Wall clock time and date at job start Tue Mar 31 2020 00:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47338 * 270.00161 * 3 2 1 5 5 H 1.48505 * 109.46975 * 30.00595 * 3 2 1 6 6 H 1.48507 * 109.46683 * 149.99867 * 3 2 1 7 7 C 1.38811 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99925 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.48374 * 126.56224 * 0.02637 * 9 7 2 11 11 C 1.55477 * 106.97511 * 185.50249 * 10 9 7 12 12 C 1.53425 * 101.67184 * 22.59666 * 11 10 9 13 13 H 1.09005 * 111.74844 * 78.22941 * 12 11 10 14 14 C 1.45029 * 126.55895 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.70944 * 264.12447 * 14 9 7 16 16 C 1.51080 * 119.19288 * 28.88710 * 14 9 7 17 17 C 1.53875 * 107.34524 * 183.92454 * 16 14 9 18 18 C 1.52715 * 111.47606 * 302.97440 * 17 16 14 19 19 N 1.45720 * 116.38126 * 207.26356 * 12 11 10 20 20 C 1.34783 * 122.22699 * 350.14161 * 19 12 11 21 21 O 1.21282 * 120.00030 * 359.97438 * 20 19 12 22 22 C 1.50703 * 119.99916 * 179.97438 * 20 19 12 23 23 C 1.52993 * 109.46971 * 180.02562 * 22 20 19 24 24 C 1.53006 * 117.49848 * 243.62401 * 23 22 20 25 25 C 1.53007 * 60.00050 * 252.50948 * 24 23 22 26 26 H 0.96999 * 120.00150 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.96209 * 304.87919 * 10 9 7 28 28 H 1.09000 * 109.96722 * 66.08666 * 10 9 7 29 29 H 1.08998 * 110.98635 * 264.50310 * 11 10 9 30 30 H 1.09004 * 110.98600 * 140.69492 * 11 10 9 31 31 H 1.08997 * 109.93208 * 64.43687 * 16 14 9 32 32 H 1.08994 * 109.82546 * 303.35315 * 16 14 9 33 33 H 1.09002 * 109.06845 * 182.48058 * 17 16 14 34 34 H 1.09001 * 109.06862 * 63.46783 * 17 16 14 35 35 H 1.08997 * 109.16466 * 168.97125 * 18 17 16 36 36 H 1.09001 * 109.15984 * 288.16229 * 18 17 16 37 37 H 1.09004 * 109.47278 * 300.00178 * 22 20 19 38 38 H 1.08992 * 109.46872 * 59.99879 * 22 20 19 39 39 H 1.09004 * 115.55387 * 29.32939 * 23 22 20 40 40 H 1.09007 * 117.49624 * 359.97438 * 24 23 22 41 41 H 1.08997 * 117.49886 * 145.02107 * 24 23 22 42 42 H 1.08995 * 117.50089 * 252.51283 * 25 24 23 43 43 H 1.08996 * 117.51577 * 107.47649 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1485 -2.5576 -0.0028 11 6 -0.4304 -4.0800 0.1389 12 6 0.8706 -4.5781 0.7816 13 1 0.9023 -4.3614 1.8495 14 6 1.9024 -3.7186 -0.0028 15 1 1.9445 -4.0805 -1.0301 16 6 3.2550 -3.9359 0.6342 17 6 3.6450 -5.4047 0.3930 18 6 2.5917 -6.3612 0.9478 19 7 1.2340 -5.9643 0.5175 20 6 0.3891 -6.8273 -0.0810 21 8 -0.7158 -6.4585 -0.4188 22 6 0.8175 -8.2505 -0.3304 23 6 -0.3180 -9.0118 -1.0171 24 6 -0.9428 -10.1842 -0.2581 25 6 -0.0372 -10.4484 -1.4627 26 1 -0.4850 0.8400 0.0004 27 1 -0.5858 -2.0184 0.8376 28 1 -0.5650 -2.1871 -0.9395 29 1 -0.5852 -4.5408 -0.8367 30 1 -1.2832 -4.2598 0.7936 31 1 3.1977 -3.7385 1.7046 32 1 3.9907 -3.2766 0.1736 33 1 4.5994 -5.6044 0.8804 34 1 3.7505 -5.5739 -0.6786 35 1 2.8002 -7.3695 0.5903 36 1 2.6382 -6.3520 2.0368 37 1 1.6990 -8.2575 -0.9715 38 1 1.0549 -8.7301 0.6191 39 1 -0.9760 -8.4100 -1.6441 40 1 -0.5445 -10.4133 0.7304 41 1 -2.0120 -10.3537 -0.3855 42 1 -0.5106 -10.7916 -2.3826 43 1 0.9566 -10.8508 -1.2669 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049285287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:18 Heat of formation + Delta-G solvation = 2.691404 kcal Electronic energy + Delta-G solvation = -22744.698378 eV Core-core repulsion = 19597.603928 eV Total energy + Delta-G solvation = -3147.094450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67444 -39.50781 -37.79175 -36.90358 -34.29350 -33.82951 -31.40803 -30.03093 -29.46981 -26.39932 -25.78674 -23.17691 -22.88211 -22.79134 -21.63729 -21.19279 -19.91168 -18.62778 -17.50774 -17.19602 -16.84291 -16.54027 -16.09424 -15.78130 -15.35279 -15.31476 -14.81133 -14.68239 -14.35713 -14.18415 -13.78033 -13.39355 -13.26198 -13.15020 -12.88484 -12.73040 -12.39796 -12.28126 -12.21476 -12.07488 -11.92024 -11.76436 -11.70673 -11.55194 -11.40584 -11.20803 -10.84488 -10.76959 -10.26408 -9.50857 -8.92288 -7.85041 -5.22425 1.44830 1.47655 1.56207 1.73455 2.01424 2.49982 2.96708 3.33522 3.35622 3.61470 3.81012 3.90819 4.02220 4.03998 4.11303 4.11988 4.24015 4.26743 4.35980 4.55355 4.58024 4.59817 4.68059 4.71042 4.76298 4.84907 4.88309 4.94080 5.04366 5.08108 5.13626 5.17054 5.29325 5.32185 5.40010 5.45688 5.47742 5.57974 5.63098 5.72798 6.16904 6.60431 7.03988 7.30985 7.74454 8.44963 9.26890 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.004407 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.930206 B = 6352.290285 C = 6967.204601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.234 4.234 8 H 0.090 0.910 9 N -0.613 5.613 10 C 0.182 3.818 11 C -0.111 4.111 12 C 0.132 3.868 13 H 0.077 0.923 14 C 0.152 3.848 15 H -0.003 1.003 16 C -0.113 4.113 17 C -0.120 4.120 18 C 0.104 3.896 19 N -0.604 5.604 20 C 0.506 3.494 21 O -0.579 6.579 22 C -0.094 4.094 23 C -0.164 4.164 24 C -0.181 4.181 25 C -0.161 4.161 26 H 0.246 0.754 27 H 0.025 0.975 28 H -0.003 1.003 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -22.010 2.456 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.363 4.363 8 H 0.108 0.892 9 N -0.338 5.338 10 C 0.057 3.943 11 C -0.149 4.149 12 C 0.026 3.974 13 H 0.095 0.905 14 C 0.044 3.956 15 H 0.014 0.986 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.016 4.016 19 N -0.337 5.337 20 C 0.297 3.703 21 O -0.459 6.459 22 C -0.133 4.133 23 C -0.183 4.183 24 C -0.218 4.218 25 C -0.198 4.198 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.015 0.985 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.232 -21.628 2.275 22.919 hybrid contribution -0.430 1.798 -0.293 1.871 sum 6.802 -19.831 1.982 21.058 Atomic orbital electron populations 1.70191 1.06603 1.25287 1.58429 1.25727 0.96544 1.01287 1.02743 0.85043 0.77807 0.78908 0.77373 1.21557 1.22251 1.18689 1.19436 0.91050 0.83168 1.42629 0.89248 1.44358 1.01995 1.01035 1.86383 1.21442 0.84045 0.91273 0.97560 1.22654 0.96404 0.94725 1.01160 1.21952 0.95860 0.81397 0.98216 0.90468 1.20953 0.94473 0.84871 0.95283 0.98567 1.21431 0.95388 0.97838 1.00477 1.21895 0.99684 0.92093 1.02220 1.22085 0.78744 1.00009 1.00788 1.48178 1.16358 1.09542 1.59584 1.21397 0.84026 0.88799 0.76091 1.90670 1.23307 1.79178 1.52788 1.21266 0.99246 0.89112 1.03724 1.21982 1.00935 0.90864 1.04481 1.23117 0.99320 1.01858 0.97482 1.23083 1.01882 0.96181 0.98625 0.94486 0.95667 0.98455 0.91221 0.92096 0.91842 0.92692 0.86998 0.91847 0.85979 0.89715 0.86327 0.85992 0.89886 0.87403 0.89513 0.88596 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.13 10.46 21.65 0.23 -59.90 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 3 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.23 -13.34 9.94 84.03 0.84 -12.50 16 8 H 0.09 4.76 7.31 -2.91 -0.02 4.74 16 9 N -0.61 -33.06 3.35 -670.44 -2.25 -35.31 16 10 C 0.18 10.03 5.47 86.87 0.48 10.51 16 11 C -0.11 -5.07 5.01 31.59 0.16 -4.91 16 12 C 0.13 5.06 3.33 46.15 0.15 5.21 16 13 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 14 C 0.15 6.45 2.58 45.51 0.12 6.57 16 15 H 0.00 -0.14 8.03 -2.39 -0.02 -0.16 16 16 C -0.11 -3.65 5.45 30.26 0.16 -3.48 16 17 C -0.12 -2.45 5.92 30.79 0.18 -2.27 16 18 C 0.10 1.87 6.32 86.02 0.54 2.41 16 19 N -0.60 -17.35 2.91 -791.08 -2.30 -19.65 16 20 C 0.51 14.94 7.69 87.66 0.67 15.61 16 21 O -0.58 -22.78 12.39 -3.03 -0.04 -22.82 16 22 C -0.09 -1.69 4.40 29.85 0.13 -1.55 16 23 C -0.16 -3.35 5.41 -10.79 -0.06 -3.40 16 24 C -0.18 -2.98 10.18 30.60 0.31 -2.67 16 25 C -0.16 -2.24 10.25 30.60 0.31 -1.93 16 26 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.03 1.51 7.19 -2.39 -0.02 1.50 16 28 H 0.00 -0.17 7.81 -2.39 -0.02 -0.19 16 29 H 0.07 3.37 6.21 -2.39 -0.01 3.35 16 30 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.06 2.05 8.11 -2.39 -0.02 2.03 16 32 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.12 1.20 6.18 -2.39 -0.01 1.18 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.56 7.75 -2.38 -0.02 1.54 16 38 H 0.12 1.44 7.75 -2.39 -0.02 1.42 16 39 H 0.08 2.30 7.31 -2.38 -0.02 2.28 16 40 H 0.11 1.43 8.03 -2.38 -0.02 1.41 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.59 330.25 3.11 -73.48 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.98 Total: 11.63 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 4.47 Total: 3.93 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.32 Total: -114.87 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.04 Total: -22.82 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.59 3.11 -73.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.167 kcal (2) G-P(sol) polarization free energy of solvation -76.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds