Wall clock time and date at job start Tue Mar 31 2020 00:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47338 * 270.00161 * 3 2 1 5 5 H 1.48505 * 109.46975 * 30.00595 * 3 2 1 6 6 H 1.48507 * 109.46683 * 149.99867 * 3 2 1 7 7 C 1.38811 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99925 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.48374 * 126.56224 * 0.02637 * 9 7 2 11 11 C 1.55477 * 106.97511 * 185.50249 * 10 9 7 12 12 C 1.53425 * 101.67184 * 22.59666 * 11 10 9 13 13 H 1.09005 * 111.74844 * 78.22941 * 12 11 10 14 14 C 1.45029 * 126.55895 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.70944 * 264.12447 * 14 9 7 16 16 C 1.51080 * 119.19288 * 28.88710 * 14 9 7 17 17 C 1.53875 * 107.34524 * 183.92454 * 16 14 9 18 18 C 1.52715 * 111.47606 * 302.97440 * 17 16 14 19 19 N 1.45720 * 116.38126 * 207.26356 * 12 11 10 20 20 C 1.34783 * 122.22699 * 350.14161 * 19 12 11 21 21 O 1.21282 * 120.00030 * 359.97438 * 20 19 12 22 22 C 1.50703 * 119.99916 * 179.97438 * 20 19 12 23 23 C 1.52993 * 109.46971 * 180.02562 * 22 20 19 24 24 C 1.53006 * 117.49848 * 243.62401 * 23 22 20 25 25 C 1.53007 * 60.00050 * 252.50948 * 24 23 22 26 26 H 0.96999 * 120.00150 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.96209 * 304.87919 * 10 9 7 28 28 H 1.09000 * 109.96722 * 66.08666 * 10 9 7 29 29 H 1.08998 * 110.98635 * 264.50310 * 11 10 9 30 30 H 1.09004 * 110.98600 * 140.69492 * 11 10 9 31 31 H 1.08997 * 109.93208 * 64.43687 * 16 14 9 32 32 H 1.08994 * 109.82546 * 303.35315 * 16 14 9 33 33 H 1.09002 * 109.06845 * 182.48058 * 17 16 14 34 34 H 1.09001 * 109.06862 * 63.46783 * 17 16 14 35 35 H 1.08997 * 109.16466 * 168.97125 * 18 17 16 36 36 H 1.09001 * 109.15984 * 288.16229 * 18 17 16 37 37 H 1.09004 * 109.47278 * 300.00178 * 22 20 19 38 38 H 1.08992 * 109.46872 * 59.99879 * 22 20 19 39 39 H 1.09004 * 115.55387 * 29.32939 * 23 22 20 40 40 H 1.09007 * 117.49624 * 359.97438 * 24 23 22 41 41 H 1.08997 * 117.49886 * 145.02107 * 24 23 22 42 42 H 1.08995 * 117.50089 * 252.51283 * 25 24 23 43 43 H 1.08996 * 117.51577 * 107.47649 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1485 -2.5576 -0.0028 11 6 -0.4304 -4.0800 0.1389 12 6 0.8706 -4.5781 0.7816 13 1 0.9023 -4.3614 1.8495 14 6 1.9024 -3.7186 -0.0028 15 1 1.9445 -4.0805 -1.0301 16 6 3.2550 -3.9359 0.6342 17 6 3.6450 -5.4047 0.3930 18 6 2.5917 -6.3612 0.9478 19 7 1.2340 -5.9643 0.5175 20 6 0.3891 -6.8273 -0.0810 21 8 -0.7158 -6.4585 -0.4188 22 6 0.8175 -8.2505 -0.3304 23 6 -0.3180 -9.0118 -1.0171 24 6 -0.9428 -10.1842 -0.2581 25 6 -0.0372 -10.4484 -1.4627 26 1 -0.4850 0.8400 0.0004 27 1 -0.5858 -2.0184 0.8376 28 1 -0.5650 -2.1871 -0.9395 29 1 -0.5852 -4.5408 -0.8367 30 1 -1.2832 -4.2598 0.7936 31 1 3.1977 -3.7385 1.7046 32 1 3.9907 -3.2766 0.1736 33 1 4.5994 -5.6044 0.8804 34 1 3.7505 -5.5739 -0.6786 35 1 2.8002 -7.3695 0.5903 36 1 2.6382 -6.3520 2.0368 37 1 1.6990 -8.2575 -0.9715 38 1 1.0549 -8.7301 0.6191 39 1 -0.9760 -8.4100 -1.6441 40 1 -0.5445 -10.4133 0.7304 41 1 -2.0120 -10.3537 -0.3855 42 1 -0.5106 -10.7916 -2.3826 43 1 0.9566 -10.8508 -1.2669 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049285287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:19 Heat of formation + Delta-G solvation = 22.173135 kcal Electronic energy + Delta-G solvation = -22743.853586 eV Core-core repulsion = 19597.603928 eV Total energy + Delta-G solvation = -3146.249659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.33339 -38.19818 -36.81245 -35.39236 -32.57754 -32.23057 -29.93452 -28.50437 -28.06479 -24.49848 -24.34741 -22.51047 -21.53236 -21.43357 -20.21826 -19.64593 -18.71051 -16.85994 -16.32627 -15.69595 -15.55219 -14.99401 -14.77159 -14.22661 -14.08863 -14.00524 -13.54594 -13.40204 -13.09382 -12.43544 -12.28775 -12.16778 -11.80796 -11.66439 -11.58626 -11.49043 -11.06323 -10.83937 -10.67467 -10.51737 -10.47146 -10.38299 -10.09441 -10.06826 -9.95067 -9.80967 -9.58911 -8.92584 -8.55376 -8.17253 -6.79844 -5.67337 -3.01629 2.89762 3.18532 3.41847 3.46355 3.48578 3.70599 4.47162 4.52387 4.61281 4.80117 4.84687 4.98895 5.10022 5.28559 5.30918 5.37495 5.42382 5.47135 5.48249 5.54660 5.63681 5.69662 5.79266 5.79822 5.89906 5.96482 6.02450 6.11915 6.23469 6.29446 6.32300 6.42176 6.59877 6.75338 6.82909 6.93213 7.22744 7.61277 7.68866 7.77785 7.87697 8.28075 8.50517 9.22128 9.86089 10.54751 11.44664 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.004407 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.930206 B = 6352.290285 C = 6967.204601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.116 3.884 13 H 0.078 0.922 14 C 0.159 3.841 15 H 0.016 0.984 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.602 5.602 20 C 0.517 3.483 21 O -0.531 6.531 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.179 4.179 25 C -0.183 4.183 26 H 0.252 0.748 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 -19.029 1.450 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.047 3.953 11 C -0.167 4.167 12 C 0.012 3.988 13 H 0.096 0.904 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.012 4.012 19 N -0.336 5.336 20 C 0.305 3.695 21 O -0.407 6.407 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.216 4.216 25 C -0.220 4.220 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.968 -18.590 1.262 19.050 hybrid contribution 0.609 0.905 0.076 1.093 sum 4.577 -17.685 1.338 18.316 Atomic orbital electron populations 1.69951 1.04885 1.25024 1.56822 1.24803 0.95663 0.97607 1.02303 0.86152 0.78558 0.83691 0.77540 1.21659 1.21704 1.20729 1.18989 0.90317 0.82255 1.43908 0.90391 1.44082 1.01827 0.99333 1.86517 1.21749 0.83599 0.88885 1.01043 1.22944 0.94559 0.97770 1.01391 1.22393 0.98677 0.78700 0.99031 0.90432 1.20761 0.91446 0.87216 0.95667 0.96624 1.21438 0.98622 0.94170 1.01249 1.21905 0.97633 0.95785 1.01525 1.21690 0.81795 0.98258 0.99448 1.48046 1.14386 1.11558 1.59596 1.20407 0.84743 0.86996 0.77402 1.90687 1.21005 1.78009 1.51032 1.21257 0.98894 0.93077 1.01726 1.22078 1.00283 0.89901 1.03263 1.23013 0.99204 1.03078 0.96277 1.22987 1.00978 0.99041 0.98989 0.93742 0.92606 0.94322 0.89997 0.92179 0.91813 0.91518 0.90954 0.91834 0.90419 0.91635 0.88837 0.89243 0.86309 0.88996 0.88842 0.88805 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 10.46 55.49 0.58 -26.90 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 8 H 0.08 2.07 7.31 -52.48 -0.38 1.69 16 9 N -0.59 -15.38 3.35 -163.26 -0.55 -15.92 16 10 C 0.17 4.41 5.47 -1.69 -0.01 4.40 16 11 C -0.13 -2.78 5.01 -25.19 -0.13 -2.90 16 12 C 0.12 2.24 3.33 -66.79 -0.22 2.01 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.33 2.58 -68.35 -0.18 3.15 16 15 H 0.02 0.37 8.03 -51.93 -0.42 -0.05 16 16 C -0.12 -1.98 5.45 -27.24 -0.15 -2.13 16 17 C -0.13 -1.60 5.92 -26.42 -0.16 -1.76 16 18 C 0.11 1.27 6.32 -3.44 -0.02 1.25 16 19 N -0.60 -9.32 2.91 -163.98 -0.48 -9.80 16 20 C 0.52 8.02 7.69 -10.98 -0.08 7.94 16 21 O -0.53 -10.20 12.39 5.56 0.07 -10.13 16 22 C -0.11 -1.19 4.40 -27.89 -0.12 -1.31 16 23 C -0.14 -1.52 5.41 -90.62 -0.49 -2.01 16 24 C -0.18 -1.69 10.18 -26.72 -0.27 -1.96 16 25 C -0.18 -1.58 10.25 -26.72 -0.27 -1.85 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.06 1.56 7.19 -51.93 -0.37 1.18 16 28 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 29 H 0.08 1.86 6.21 -51.93 -0.32 1.54 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.65 6.18 -51.93 -0.32 0.33 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.87 7.75 -51.93 -0.40 0.46 16 38 H 0.09 0.79 7.75 -51.93 -0.40 0.39 16 39 H 0.12 1.60 7.31 -51.93 -0.38 1.22 16 40 H 0.09 0.78 8.03 -51.92 -0.42 0.37 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -32.12 330.25 -9.93 -42.05 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.16 Total: 0.47 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.35 Total: -1.93 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.44 Total: -52.62 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.12 -9.93 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.224 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds