Wall clock time and date at job start Tue Mar 31 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00441 * 2 1 4 4 H 1.48497 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47220 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47322 * 59.99472 * 3 2 1 7 7 C 1.38821 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.47120 * 125.76949 * 359.97438 * 9 7 2 11 11 C 1.54561 * 107.25626 * 182.59560 * 10 9 7 12 12 C 1.54418 * 102.44670 * 21.67140 * 11 10 9 13 13 H 1.09003 * 110.00489 * 80.25426 * 12 11 10 14 14 C 1.48212 * 125.76674 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52837 * 33.85770 * 14 9 7 16 16 C 1.53020 * 107.91623 * 271.20514 * 14 9 7 17 17 C 1.50966 * 111.77428 * 192.55480 * 16 14 9 18 18 C 1.53458 * 108.76791 * 62.88854 * 17 16 14 19 19 N 1.45125 * 111.60689 * 203.41770 * 12 11 10 20 20 C 1.34771 * 119.57952 * 248.62387 * 19 12 11 21 21 O 1.21286 * 120.00157 * 0.02562 * 20 19 12 22 22 C 1.50706 * 120.00168 * 179.97438 * 20 19 12 23 23 C 1.52994 * 109.47151 * 180.02562 * 22 20 19 24 24 C 1.53002 * 117.49790 * 243.75029 * 23 22 20 25 25 C 1.53001 * 117.49923 * 175.08901 * 23 22 20 26 26 H 0.96996 * 119.99787 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.88685 * 63.18031 * 10 9 7 28 28 H 1.09001 * 110.01317 * 302.07876 * 10 9 7 29 29 H 1.08999 * 110.81492 * 263.43479 * 11 10 9 30 30 H 1.08997 * 110.81720 * 139.91276 * 11 10 9 31 31 H 1.08994 * 109.20809 * 312.80782 * 16 14 9 32 32 H 1.09000 * 109.20767 * 72.12715 * 16 14 9 33 33 H 1.08999 * 109.08033 * 303.33572 * 17 16 14 34 34 H 1.08999 * 110.04379 * 183.01763 * 17 16 14 35 35 H 1.09008 * 109.83327 * 182.87741 * 18 17 16 36 36 H 1.09004 * 109.83443 * 61.92839 * 18 17 16 37 37 H 1.09001 * 109.47007 * 300.00402 * 22 20 19 38 38 H 1.08998 * 109.46505 * 60.00110 * 22 20 19 39 39 H 1.08998 * 115.55078 * 29.41998 * 23 22 20 40 40 H 1.09001 * 117.49985 * 359.97438 * 24 23 22 41 41 H 1.09001 * 117.49731 * 145.02343 * 24 23 22 42 42 H 1.08995 * 117.50021 * 214.97952 * 25 23 22 43 43 H 1.09000 * 117.49769 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1382 -2.5359 0.0005 11 6 -0.4463 -4.0491 0.0674 12 6 0.8580 -4.6285 0.6569 13 1 0.8712 -4.4925 1.7383 14 6 1.9338 -3.7397 0.0005 15 1 2.8658 -3.7588 0.5655 16 6 2.1549 -4.1563 -1.4551 17 6 2.4843 -5.6249 -1.5734 18 6 1.2876 -6.4416 -1.0675 19 7 1.0222 -6.0296 0.3162 20 6 0.9304 -6.9644 1.2827 21 8 0.7114 -6.6326 2.4285 22 6 1.0988 -8.4222 0.9395 23 6 0.9486 -9.2652 2.2073 24 6 2.1681 -10.0628 2.6739 25 6 0.9721 -10.7870 2.0507 26 1 -0.4849 0.8400 -0.0004 27 1 -0.5536 -2.1130 -0.9142 28 1 -0.5640 -2.0322 0.8683 29 1 -0.6330 -4.4507 -0.9286 30 1 -1.2903 -4.2437 0.7291 31 1 1.2493 -3.9551 -2.0273 32 1 2.9784 -3.5771 -1.8728 33 1 3.3611 -5.8436 -0.9639 34 1 2.6883 -5.8794 -2.6135 35 1 1.5263 -7.5048 -1.0975 36 1 0.4139 -6.2403 -1.6874 37 1 0.3378 -8.7154 0.2163 38 1 2.0881 -8.5826 0.5111 39 1 0.2962 -8.8483 2.9746 40 1 3.0772 -9.9872 2.0774 41 1 2.3178 -10.1709 3.7482 42 1 0.3356 -11.3713 2.7151 43 1 1.0950 -11.1876 1.0444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049285285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:13 Heat of formation + Delta-G solvation = -3.561388 kcal Electronic energy + Delta-G solvation = -22647.932317 eV Core-core repulsion = 19500.566726 eV Total energy + Delta-G solvation = -3147.365591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69130 -39.67602 -37.83520 -36.77656 -34.21694 -33.79700 -31.36976 -30.30667 -29.42106 -26.37588 -25.80325 -23.33496 -23.17398 -22.44397 -21.92375 -20.74108 -19.45669 -18.76909 -18.29683 -17.19909 -16.80956 -16.52203 -16.08004 -15.92508 -15.20210 -15.05857 -14.83487 -14.77062 -14.30513 -14.08075 -13.80333 -13.61167 -13.23775 -13.11773 -12.84189 -12.63832 -12.43737 -12.30869 -12.27949 -12.23017 -12.00955 -11.88006 -11.61630 -11.53784 -11.23560 -11.16889 -10.89535 -10.74230 -10.62913 -9.57421 -8.91342 -7.85892 -5.22057 1.44026 1.45627 1.55627 1.67050 1.99268 2.48639 2.96938 3.31815 3.49890 3.59777 3.81094 3.86853 3.93959 4.05378 4.09755 4.12170 4.17437 4.24239 4.35511 4.52087 4.57833 4.64243 4.66221 4.72230 4.82257 4.85076 4.85920 4.87441 4.99564 5.09048 5.11321 5.22000 5.32669 5.36952 5.39568 5.41398 5.55298 5.63182 5.67187 5.71977 6.16483 6.51159 7.07179 7.24439 7.73414 8.39107 9.24398 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033733 B = 0.004114 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.842235 B = 6804.335679 C = 6988.296943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.192 3.808 11 C -0.133 4.133 12 C 0.145 3.855 13 H 0.063 0.937 14 C 0.152 3.848 15 H 0.045 0.955 16 C -0.120 4.120 17 C -0.123 4.123 18 C 0.102 3.898 19 N -0.593 5.593 20 C 0.504 3.496 21 O -0.594 6.594 22 C -0.095 4.095 23 C -0.164 4.164 24 C -0.185 4.185 25 C -0.158 4.158 26 H 0.246 0.754 27 H 0.012 0.988 28 H 0.008 0.992 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -22.552 -4.444 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.222 1.222 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.344 5.344 10 C 0.066 3.934 11 C -0.172 4.172 12 C 0.039 3.961 13 H 0.081 0.919 14 C 0.045 3.955 15 H 0.063 0.937 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.019 4.019 19 N -0.325 5.325 20 C 0.294 3.706 21 O -0.474 6.474 22 C -0.134 4.134 23 C -0.183 4.183 24 C -0.222 4.222 25 C -0.195 4.195 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.449 -22.147 -3.862 22.744 hybrid contribution 0.028 1.945 0.495 2.007 sum 3.477 -20.202 -3.367 20.774 Atomic orbital electron populations 1.70190 1.06312 1.25161 1.58423 1.25647 0.96602 1.00972 1.02726 0.85004 0.78183 0.79450 0.76660 1.18966 1.21693 1.22212 1.19444 0.90894 0.83507 1.42675 0.90077 1.44963 1.02004 1.00667 1.86752 1.20839 0.84026 0.90742 0.97753 1.22915 0.96982 0.96097 1.01245 1.21179 0.95295 0.80969 0.98652 0.91871 1.21504 0.94128 0.84384 0.95490 0.93735 1.21546 1.00950 0.97106 0.96384 1.21579 0.98080 0.93262 1.03201 1.22227 0.98507 1.01249 0.79929 1.47695 1.70138 1.04746 1.09881 1.21573 0.75031 0.89767 0.84193 1.90666 1.50925 1.83387 1.22463 1.21304 1.06289 0.87321 0.98489 1.21993 1.03378 0.93659 0.99256 1.23140 0.93283 1.04419 1.01356 1.23099 1.00661 0.92288 1.03433 0.94445 0.97008 0.97375 0.89788 0.91813 0.93172 0.93526 0.91506 0.87660 0.85295 0.90241 0.85615 0.85936 0.89812 0.87515 0.89578 0.88464 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.61 10.33 21.65 0.22 -58.39 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.24 -13.49 10.29 84.04 0.87 -12.63 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -32.47 2.95 -667.04 -1.97 -34.44 16 10 C 0.19 9.89 5.23 86.79 0.45 10.34 16 11 C -0.13 -5.27 6.10 31.61 0.19 -5.08 16 12 C 0.15 5.59 3.08 46.14 0.14 5.73 16 13 H 0.06 2.91 7.00 -2.39 -0.02 2.89 16 14 C 0.15 6.31 3.57 45.08 0.16 6.47 16 15 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 16 C -0.12 -3.97 5.02 29.94 0.15 -3.82 16 17 C -0.12 -2.57 6.05 30.09 0.18 -2.39 16 18 C 0.10 1.86 6.06 86.48 0.52 2.39 16 19 N -0.59 -16.74 2.73 -794.38 -2.17 -18.91 16 20 C 0.50 14.47 7.66 87.66 0.67 15.14 16 21 O -0.59 -23.43 14.91 -3.05 -0.05 -23.48 16 22 C -0.09 -1.60 4.29 29.85 0.13 -1.47 16 23 C -0.16 -3.19 5.41 -10.79 -0.06 -3.25 16 24 C -0.19 -2.98 10.18 30.62 0.31 -2.67 16 25 C -0.16 -2.04 10.25 30.62 0.31 -1.73 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.01 0.66 7.60 -2.38 -0.02 0.64 16 28 H 0.01 0.47 7.30 -2.39 -0.02 0.45 16 29 H 0.08 2.89 6.86 -2.39 -0.02 2.87 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 1.78 7.24 -2.39 -0.02 1.76 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.13 1.22 5.82 -2.38 -0.01 1.21 16 36 H 0.08 1.39 7.53 -2.38 -0.02 1.37 16 37 H 0.13 1.39 7.93 -2.39 -0.02 1.38 16 38 H 0.12 1.38 7.35 -2.39 -0.02 1.36 16 39 H 0.08 2.21 7.31 -2.39 -0.02 2.20 16 40 H 0.11 1.41 8.03 -2.39 -0.02 1.39 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -75.60 331.70 3.55 -72.05 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.98 Total: 10.73 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 4.50 Total: 3.64 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -3.91 Total: -111.74 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.60 3.55 -72.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.490 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds