Wall clock time and date at job start Tue Mar 31 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00441 * 2 1 4 4 H 1.48497 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47220 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47322 * 59.99472 * 3 2 1 7 7 C 1.38821 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.47120 * 125.76949 * 359.97438 * 9 7 2 11 11 C 1.54561 * 107.25626 * 182.59560 * 10 9 7 12 12 C 1.54418 * 102.44670 * 21.67140 * 11 10 9 13 13 H 1.09003 * 110.00489 * 80.25426 * 12 11 10 14 14 C 1.48212 * 125.76674 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52837 * 33.85770 * 14 9 7 16 16 C 1.53020 * 107.91623 * 271.20514 * 14 9 7 17 17 C 1.50966 * 111.77428 * 192.55480 * 16 14 9 18 18 C 1.53458 * 108.76791 * 62.88854 * 17 16 14 19 19 N 1.45125 * 111.60689 * 203.41770 * 12 11 10 20 20 C 1.34771 * 119.57952 * 248.62387 * 19 12 11 21 21 O 1.21286 * 120.00157 * 0.02562 * 20 19 12 22 22 C 1.50706 * 120.00168 * 179.97438 * 20 19 12 23 23 C 1.52994 * 109.47151 * 180.02562 * 22 20 19 24 24 C 1.53002 * 117.49790 * 243.75029 * 23 22 20 25 25 C 1.53001 * 117.49923 * 175.08901 * 23 22 20 26 26 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.88685 * 63.18031 * 10 9 7 28 28 H 1.09001 * 110.01317 * 302.07876 * 10 9 7 29 29 H 1.08999 * 110.81492 * 263.43479 * 11 10 9 30 30 H 1.08997 * 110.81720 * 139.91276 * 11 10 9 31 31 H 1.08994 * 109.20809 * 312.80782 * 16 14 9 32 32 H 1.09000 * 109.20767 * 72.12715 * 16 14 9 33 33 H 1.08999 * 109.08033 * 303.33572 * 17 16 14 34 34 H 1.08999 * 110.04379 * 183.01763 * 17 16 14 35 35 H 1.09008 * 109.83327 * 182.87741 * 18 17 16 36 36 H 1.09004 * 109.83443 * 61.92839 * 18 17 16 37 37 H 1.09001 * 109.47007 * 300.00402 * 22 20 19 38 38 H 1.08998 * 109.46505 * 60.00110 * 22 20 19 39 39 H 1.08998 * 115.55078 * 29.41998 * 23 22 20 40 40 H 1.09001 * 117.49985 * 359.97438 * 24 23 22 41 41 H 1.09001 * 117.49731 * 145.02343 * 24 23 22 42 42 H 1.08995 * 117.50021 * 214.97952 * 25 23 22 43 43 H 1.09000 * 117.49769 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1382 -2.5359 0.0005 11 6 -0.4463 -4.0491 0.0674 12 6 0.8580 -4.6285 0.6569 13 1 0.8712 -4.4925 1.7383 14 6 1.9338 -3.7397 0.0005 15 1 2.8658 -3.7588 0.5655 16 6 2.1549 -4.1563 -1.4551 17 6 2.4843 -5.6249 -1.5734 18 6 1.2876 -6.4416 -1.0675 19 7 1.0222 -6.0296 0.3162 20 6 0.9304 -6.9644 1.2827 21 8 0.7114 -6.6326 2.4285 22 6 1.0988 -8.4222 0.9395 23 6 0.9486 -9.2652 2.2073 24 6 2.1681 -10.0628 2.6739 25 6 0.9721 -10.7870 2.0507 26 1 -0.4849 0.8400 -0.0004 27 1 -0.5536 -2.1130 -0.9142 28 1 -0.5640 -2.0322 0.8683 29 1 -0.6330 -4.4507 -0.9286 30 1 -1.2903 -4.2437 0.7291 31 1 1.2493 -3.9551 -2.0273 32 1 2.9784 -3.5771 -1.8728 33 1 3.3611 -5.8436 -0.9639 34 1 2.6883 -5.8794 -2.6135 35 1 1.5263 -7.5048 -1.0975 36 1 0.4139 -6.2403 -1.6874 37 1 0.3378 -8.7154 0.2163 38 1 2.0881 -8.5826 0.5111 39 1 0.2962 -8.8483 2.9746 40 1 3.0772 -9.9872 2.0774 41 1 2.3178 -10.1709 3.7482 42 1 0.3356 -11.3713 2.7151 43 1 1.0950 -11.1876 1.0444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049285285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:13 Heat of formation + Delta-G solvation = 15.125791 kcal Electronic energy + Delta-G solvation = -22647.121980 eV Core-core repulsion = 19500.566726 eV Total energy + Delta-G solvation = -3146.555255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38557 -38.34387 -36.91961 -35.26733 -32.47920 -32.29109 -29.94897 -28.76560 -27.98942 -24.59818 -24.29822 -22.53401 -22.02369 -21.36091 -20.09486 -19.60345 -18.08719 -17.13619 -16.86862 -16.09620 -15.38941 -14.87344 -14.76232 -14.37402 -14.08323 -13.89502 -13.61901 -13.37489 -12.96377 -12.70348 -12.28236 -12.08800 -11.89057 -11.67642 -11.57106 -11.32523 -10.99932 -10.95379 -10.79897 -10.63232 -10.50269 -10.47209 -10.14755 -10.05039 -10.03622 -9.63868 -9.58496 -9.42551 -8.62006 -8.23513 -6.85620 -5.70561 -3.04702 2.82110 3.17733 3.40531 3.46153 3.48476 3.67866 4.46022 4.50246 4.58127 4.77240 4.93144 4.97022 5.13663 5.27094 5.28790 5.36815 5.40804 5.46237 5.50046 5.52330 5.60878 5.66234 5.69796 5.77861 5.89331 5.94555 6.00748 6.15154 6.19958 6.24024 6.32775 6.37767 6.53219 6.61354 6.75005 7.00540 7.08068 7.56324 7.61343 7.67908 7.83655 8.24011 8.42037 9.21263 9.80942 10.47034 11.40738 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033733 B = 0.004114 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.842235 B = 6804.335679 C = 6988.296943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.152 4.152 12 C 0.130 3.870 13 H 0.101 0.899 14 C 0.157 3.843 15 H 0.057 0.943 16 C -0.131 4.131 17 C -0.131 4.131 18 C 0.106 3.894 19 N -0.594 5.594 20 C 0.511 3.489 21 O -0.542 6.542 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.179 4.179 25 C -0.183 4.183 26 H 0.252 0.748 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 -19.302 -2.338 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.025 3.975 13 H 0.119 0.881 14 C 0.049 3.951 15 H 0.075 0.925 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.017 4.017 19 N -0.326 5.326 20 C 0.299 3.701 21 O -0.419 6.419 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.062 -18.835 -1.724 19.026 hybrid contribution 0.430 0.958 -0.229 1.075 sum 2.492 -17.877 -1.953 18.155 Atomic orbital electron populations 1.69970 1.04867 1.24921 1.57057 1.24801 0.95711 0.97624 1.02256 0.86047 0.78705 0.83807 0.77208 1.20530 1.21811 1.21761 1.19084 0.90445 0.82204 1.43681 0.90394 1.44700 1.01492 0.99295 1.86706 1.21166 0.84279 0.87794 1.01207 1.23116 0.96538 0.99770 0.99691 1.21741 0.96433 0.78192 1.01091 0.88096 1.21295 0.94578 0.86187 0.93070 0.92455 1.21756 1.01965 0.93390 0.99998 1.21604 0.97492 0.97230 1.00706 1.21842 0.98551 0.98741 0.82522 1.47627 1.70286 1.06816 1.07883 1.20566 0.76595 0.87840 0.85143 1.90677 1.48784 1.82342 1.20091 1.21253 1.03685 0.91863 0.98061 1.22079 1.02491 0.91763 0.99323 1.23032 0.92749 1.04543 1.01244 1.23002 1.02166 0.94541 1.02243 0.93801 0.94115 0.93042 0.92362 0.92106 0.91981 0.92251 0.91959 0.91280 0.90133 0.91247 0.88695 0.88962 0.86405 0.88898 0.88828 0.88804 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.33 55.49 0.57 -26.48 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.24 10.29 -15.06 -0.15 -6.40 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.05 2.95 -162.19 -0.48 -15.53 16 10 C 0.18 4.41 5.23 -2.88 -0.02 4.39 16 11 C -0.15 -2.96 6.10 -25.17 -0.15 -3.11 16 12 C 0.13 2.47 3.08 -67.29 -0.21 2.26 16 13 H 0.10 2.20 7.00 -51.93 -0.36 1.84 16 14 C 0.16 3.22 3.57 -66.35 -0.24 2.98 16 15 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.13 -2.26 5.02 -27.74 -0.14 -2.40 16 17 C -0.13 -1.66 6.05 -27.52 -0.17 -1.82 16 18 C 0.11 1.24 6.06 -3.64 -0.02 1.21 16 19 N -0.59 -9.03 2.73 -165.02 -0.45 -9.48 16 20 C 0.51 7.78 7.66 -10.99 -0.08 7.69 16 21 O -0.54 -10.46 14.91 5.55 0.08 -10.38 16 22 C -0.11 -1.14 4.29 -27.88 -0.12 -1.26 16 23 C -0.14 -1.49 5.41 -90.62 -0.49 -1.98 16 24 C -0.18 -1.67 10.18 -26.69 -0.27 -1.94 16 25 C -0.18 -1.51 10.25 -26.69 -0.27 -1.79 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 28 H 0.05 1.41 7.30 -51.93 -0.38 1.03 16 29 H 0.06 1.04 6.86 -51.93 -0.36 0.68 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.15 7.24 -51.93 -0.38 0.77 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.68 5.82 -51.92 -0.30 0.38 16 36 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 37 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 38 H 0.09 0.81 7.35 -51.93 -0.38 0.43 16 39 H 0.12 1.53 7.31 -51.93 -0.38 1.15 16 40 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -31.59 331.70 -9.81 -41.40 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.08 Total: 0.79 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.43 Total: -2.47 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.36 Total: -51.49 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.59 -9.81 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.526 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds