Wall clock time and date at job start Tue Mar 31 2020 00:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47119 * 95.01226 * 3 2 1 5 5 H 1.48505 * 109.47037 * 215.00948 * 3 2 1 6 6 H 1.48494 * 109.47363 * 335.00748 * 3 2 1 7 7 C 1.38814 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00025 * 173.57691 * 7 2 1 9 9 N 1.36939 * 120.00138 * 353.57197 * 7 2 1 10 10 C 1.47123 * 125.76419 * 6.32562 * 9 7 2 11 11 C 1.54589 * 107.23762 * 177.31825 * 10 9 7 12 12 C 1.54419 * 102.53039 * 338.65926 * 11 10 9 13 13 H 1.09004 * 110.71588 * 279.24870 * 12 11 10 14 14 C 1.48208 * 125.76831 * 186.64120 * 9 7 2 15 15 H 1.09002 * 111.52783 * 326.97807 * 14 9 7 16 16 C 1.53006 * 107.11940 * 89.09918 * 14 9 7 17 17 C 1.52740 * 110.79918 * 168.08114 * 16 14 9 18 18 C 1.53461 * 108.43893 * 296.22843 * 17 16 14 19 19 N 1.45117 * 111.61324 * 156.38545 * 12 11 10 20 20 C 1.34781 * 119.57188 * 111.33770 * 19 12 11 21 21 O 1.21287 * 119.99858 * 359.97438 * 20 19 12 22 22 C 1.50695 * 119.99946 * 179.97438 * 20 19 12 23 23 C 1.53782 * 113.61676 * 277.50064 * 22 20 19 24 24 C 1.53781 * 87.08002 * 220.01651 * 23 22 20 25 25 C 1.53784 * 113.61480 * 179.97438 * 22 20 19 26 26 H 0.97004 * 119.99867 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.88661 * 296.86261 * 10 9 7 28 28 H 1.09002 * 109.88458 * 58.03408 * 10 9 7 29 29 H 1.09002 * 110.94266 * 220.31126 * 11 10 9 30 30 H 1.08999 * 110.77623 * 96.92859 * 11 10 9 31 31 H 1.09000 * 109.21073 * 288.42346 * 16 14 9 32 32 H 1.09004 * 109.21474 * 47.78683 * 16 14 9 33 33 H 1.09006 * 109.64138 * 55.90750 * 17 16 14 34 34 H 1.08996 * 109.64420 * 176.32848 * 17 16 14 35 35 H 1.08999 * 109.82979 * 177.59922 * 18 17 16 36 36 H 1.08998 * 109.83321 * 298.54642 * 18 17 16 37 37 H 1.09003 * 112.84927 * 48.80235 * 22 20 19 38 38 H 1.08998 * 113.61388 * 334.56471 * 23 22 20 39 39 H 1.08996 * 113.61442 * 105.46774 * 23 22 20 40 40 H 1.09002 * 113.61565 * 270.88357 * 24 23 22 41 41 H 1.08996 * 113.61635 * 139.97738 * 24 23 22 42 42 H 1.09000 * 113.61711 * 254.53154 * 25 22 20 43 43 H 1.09002 * 113.61034 * 25.43705 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9852 1.3947 5 1 3.4908 1.4729 -0.8033 6 1 1.3988 2.6809 -0.5915 7 6 2.0102 -1.2022 -0.0005 8 1 3.0851 -1.2051 -0.1052 9 7 1.3319 -2.3844 0.1317 10 6 -0.1310 -2.5390 0.1507 11 6 -0.4306 -4.0524 0.2498 12 6 0.8785 -4.6875 -0.2673 13 1 0.9038 -4.6859 -1.3570 14 6 1.9475 -3.7237 0.2864 15 1 2.8890 -3.7965 -0.2581 16 6 2.1504 -3.9557 1.7851 17 6 2.5042 -5.4150 2.0650 18 6 1.3136 -6.2909 1.6524 19 7 1.0495 -6.0399 0.2305 20 6 0.9647 -7.0788 -0.6239 21 8 0.7464 -6.8802 -1.8003 22 6 1.1412 -8.4871 -0.1176 23 6 2.6126 -8.9127 0.0193 24 6 2.1854 -10.2837 -0.5309 25 6 1.0152 -9.5568 -1.2152 26 1 -0.4850 0.8401 0.0004 27 1 -0.5476 -2.0192 1.0135 28 1 -0.5582 -2.1377 -0.7683 29 1 -1.2717 -4.3256 -0.3874 30 1 -0.6198 -4.3422 1.2833 31 1 2.9581 -3.3162 2.1410 32 1 1.2321 -3.7021 2.3149 33 1 3.3839 -5.6962 1.4860 34 1 2.7081 -5.5452 3.1278 35 1 1.5582 -7.3423 1.8032 36 1 0.4371 -6.0259 2.2437 37 1 0.5405 -8.6971 0.7674 38 1 3.2878 -8.3684 -0.6409 39 1 2.9633 -8.9462 1.0508 40 1 1.8712 -10.9856 0.2416 41 1 2.9007 -10.7155 -1.2309 42 1 0.0767 -10.1101 -1.1800 43 1 1.2535 -9.1886 -2.2131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049275739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:10 Heat of formation + Delta-G solvation = -6.968262 kcal Electronic energy + Delta-G solvation = -23018.988723 eV Core-core repulsion = 19871.475398 eV Total energy + Delta-G solvation = -3147.513325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87766 -40.06966 -38.12445 -36.76504 -34.16691 -33.69790 -30.99213 -29.90838 -27.90822 -26.51456 -26.15175 -25.60913 -23.31721 -22.15530 -21.74438 -20.23253 -19.38930 -18.78790 -18.51888 -17.15377 -16.79355 -16.40902 -16.15135 -15.75035 -15.58360 -14.99595 -14.95676 -14.37926 -14.18523 -13.83316 -13.73505 -13.51520 -13.31872 -13.09530 -12.91902 -12.83853 -12.61147 -12.35217 -12.29109 -12.11876 -12.04599 -11.86797 -11.64190 -11.51947 -11.34920 -11.24048 -11.18373 -10.72177 -10.57959 -9.59057 -8.90376 -7.86986 -5.22270 1.44223 1.46622 1.54530 1.61765 2.00678 2.48917 3.30295 3.49309 3.53400 3.67477 3.73595 3.89649 3.92284 3.97521 4.04716 4.11735 4.14102 4.26425 4.36285 4.56390 4.61817 4.65775 4.72926 4.81897 4.84378 4.85968 4.91816 4.96942 5.07907 5.10957 5.14779 5.20048 5.24640 5.36581 5.39642 5.53810 5.56440 5.63293 5.67945 5.70897 6.16276 6.49878 7.06692 7.22199 7.73066 8.39557 9.23668 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034943 B = 0.004467 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.120884 B = 6266.840744 C = 6489.421499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.978 3.022 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.619 5.619 10 C 0.192 3.808 11 C -0.133 4.133 12 C 0.145 3.855 13 H 0.063 0.937 14 C 0.151 3.849 15 H 0.046 0.954 16 C -0.119 4.119 17 C -0.122 4.122 18 C 0.103 3.897 19 N -0.590 5.590 20 C 0.510 3.490 21 O -0.596 6.596 22 C -0.133 4.133 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.129 4.129 26 H 0.247 0.753 27 H 0.016 0.984 28 H 0.003 0.997 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -21.626 7.180 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.806 3.194 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.344 5.344 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.039 3.961 13 H 0.081 0.919 14 C 0.044 3.956 15 H 0.064 0.936 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.017 4.017 19 N -0.321 5.321 20 C 0.301 3.699 21 O -0.477 6.477 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.163 4.163 25 C -0.167 4.167 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.022 0.978 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.025 -21.276 6.554 22.623 hybrid contribution -0.026 1.952 -0.601 2.042 sum 3.999 -19.324 5.953 20.612 Atomic orbital electron populations 1.70185 1.06362 1.25333 1.58006 1.25639 0.96535 1.00921 1.02497 0.85111 0.77490 0.79067 0.77763 1.20833 1.19664 1.22237 1.19382 0.91400 0.83661 1.42470 0.90224 1.44972 1.01925 1.01788 1.85718 1.20849 0.84160 0.90659 0.97677 1.22900 0.96869 0.95875 1.01527 1.21203 0.95335 0.81768 0.97801 0.91923 1.21557 0.94029 0.84415 0.95593 0.93600 1.21897 1.00896 0.97199 0.95904 1.21886 0.97932 0.93106 1.03125 1.22182 0.98547 1.02210 0.78807 1.47703 1.69776 1.04519 1.10088 1.21543 0.74723 0.88342 0.85329 1.90654 1.51171 1.86517 1.19340 1.22983 1.01728 0.88396 1.02257 1.22853 0.92445 0.96932 1.03444 1.22823 0.97016 0.95975 1.00505 1.22838 1.00606 0.95954 0.97316 0.94382 0.96531 0.97845 0.91817 0.89816 0.93440 0.93117 0.91405 0.87770 0.85715 0.90414 0.83819 0.91712 0.87686 0.87275 0.90847 0.90140 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 10.38 21.65 0.22 -58.23 16 2 C -0.06 -3.65 5.48 84.86 0.47 -3.18 16 3 Si 0.98 46.63 29.56 68.60 2.03 48.66 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 7 C -0.24 -13.76 10.28 84.03 0.86 -12.90 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.36 16 9 N -0.62 -32.58 2.91 -667.00 -1.94 -34.52 16 10 C 0.19 9.93 5.19 86.80 0.45 10.38 16 11 C -0.13 -5.30 6.07 31.62 0.19 -5.11 16 12 C 0.15 5.65 3.10 46.14 0.14 5.80 16 13 H 0.06 2.91 6.96 -2.38 -0.02 2.89 16 14 C 0.15 6.33 3.59 45.08 0.16 6.49 16 15 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 16 C -0.12 -4.02 5.10 30.51 0.16 -3.87 16 17 C -0.12 -2.64 6.11 30.66 0.19 -2.46 16 18 C 0.10 2.02 6.01 86.48 0.52 2.54 16 19 N -0.59 -17.23 2.73 -794.40 -2.17 -19.40 16 20 C 0.51 15.22 7.18 87.65 0.63 15.85 16 21 O -0.60 -24.01 15.22 -3.05 -0.05 -24.06 16 22 C -0.13 -2.41 2.70 -11.01 -0.03 -2.44 16 23 C -0.12 -1.67 7.16 31.12 0.22 -1.45 16 24 C -0.13 -1.50 8.08 31.14 0.25 -1.24 16 25 C -0.13 -2.38 7.41 31.14 0.23 -2.15 16 26 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.02 0.93 7.44 -2.39 -0.02 0.92 16 28 H 0.00 0.19 7.49 -2.39 -0.02 0.18 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.08 2.93 6.81 -2.39 -0.02 2.91 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.84 7.12 -2.38 -0.02 1.82 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.44 5.27 -2.39 -0.01 1.43 16 36 H 0.08 1.45 7.53 -2.39 -0.02 1.43 16 37 H 0.14 1.70 7.45 -2.39 -0.02 1.68 16 38 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 39 H 0.10 0.88 7.89 -2.39 -0.02 0.86 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.57 7.43 -2.39 -0.02 1.55 16 Total: -1.00 -75.00 326.37 3.52 -71.49 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.98 Total: 9.78 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 4.44 Total: 6.28 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -3.89 Total: -112.15 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -75.00 3.52 -71.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049275739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.518 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds