 0.94506 0.86250 0.93160 0.92383 1.22112 1.01896 0.93535 0.99415 1.21922 0.97468 0.97044 1.00711 1.21822 0.98458 0.99806 0.81451 1.47628 1.69961 1.06419 1.08254 1.20531 0.76279 0.86609 0.86050 1.90671 1.49035 1.85605 1.16876 1.22778 0.99630 0.92358 1.01129 1.22831 0.94308 0.96858 1.02002 1.22841 0.98571 0.96232 1.00310 1.22809 0.98756 0.95365 0.98680 0.93726 0.93712 0.93533 0.92144 0.92334 0.92159 0.91894 0.91875 0.91414 0.90059 0.91459 0.87220 0.89621 0.90744 0.90037 0.91110 0.91219 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.38 55.49 0.58 -26.45 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 22.14 29.56 -169.99 -5.02 17.12 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 9 N -0.60 -15.10 2.91 -162.17 -0.47 -15.57 16 10 C 0.18 4.42 5.19 -2.87 -0.01 4.41 16 11 C -0.15 -2.97 6.07 -25.15 -0.15 -3.12 16 12 C 0.13 2.50 3.10 -67.29 -0.21 2.29 16 13 H 0.10 2.19 6.96 -51.93 -0.36 1.83 16 14 C 0.16 3.20 3.59 -66.35 -0.24 2.97 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -2.27 5.10 -26.86 -0.14 -2.40 16 17 C -0.13 -1.70 6.11 -26.63 -0.16 -1.87 16 18 C 0.11 1.30 6.01 -3.64 -0.02 1.27 16 19 N -0.59 -9.15 2.73 -165.03 -0.45 -9.61 16 20 C 0.52 8.05 7.18 -10.99 -0.08 7.97 16 21 O -0.54 -10.67 15.22 5.55 0.08 -10.58 16 22 C -0.14 -1.50 2.70 -90.96 -0.25 -1.74 16 23 C -0.12 -1.11 7.16 -25.92 -0.19 -1.30 16 24 C -0.14 -1.13 8.08 -25.90 -0.21 -1.34 16 25 C -0.12 -1.22 7.41 -25.89 -0.19 -1.41 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 27 H 0.04 1.20 7.44 -51.93 -0.39 0.81 16 28 H 0.05 1.28 7.49 -51.93 -0.39 0.89 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.06 6.81 -51.93 -0.35 0.71 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.74 5.27 -51.93 -0.27 0.47 16 36 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 37 H 0.11 0.98 7.45 -51.93 -0.39 0.59 16 38 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 39 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.17 7.43 -51.93 -0.39 0.78 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -31.49 326.37 -9.52 -41.01 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.06 Total: 0.16 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.10 Total: -0.99 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.35 Total: -51.63 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.49 -9.52 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049275739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.873 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds