Wall clock time and date at job start Tue Mar 31 2020 00:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 120.00027 * 2 1 4 4 H 1.48491 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47182 * 300.00336 * 3 2 1 6 6 H 1.48506 * 109.47061 * 59.99841 * 3 2 1 7 7 C 1.38810 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.46886 * 125.58181 * 359.97438 * 9 7 2 11 11 C 1.54061 * 107.70521 * 177.04357 * 10 9 7 12 12 C 1.54559 * 103.67307 * 342.84708 * 11 10 9 13 13 H 1.09003 * 108.79575 * 273.79721 * 12 11 10 14 14 C 1.47658 * 125.58215 * 179.97438 * 9 7 2 15 15 H 1.08996 * 110.56736 * 322.57991 * 14 9 7 16 16 C 1.52927 * 107.98460 * 83.59342 * 14 9 7 17 17 C 1.52947 * 109.79077 * 171.84035 * 16 14 9 18 18 C 1.53054 * 108.49635 * 294.01183 * 17 16 14 19 19 N 1.44189 * 111.48062 * 153.28112 * 12 11 10 20 20 C 1.34784 * 117.75667 * 93.66376 * 19 12 11 21 21 O 1.21277 * 119.99939 * 359.73846 * 20 19 12 22 22 C 1.50697 * 119.99654 * 179.73946 * 20 19 12 23 23 C 1.53003 * 109.47004 * 180.02562 * 22 20 19 24 24 C 1.53001 * 117.51964 * 116.28325 * 23 22 20 25 25 C 1.52999 * 60.00190 * 107.47982 * 24 23 22 26 26 H 0.97000 * 120.00008 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.81324 * 296.59453 * 10 9 7 28 28 H 1.08997 * 109.81125 * 57.43098 * 10 9 7 29 29 H 1.08999 * 110.57061 * 101.43659 * 11 10 9 30 30 H 1.09002 * 110.56855 * 224.30411 * 11 10 9 31 31 H 1.09004 * 109.42116 * 51.74582 * 16 14 9 32 32 H 1.09000 * 109.42546 * 291.94068 * 16 14 9 33 33 H 1.08996 * 109.63585 * 174.30843 * 17 16 14 34 34 H 1.08997 * 109.62960 * 53.71106 * 17 16 14 35 35 H 1.08995 * 109.45682 * 293.77654 * 18 17 16 36 36 H 1.08999 * 109.45690 * 173.82404 * 18 17 16 37 37 H 1.08999 * 109.47487 * 59.99788 * 22 20 19 38 38 H 1.09005 * 109.47152 * 299.99767 * 22 20 19 39 39 H 1.09002 * 115.54973 * 330.58108 * 23 22 20 40 40 H 1.09001 * 117.49733 * 214.97413 * 24 23 22 41 41 H 1.08995 * 117.49577 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.50150 * 252.51496 * 25 24 23 43 43 H 1.09004 * 117.49681 * 107.48417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1363 -2.5309 0.0005 11 6 -0.4601 -4.0352 -0.0756 12 6 0.8635 -4.6698 -0.5597 13 1 0.8907 -4.6375 -1.6489 14 6 1.9360 -3.7326 -0.0016 15 1 2.8318 -3.7459 -0.6224 16 6 2.2801 -4.0961 1.4434 17 6 2.7269 -5.5570 1.5176 18 6 1.5341 -6.4481 1.1633 19 7 0.9840 -6.0383 -0.1220 20 6 0.5643 -7.0053 -0.9620 21 8 0.0999 -6.7101 -2.0427 22 6 0.6723 -8.4531 -0.5581 23 6 0.1312 -9.3380 -1.6829 24 6 1.1134 -10.2906 -2.3676 25 6 0.0471 -10.8429 -1.4195 26 1 -0.4850 0.8400 0.0004 27 1 -0.5479 -2.1104 0.9179 28 1 -0.5583 -2.0171 -0.8631 29 1 -0.7326 -4.4185 0.9077 30 1 -1.2587 -4.2191 -0.7943 31 1 1.4011 -3.9537 2.0721 32 1 3.0855 -3.4524 1.7972 33 1 3.0672 -5.7851 2.5276 34 1 3.5360 -5.7289 0.8078 35 1 0.7682 -6.3525 1.9329 36 1 1.8613 -7.4861 1.1040 37 1 0.0915 -8.6218 0.3487 38 1 1.7172 -8.7014 -0.3717 39 1 -0.6485 -8.8906 -2.2993 40 1 0.9799 -10.4698 -3.4345 41 1 2.1454 -10.2868 -2.0170 42 1 0.3775 -11.2025 -0.4450 43 1 -0.7881 -11.3854 -1.8627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049285288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:22 Heat of formation + Delta-G solvation = 14.539127 kcal Electronic energy + Delta-G solvation = -22641.318740 eV Core-core repulsion = 19494.738046 eV Total energy + Delta-G solvation = -3146.580694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47722 -38.28678 -36.92526 -35.37021 -32.55233 -32.34045 -30.00178 -28.74119 -28.07595 -24.50204 -24.36642 -22.53574 -22.02152 -21.41000 -20.15759 -19.58617 -18.06914 -17.15931 -16.88277 -16.05464 -15.50352 -14.90264 -14.75055 -14.41027 -14.01953 -13.91151 -13.63111 -13.38098 -13.01448 -12.73217 -12.27669 -12.06736 -11.93033 -11.67999 -11.56013 -11.34981 -11.02383 -10.94815 -10.76808 -10.65517 -10.50199 -10.44257 -10.14612 -10.06339 -10.02859 -9.64676 -9.55944 -9.42359 -8.59412 -8.26369 -6.85330 -5.70467 -3.05263 2.81067 3.18896 3.40202 3.45656 3.48131 3.67583 4.46051 4.49586 4.57522 4.76400 4.90628 4.96113 5.11240 5.28171 5.28631 5.37573 5.41528 5.45921 5.48899 5.53561 5.58915 5.66539 5.70469 5.77295 5.91999 5.94170 6.01058 6.10270 6.19864 6.25656 6.31273 6.40412 6.60067 6.61002 6.76917 7.01157 7.12553 7.58358 7.59463 7.67487 7.84840 8.25792 8.42015 9.21781 9.81626 10.46723 11.40364 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035693 B = 0.004119 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.282114 B = 6796.601286 C = 7123.353005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.136 3.864 13 H 0.091 0.909 14 C 0.161 3.839 15 H 0.053 0.947 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.108 3.892 19 N -0.589 5.589 20 C 0.506 3.494 21 O -0.539 6.539 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.179 4.179 25 C -0.182 4.182 26 H 0.252 0.748 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 -19.256 2.597 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.032 3.968 13 H 0.109 0.891 14 C 0.053 3.947 15 H 0.071 0.929 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.015 4.015 19 N -0.321 5.321 20 C 0.293 3.707 21 O -0.416 6.416 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.216 4.216 25 C -0.219 4.219 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.166 -18.792 2.031 19.025 hybrid contribution 0.436 0.938 0.206 1.055 sum 2.603 -17.853 2.238 18.180 Atomic orbital electron populations 1.69991 1.04872 1.24919 1.56919 1.24809 0.95710 0.97653 1.02177 0.86043 0.78689 0.83788 0.77219 1.20518 1.21752 1.21795 1.19064 0.90441 0.82149 1.43841 0.90367 1.44526 1.01539 0.99271 1.86703 1.21058 0.84258 0.88085 1.01223 1.23074 0.96613 0.99339 0.99913 1.21118 0.96511 0.79205 0.99992 0.89083 1.20835 0.94004 0.86200 0.93695 0.92861 1.22124 1.01475 0.93418 1.00083 1.21846 0.97032 0.96873 1.01329 1.21505 0.96274 0.98496 0.85196 1.47096 1.61511 1.06412 1.17063 1.20638 0.77952 0.87680 0.84409 1.90675 1.44824 1.83612 1.22462 1.21277 1.02704 0.91777 0.99130 1.22086 1.02914 0.90403 1.00284 1.23017 0.95605 1.04292 0.98666 1.22991 1.01761 0.96187 1.00994 0.93791 0.94220 0.92968 0.92682 0.92001 0.91982 0.91886 0.91140 0.91730 0.91919 0.90400 0.88648 0.88939 0.86388 0.88831 0.88918 0.88862 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.29 55.49 0.57 -26.52 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.25 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.06 2.94 -163.90 -0.48 -15.55 16 10 C 0.18 4.43 5.39 -3.28 -0.02 4.41 16 11 C -0.15 -3.03 6.46 -25.36 -0.16 -3.20 16 12 C 0.14 2.60 2.76 -68.35 -0.19 2.42 16 13 H 0.09 1.96 7.08 -51.93 -0.37 1.59 16 14 C 0.16 3.30 3.27 -67.35 -0.22 3.08 16 15 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.13 -2.27 5.31 -26.80 -0.14 -2.41 16 17 C -0.13 -1.66 6.10 -26.73 -0.16 -1.83 16 18 C 0.11 1.26 6.06 -4.45 -0.03 1.24 16 19 N -0.59 -9.00 2.79 -167.46 -0.47 -9.47 16 20 C 0.51 7.68 7.58 -10.98 -0.08 7.60 16 21 O -0.54 -10.34 14.84 5.56 0.08 -10.26 16 22 C -0.11 -1.14 4.31 -27.88 -0.12 -1.26 16 23 C -0.14 -1.49 5.41 -90.61 -0.49 -1.98 16 24 C -0.18 -1.65 10.18 -26.73 -0.27 -1.92 16 25 C -0.18 -1.51 10.25 -26.73 -0.27 -1.78 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 28 H 0.05 1.45 7.24 -51.93 -0.38 1.07 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.66 5.81 -51.93 -0.30 0.36 16 37 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 38 H 0.09 0.79 7.05 -51.93 -0.37 0.43 16 39 H 0.12 1.53 7.31 -51.93 -0.38 1.15 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.77 8.03 -51.93 -0.42 0.36 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -31.57 334.30 -9.90 -41.47 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.21 Total: 0.53 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.41 Total: -2.34 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.38 Total: -51.53 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.57 -9.90 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.013 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds