Wall clock time and date at job start Tue Mar 31 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99835 * 2 1 4 4 H 1.48501 * 109.46960 * 95.30721 * 3 2 1 5 5 H 1.48495 * 109.47419 * 215.30840 * 3 2 1 6 6 H 1.48501 * 109.47125 * 335.31092 * 3 2 1 7 7 C 1.38814 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99837 * 25.39669 * 7 2 1 9 9 N 1.36928 * 119.99997 * 205.40200 * 7 2 1 10 10 C 1.48391 * 126.56296 * 10.14819 * 9 7 2 11 11 C 1.55469 * 106.97372 * 174.47992 * 10 9 7 12 12 C 1.53433 * 101.67537 * 337.39886 * 11 10 9 13 13 H 1.08995 * 111.14916 * 282.01542 * 12 11 10 14 14 C 1.45019 * 126.56301 * 189.83847 * 9 7 2 15 15 H 1.09002 * 108.70204 * 95.90089 * 14 9 7 16 16 C 1.50560 * 120.13887 * 332.43949 * 14 9 7 17 17 C 1.53866 * 108.15227 * 176.39535 * 16 14 9 18 18 C 1.52715 * 111.52162 * 56.31287 * 17 16 14 19 19 N 1.45724 * 116.36780 * 153.54152 * 12 11 10 20 20 C 1.34779 * 122.22301 * 9.89373 * 19 12 11 21 21 O 1.21279 * 120.00542 * 359.97438 * 20 19 12 22 22 C 1.50705 * 119.99624 * 179.97438 * 20 19 12 23 23 C 1.52998 * 109.47027 * 179.97438 * 22 20 19 24 24 C 1.52999 * 117.50320 * 243.62220 * 23 22 20 25 25 C 1.52995 * 60.00040 * 252.51202 * 24 23 22 26 26 H 0.97001 * 119.99607 * 183.15073 * 1 2 3 27 27 H 1.08999 * 109.95844 * 293.85562 * 10 9 7 28 28 H 1.09004 * 109.95795 * 55.06442 * 10 9 7 29 29 H 1.08998 * 110.98796 * 95.50152 * 11 10 9 30 30 H 1.09008 * 110.98401 * 219.26536 * 11 10 9 31 31 H 1.09000 * 109.98935 * 56.38117 * 16 14 9 32 32 H 1.09009 * 108.97164 * 295.81546 * 16 14 9 33 33 H 1.08996 * 109.07299 * 295.78214 * 17 16 14 34 34 H 1.09005 * 109.01375 * 176.80112 * 17 16 14 35 35 H 1.08999 * 109.15957 * 191.05400 * 18 17 16 36 36 H 1.09007 * 109.15988 * 71.87487 * 18 17 16 37 37 H 1.08991 * 109.47136 * 299.99785 * 22 20 19 38 38 H 1.09001 * 109.47234 * 59.99811 * 22 20 19 39 39 H 1.09007 * 115.54853 * 29.32970 * 23 22 20 40 40 H 1.08998 * 117.49388 * 0.02562 * 24 23 22 41 41 H 1.08997 * 117.50122 * 145.01784 * 24 23 22 42 42 H 1.09003 * 117.49524 * 252.50882 * 25 24 23 43 43 H 1.09002 * 117.51773 * 107.48191 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6098 1.9816 1.3941 5 1 3.4871 1.4753 -0.8092 6 1 1.3959 2.6824 -0.5848 7 6 2.0103 -1.2021 -0.0005 8 1 1.5486 -2.0921 -0.4021 9 7 3.2803 -1.2596 0.5081 10 6 3.9730 -0.1971 1.2783 11 6 5.3303 -0.7903 1.7504 12 6 5.0432 -2.2969 1.7055 13 1 4.4586 -2.6118 2.5698 14 6 4.2036 -2.3729 0.4026 15 1 4.8671 -2.1977 -0.4443 16 6 3.6808 -3.7782 0.2655 17 6 4.8830 -4.7214 0.0847 18 6 5.8775 -4.5884 1.2361 19 7 6.1930 -3.1692 1.5044 20 6 7.4599 -2.7124 1.5590 21 8 7.6725 -1.5393 1.7813 22 6 8.6122 -3.6595 1.3439 23 6 9.9310 -2.8921 1.4569 24 6 10.8128 -2.8151 0.2090 25 6 11.2275 -3.7012 1.3852 26 1 -0.4849 -0.8388 0.0462 27 1 4.1474 0.6703 0.6417 28 1 3.3714 0.0895 2.1409 29 1 6.1328 -0.5251 1.0622 30 1 5.5659 -0.4673 2.7645 31 1 3.0216 -3.8477 -0.5998 32 1 3.1346 -4.0430 1.1709 33 1 5.3873 -4.4803 -0.8510 34 1 4.5242 -5.7497 0.0410 35 1 6.7955 -5.1166 0.9786 36 1 5.4483 -5.0353 2.1329 37 1 8.5827 -4.4450 2.0989 38 1 8.5356 -4.1056 0.3523 39 1 9.9150 -2.0245 2.1166 40 1 10.4531 -3.3108 -0.6927 41 1 11.3769 -1.8966 0.0473 42 1 12.0647 -3.3657 1.9973 43 1 11.1410 -4.7803 1.2578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049285286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:16 Heat of formation + Delta-G solvation = 25.579094 kcal Electronic energy + Delta-G solvation = -22860.350700 eV Core-core repulsion = 19714.248735 eV Total energy + Delta-G solvation = -3146.101965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52289 -38.39104 -36.94194 -35.67360 -32.78869 -32.39379 -30.27068 -28.72206 -28.58501 -24.78394 -23.86895 -22.56539 -21.96906 -21.56143 -20.54979 -19.59659 -18.88336 -17.29010 -16.55328 -16.06377 -15.62727 -15.33974 -14.86945 -14.29447 -14.24844 -14.15198 -14.03004 -13.56219 -13.09017 -12.78312 -12.47035 -12.30768 -12.18968 -11.89001 -11.71074 -11.62353 -11.28279 -11.04970 -10.76989 -10.59461 -10.53269 -10.52239 -10.33799 -10.16871 -10.09937 -9.43465 -9.17096 -9.08427 -8.55380 -8.29577 -7.02746 -6.32198 -3.15355 2.75014 3.02810 3.50467 3.59017 3.63287 3.75706 4.36861 4.52657 4.64472 4.67090 4.73566 4.89780 4.98178 5.09711 5.17435 5.23175 5.25659 5.32215 5.42596 5.43382 5.49745 5.53619 5.61352 5.65594 5.72269 5.81879 5.88207 5.91316 5.99416 6.09668 6.15366 6.24091 6.31412 6.53425 6.57752 6.60746 6.70080 6.93689 7.03116 7.60983 7.73411 8.33697 8.36207 9.04224 9.63944 10.30628 11.18297 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.005067 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.305108 B = 5524.583639 C = 6259.872700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.015 4.015 3 Si 1.058 2.942 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.299 1.299 7 C -0.326 4.326 8 H 0.079 0.921 9 N -0.598 5.598 10 C 0.106 3.894 11 C -0.112 4.112 12 C 0.117 3.883 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.016 0.984 16 C -0.114 4.114 17 C -0.129 4.129 18 C 0.111 3.889 19 N -0.602 5.602 20 C 0.518 3.482 21 O -0.532 6.532 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.178 4.178 25 C -0.182 4.182 26 H 0.262 0.738 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.675 -12.123 3.099 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.215 4.215 3 Si 0.890 3.110 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.453 4.453 8 H 0.097 0.903 9 N -0.324 5.324 10 C -0.019 4.019 11 C -0.150 4.150 12 C 0.013 3.987 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.033 0.967 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.012 4.012 19 N -0.335 5.335 20 C 0.307 3.693 21 O -0.409 6.409 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.215 4.215 25 C -0.219 4.219 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.497 -9.842 3.116 21.183 hybrid contribution 0.119 -1.807 -0.066 1.812 sum 18.616 -11.649 3.050 22.171 Atomic orbital electron populations 1.70915 1.06035 1.29150 1.49764 1.25724 0.96157 1.00738 0.98914 0.83943 0.73968 0.76648 0.76405 1.22049 1.21931 1.22738 1.20001 0.87662 0.97386 1.40266 0.90298 1.44334 1.13535 1.11861 1.62648 1.22326 0.91907 0.92579 0.95087 1.22642 0.97378 0.92708 1.02311 1.22218 0.85732 0.91433 0.99348 0.90114 1.20464 0.91286 0.89259 0.94015 0.96699 1.21270 0.96697 0.94805 1.02496 1.21889 0.96524 1.00127 0.98221 1.21715 0.99365 0.81325 0.98776 1.47982 1.05411 1.09689 1.70432 1.20440 0.83231 0.89032 0.76643 1.90676 1.84159 1.17396 1.48697 1.21253 0.92026 0.98005 1.03626 1.22066 0.89488 1.01828 1.02264 1.23019 1.03911 1.01907 0.92678 1.22987 0.98401 0.98014 1.02522 0.92776 0.94637 0.93656 0.89191 0.91256 0.91306 0.91925 0.91774 0.90687 0.90217 0.91420 0.88784 0.89059 0.86355 0.88903 0.88787 0.88796 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.92 13.71 55.49 0.76 -28.16 16 2 C -0.01 -0.44 5.45 -17.43 -0.10 -0.54 16 3 Si 1.06 27.65 24.65 -169.99 -4.19 23.46 16 4 H -0.29 -7.27 6.64 56.52 0.38 -6.89 16 5 H -0.29 -7.43 6.56 56.52 0.37 -7.06 16 6 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 7 C -0.33 -9.35 10.17 -15.06 -0.15 -9.50 16 8 H 0.08 2.34 7.59 -52.49 -0.40 1.94 16 9 N -0.60 -15.00 3.24 -163.77 -0.53 -15.53 16 10 C 0.11 2.47 4.93 -1.69 -0.01 2.46 16 11 C -0.11 -2.23 4.98 -25.20 -0.13 -2.35 16 12 C 0.12 2.12 3.30 -66.97 -0.22 1.90 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.16 3.26 2.59 -68.79 -0.18 3.08 16 15 H 0.02 0.34 8.01 -51.93 -0.42 -0.07 16 16 C -0.11 -1.94 5.39 -27.50 -0.15 -2.09 16 17 C -0.13 -1.55 5.94 -26.43 -0.16 -1.71 16 18 C 0.11 1.19 6.32 -3.45 -0.02 1.17 16 19 N -0.60 -8.72 2.94 -164.19 -0.48 -9.20 16 20 C 0.52 7.50 7.69 -10.98 -0.08 7.41 16 21 O -0.53 -9.53 12.41 5.56 0.07 -9.46 16 22 C -0.11 -1.09 4.40 -27.88 -0.12 -1.22 16 23 C -0.14 -1.43 5.41 -90.62 -0.49 -1.92 16 24 C -0.18 -1.64 10.18 -26.73 -0.27 -1.91 16 25 C -0.18 -1.46 10.25 -26.73 -0.27 -1.73 16 26 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 27 H 0.04 0.88 4.24 -51.93 -0.22 0.66 16 28 H 0.05 1.09 7.45 -51.93 -0.39 0.70 16 29 H 0.09 1.87 6.27 -51.93 -0.33 1.55 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 32 H 0.06 1.08 8.12 -51.92 -0.42 0.65 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.62 6.18 -51.93 -0.32 0.29 16 36 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.09 0.74 8.02 -51.93 -0.42 0.33 16 38 H 0.09 0.79 7.49 -51.93 -0.39 0.40 16 39 H 0.12 1.46 7.30 -51.93 -0.38 1.08 16 40 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -33.22 324.61 -8.92 -42.14 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.09 Total: -1.19 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.35 Total: -6.95 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.25 Total: -52.89 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 27.65 SS G_CDS: -4.19 Total: 23.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.22 -8.92 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.715 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds