Wall clock time and date at job start Tue Mar 31 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99835 * 2 1 4 4 H 1.48501 * 109.46960 * 95.30721 * 3 2 1 5 5 H 1.48495 * 109.47419 * 215.30840 * 3 2 1 6 6 H 1.48501 * 109.47125 * 335.31092 * 3 2 1 7 7 C 1.38814 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99837 * 25.39669 * 7 2 1 9 9 N 1.36928 * 119.99997 * 205.40200 * 7 2 1 10 10 C 1.48391 * 126.56296 * 10.14819 * 9 7 2 11 11 C 1.55469 * 106.97372 * 174.47992 * 10 9 7 12 12 C 1.53433 * 101.67537 * 337.39886 * 11 10 9 13 13 H 1.08995 * 111.14916 * 282.01542 * 12 11 10 14 14 C 1.45019 * 126.56301 * 189.83847 * 9 7 2 15 15 H 1.09002 * 108.70204 * 95.90089 * 14 9 7 16 16 C 1.50560 * 120.13887 * 332.43949 * 14 9 7 17 17 C 1.53866 * 108.15227 * 176.39535 * 16 14 9 18 18 C 1.52715 * 111.52162 * 56.31287 * 17 16 14 19 19 N 1.45724 * 116.36780 * 153.54152 * 12 11 10 20 20 C 1.34779 * 122.22301 * 9.89373 * 19 12 11 21 21 O 1.21279 * 120.00542 * 359.97438 * 20 19 12 22 22 C 1.50705 * 119.99624 * 179.97438 * 20 19 12 23 23 C 1.52998 * 109.47027 * 179.97438 * 22 20 19 24 24 C 1.52999 * 117.50320 * 243.62220 * 23 22 20 25 25 C 1.52995 * 60.00040 * 252.51202 * 24 23 22 26 26 H 0.97001 * 119.99607 * 183.15073 * 1 2 3 27 27 H 1.08999 * 109.95844 * 293.85562 * 10 9 7 28 28 H 1.09004 * 109.95795 * 55.06442 * 10 9 7 29 29 H 1.08998 * 110.98796 * 95.50152 * 11 10 9 30 30 H 1.09008 * 110.98401 * 219.26536 * 11 10 9 31 31 H 1.09000 * 109.98935 * 56.38117 * 16 14 9 32 32 H 1.09009 * 108.97164 * 295.81546 * 16 14 9 33 33 H 1.08996 * 109.07299 * 295.78214 * 17 16 14 34 34 H 1.09005 * 109.01375 * 176.80112 * 17 16 14 35 35 H 1.08999 * 109.15957 * 191.05400 * 18 17 16 36 36 H 1.09007 * 109.15988 * 71.87487 * 18 17 16 37 37 H 1.08991 * 109.47136 * 299.99785 * 22 20 19 38 38 H 1.09001 * 109.47234 * 59.99811 * 22 20 19 39 39 H 1.09007 * 115.54853 * 29.32970 * 23 22 20 40 40 H 1.08998 * 117.49388 * 0.02562 * 24 23 22 41 41 H 1.08997 * 117.50122 * 145.01784 * 24 23 22 42 42 H 1.09003 * 117.49524 * 252.50882 * 25 24 23 43 43 H 1.09002 * 117.51773 * 107.48191 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6098 1.9816 1.3941 5 1 3.4871 1.4753 -0.8092 6 1 1.3959 2.6824 -0.5848 7 6 2.0103 -1.2021 -0.0005 8 1 1.5486 -2.0921 -0.4021 9 7 3.2803 -1.2596 0.5081 10 6 3.9730 -0.1971 1.2783 11 6 5.3303 -0.7903 1.7504 12 6 5.0432 -2.2969 1.7055 13 1 4.4586 -2.6118 2.5698 14 6 4.2036 -2.3729 0.4026 15 1 4.8671 -2.1977 -0.4443 16 6 3.6808 -3.7782 0.2655 17 6 4.8830 -4.7214 0.0847 18 6 5.8775 -4.5884 1.2361 19 7 6.1930 -3.1692 1.5044 20 6 7.4599 -2.7124 1.5590 21 8 7.6725 -1.5393 1.7813 22 6 8.6122 -3.6595 1.3439 23 6 9.9310 -2.8921 1.4569 24 6 10.8128 -2.8151 0.2090 25 6 11.2275 -3.7012 1.3852 26 1 -0.4849 -0.8388 0.0462 27 1 4.1474 0.6703 0.6417 28 1 3.3714 0.0895 2.1409 29 1 6.1328 -0.5251 1.0622 30 1 5.5659 -0.4673 2.7645 31 1 3.0216 -3.8477 -0.5998 32 1 3.1346 -4.0430 1.1709 33 1 5.3873 -4.4803 -0.8510 34 1 4.5242 -5.7497 0.0410 35 1 6.7955 -5.1166 0.9786 36 1 5.4483 -5.0353 2.1329 37 1 8.5827 -4.4450 2.0989 38 1 8.5356 -4.1056 0.3523 39 1 9.9150 -2.0245 2.1166 40 1 10.4531 -3.3108 -0.6927 41 1 11.3769 -1.8966 0.0473 42 1 12.0647 -3.3657 1.9973 43 1 11.1410 -4.7803 1.2578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049285286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:16 Heat of formation + Delta-G solvation = 4.030358 kcal Electronic energy + Delta-G solvation = -22861.285123 eV Core-core repulsion = 19714.248735 eV Total energy + Delta-G solvation = -3147.036389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79052 -39.65010 -37.83682 -37.07866 -34.62575 -33.93288 -31.77734 -30.16654 -29.81054 -26.09295 -25.77800 -23.42984 -23.17693 -22.80307 -21.77031 -21.13751 -19.99190 -19.30349 -17.59698 -17.42924 -16.85886 -16.55376 -16.45439 -15.91014 -15.67569 -15.46962 -14.91467 -14.77657 -14.54334 -14.40372 -13.94543 -13.59209 -13.45066 -13.29890 -13.05561 -12.73169 -12.42222 -12.33810 -12.30812 -12.15609 -11.97246 -11.79400 -11.61289 -11.46019 -11.22316 -11.18350 -10.84707 -10.72249 -10.37073 -9.58939 -9.14242 -8.67736 -5.43631 1.37356 1.45865 1.64868 1.68659 1.94169 2.48985 2.92925 2.97811 3.19089 3.46716 3.75536 3.80483 3.87410 3.87979 4.01848 4.08405 4.12257 4.19530 4.22940 4.36822 4.38579 4.52424 4.60419 4.64971 4.70117 4.74561 4.77593 4.82942 4.84303 4.93268 5.01520 5.06932 5.09086 5.20409 5.21651 5.30768 5.38939 5.40615 5.48661 5.68358 6.08450 6.53495 6.76846 7.24673 7.46606 8.13250 8.84463 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.005067 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.305108 B = 5524.583639 C = 6259.872700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 1.095 2.905 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.302 1.302 7 C -0.310 4.310 8 H 0.058 0.942 9 N -0.618 5.618 10 C 0.099 3.901 11 C -0.099 4.099 12 C 0.132 3.868 13 H 0.082 0.918 14 C 0.149 3.851 15 H 0.000 1.000 16 C -0.113 4.113 17 C -0.119 4.119 18 C 0.106 3.894 19 N -0.603 5.603 20 C 0.510 3.490 21 O -0.575 6.575 22 C -0.096 4.096 23 C -0.159 4.159 24 C -0.188 4.188 25 C -0.158 4.158 26 H 0.252 0.748 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.656 -14.772 3.690 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.263 4.263 3 Si 0.924 3.076 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.230 1.230 7 C -0.438 4.438 8 H 0.076 0.924 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.137 4.137 12 C 0.026 3.974 13 H 0.100 0.900 14 C 0.041 3.959 15 H 0.017 0.983 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.014 4.014 19 N -0.336 5.336 20 C 0.301 3.699 21 O -0.455 6.455 22 C -0.135 4.135 23 C -0.178 4.178 24 C -0.225 4.225 25 C -0.195 4.195 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.116 0.884 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.526 -12.547 3.714 25.191 hybrid contribution -0.771 -1.045 -0.280 1.329 sum 20.755 -13.592 3.434 25.046 Atomic orbital electron populations 1.70992 1.06988 1.28551 1.53038 1.26710 0.96292 1.03662 0.99640 0.83404 0.73029 0.73683 0.77469 1.20078 1.21333 1.22985 1.19932 0.89060 0.96366 1.38421 0.92417 1.44468 1.13158 1.14131 1.62669 1.22409 0.93545 0.92265 0.94330 1.22491 0.94632 0.94158 1.02396 1.21835 0.86944 0.90982 0.97619 0.90012 1.20723 0.90605 0.89699 0.94893 0.98263 1.21288 0.98746 0.93921 1.01162 1.21874 0.94508 1.00370 0.98983 1.22061 1.01152 0.79242 0.98993 1.48118 1.04421 1.10708 1.70361 1.21344 0.83946 0.89278 0.75355 1.90658 1.84754 1.19603 1.50464 1.21281 0.89170 0.97256 1.05841 1.21992 0.90972 1.02091 1.02738 1.23109 1.03899 1.02376 0.93142 1.23077 0.96713 0.98884 1.00843 0.93909 0.95669 0.94564 0.90140 0.90126 0.93831 0.92326 0.91768 0.87221 0.85775 0.89565 0.85637 0.86737 0.89244 0.87975 0.89558 0.88353 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.94 13.71 21.65 0.30 -61.65 16 2 C -0.07 -4.18 5.45 84.86 0.46 -3.72 16 3 Si 1.10 57.22 24.65 68.60 1.69 58.91 16 4 H -0.27 -13.37 6.64 99.48 0.66 -12.71 16 5 H -0.29 -14.48 6.56 99.48 0.65 -13.83 16 6 H -0.30 -15.75 7.11 99.48 0.71 -15.05 16 7 C -0.31 -18.28 10.17 84.04 0.85 -17.42 16 8 H 0.06 3.58 7.59 -2.91 -0.02 3.56 16 9 N -0.62 -31.54 3.24 -672.05 -2.18 -33.72 16 10 C 0.10 4.67 4.93 86.86 0.43 5.09 16 11 C -0.10 -3.88 4.98 31.59 0.16 -3.72 16 12 C 0.13 4.60 3.30 46.03 0.15 4.75 16 13 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 14 C 0.15 6.07 2.59 45.23 0.12 6.19 16 15 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 16 C -0.11 -3.74 5.39 30.10 0.16 -3.58 16 17 C -0.12 -2.42 5.94 30.79 0.18 -2.24 16 18 C 0.11 1.76 6.32 86.03 0.54 2.30 16 19 N -0.60 -15.67 2.94 -791.78 -2.32 -17.99 16 20 C 0.51 13.40 7.69 87.66 0.67 14.07 16 21 O -0.58 -20.07 12.41 -3.03 -0.04 -20.11 16 22 C -0.10 -1.50 4.40 29.85 0.13 -1.37 16 23 C -0.16 -2.89 5.41 -10.80 -0.06 -2.95 16 24 C -0.19 -3.00 10.18 30.59 0.31 -2.69 16 25 C -0.16 -1.95 10.25 30.59 0.31 -1.63 16 26 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 27 H 0.03 1.26 4.24 -2.39 -0.01 1.25 16 28 H 0.04 1.76 7.45 -2.39 -0.02 1.74 16 29 H 0.08 3.35 6.27 -2.39 -0.01 3.34 16 30 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 31 H 0.04 1.63 7.82 -2.39 -0.02 1.61 16 32 H 0.06 1.96 8.12 -2.38 -0.02 1.95 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.12 1.05 6.18 -2.39 -0.01 1.03 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.13 1.21 8.02 -2.39 -0.02 1.19 16 38 H 0.11 1.32 7.49 -2.39 -0.02 1.30 16 39 H 0.09 2.16 7.30 -2.38 -0.02 2.14 16 40 H 0.10 1.42 8.03 -2.39 -0.02 1.40 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -76.55 324.61 2.73 -73.82 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.85 Total: 7.65 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.43 Total: -6.91 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.20 Total: -113.36 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 14 Polarization: 57.22 SS G_CDS: 1.69 Total: 58.91 kcal Total: -76.55 2.73 -73.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.853 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds