Wall clock time and date at job start Tue Mar 31 2020 00:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 120.00027 * 2 1 4 4 H 1.48491 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47182 * 300.00336 * 3 2 1 6 6 H 1.48506 * 109.47061 * 59.99841 * 3 2 1 7 7 C 1.38810 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.46886 * 125.58181 * 359.97438 * 9 7 2 11 11 C 1.54061 * 107.70521 * 177.04357 * 10 9 7 12 12 C 1.54559 * 103.67307 * 342.84708 * 11 10 9 13 13 H 1.09003 * 108.79575 * 273.79721 * 12 11 10 14 14 C 1.47658 * 125.58215 * 179.97438 * 9 7 2 15 15 H 1.08996 * 110.56736 * 322.57991 * 14 9 7 16 16 C 1.52927 * 107.98460 * 83.59342 * 14 9 7 17 17 C 1.52947 * 109.79077 * 171.84035 * 16 14 9 18 18 C 1.53054 * 108.49635 * 294.01183 * 17 16 14 19 19 N 1.44189 * 111.48062 * 153.28112 * 12 11 10 20 20 C 1.34784 * 117.75667 * 93.66376 * 19 12 11 21 21 O 1.21277 * 119.99939 * 359.73846 * 20 19 12 22 22 C 1.50697 * 119.99654 * 179.73946 * 20 19 12 23 23 C 1.53003 * 109.47004 * 180.02562 * 22 20 19 24 24 C 1.53001 * 117.51964 * 116.28325 * 23 22 20 25 25 C 1.52999 * 60.00190 * 107.47982 * 24 23 22 26 26 H 0.97000 * 120.00008 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.81324 * 296.59453 * 10 9 7 28 28 H 1.08997 * 109.81125 * 57.43098 * 10 9 7 29 29 H 1.08999 * 110.57061 * 101.43659 * 11 10 9 30 30 H 1.09002 * 110.56855 * 224.30411 * 11 10 9 31 31 H 1.09004 * 109.42116 * 51.74582 * 16 14 9 32 32 H 1.09000 * 109.42546 * 291.94068 * 16 14 9 33 33 H 1.08996 * 109.63585 * 174.30843 * 17 16 14 34 34 H 1.08997 * 109.62960 * 53.71106 * 17 16 14 35 35 H 1.08995 * 109.45682 * 293.77654 * 18 17 16 36 36 H 1.08999 * 109.45690 * 173.82404 * 18 17 16 37 37 H 1.08999 * 109.47487 * 59.99788 * 22 20 19 38 38 H 1.09005 * 109.47152 * 299.99767 * 22 20 19 39 39 H 1.09002 * 115.54973 * 330.58108 * 23 22 20 40 40 H 1.09001 * 117.49733 * 214.97413 * 24 23 22 41 41 H 1.08995 * 117.49577 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.50150 * 252.51496 * 25 24 23 43 43 H 1.09004 * 117.49681 * 107.48417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1363 -2.5309 0.0005 11 6 -0.4601 -4.0352 -0.0756 12 6 0.8635 -4.6698 -0.5597 13 1 0.8907 -4.6375 -1.6489 14 6 1.9360 -3.7326 -0.0016 15 1 2.8318 -3.7459 -0.6224 16 6 2.2801 -4.0961 1.4434 17 6 2.7269 -5.5570 1.5176 18 6 1.5341 -6.4481 1.1633 19 7 0.9840 -6.0383 -0.1220 20 6 0.5643 -7.0053 -0.9620 21 8 0.0999 -6.7101 -2.0427 22 6 0.6723 -8.4531 -0.5581 23 6 0.1312 -9.3380 -1.6829 24 6 1.1134 -10.2906 -2.3676 25 6 0.0471 -10.8429 -1.4195 26 1 -0.4850 0.8400 0.0004 27 1 -0.5479 -2.1104 0.9179 28 1 -0.5583 -2.0171 -0.8631 29 1 -0.7326 -4.4185 0.9077 30 1 -1.2587 -4.2191 -0.7943 31 1 1.4011 -3.9537 2.0721 32 1 3.0855 -3.4524 1.7972 33 1 3.0672 -5.7851 2.5276 34 1 3.5360 -5.7289 0.8078 35 1 0.7682 -6.3525 1.9329 36 1 1.8613 -7.4861 1.1040 37 1 0.0915 -8.6218 0.3487 38 1 1.7172 -8.7014 -0.3717 39 1 -0.6485 -8.8906 -2.2993 40 1 0.9799 -10.4698 -3.4345 41 1 2.1454 -10.2868 -2.0170 42 1 0.3775 -11.2025 -0.4450 43 1 -0.7881 -11.3854 -1.8627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049285288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:21 Heat of formation + Delta-G solvation = -4.057733 kcal Electronic energy + Delta-G solvation = -22642.125161 eV Core-core repulsion = 19494.738046 eV Total energy + Delta-G solvation = -3147.387115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77719 -39.63430 -37.85081 -36.85967 -34.27428 -33.87862 -31.43267 -30.32545 -29.48360 -26.38887 -25.77069 -23.34813 -23.17147 -22.53199 -21.94877 -20.74043 -19.44999 -18.78069 -18.32155 -17.16465 -16.81668 -16.60728 -16.05784 -16.01268 -15.21920 -15.02988 -14.86032 -14.75399 -14.29715 -14.15323 -13.85774 -13.60495 -13.26523 -13.13272 -12.84524 -12.67054 -12.43274 -12.34268 -12.28228 -12.19611 -12.00244 -11.86853 -11.60914 -11.54736 -11.23988 -11.19022 -10.87856 -10.72843 -10.63467 -9.58151 -8.92761 -7.85623 -5.22721 1.44638 1.46275 1.56404 1.66309 2.00062 2.48848 2.96931 3.31902 3.48135 3.61905 3.81090 3.84307 3.91321 4.02486 4.08751 4.12754 4.16261 4.24543 4.33883 4.51727 4.58576 4.62840 4.67259 4.70269 4.82259 4.84896 4.86131 4.88238 4.96630 5.07218 5.10441 5.21317 5.32819 5.36311 5.40436 5.41625 5.54497 5.61876 5.71233 5.72461 6.17258 6.46391 7.07169 7.24423 7.74122 8.38578 9.24519 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035693 B = 0.004119 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.282114 B = 6796.601286 C = 7123.353005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.236 4.236 8 H 0.085 0.915 9 N -0.617 5.617 10 C 0.192 3.808 11 C -0.134 4.134 12 C 0.154 3.846 13 H 0.058 0.942 14 C 0.156 3.844 15 H 0.046 0.954 16 C -0.121 4.121 17 C -0.122 4.122 18 C 0.102 3.898 19 N -0.589 5.589 20 C 0.499 3.501 21 O -0.589 6.589 22 C -0.095 4.095 23 C -0.165 4.165 24 C -0.184 4.184 25 C -0.159 4.159 26 H 0.246 0.754 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -22.407 4.560 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.364 4.364 8 H 0.102 0.898 9 N -0.342 5.342 10 C 0.066 3.934 11 C -0.174 4.174 12 C 0.048 3.952 13 H 0.076 0.924 14 C 0.049 3.951 15 H 0.064 0.936 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.019 4.019 19 N -0.321 5.321 20 C 0.289 3.711 21 O -0.470 6.470 22 C -0.134 4.134 23 C -0.183 4.183 24 C -0.221 4.221 25 C -0.196 4.196 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.103 -22.005 4.025 22.743 hybrid contribution -0.155 1.887 -0.464 1.950 sum 3.948 -20.118 3.560 20.808 Atomic orbital electron populations 1.70218 1.06412 1.25162 1.58399 1.25680 0.96590 1.01104 1.02658 0.84981 0.78248 0.79320 0.76607 1.18750 1.22235 1.21795 1.19449 0.90979 0.83308 1.42695 0.89751 1.44790 1.01868 1.00767 1.86753 1.20706 0.84295 0.90629 0.97741 1.22867 0.97359 0.96188 1.00938 1.20575 0.94953 0.81684 0.98027 0.92384 1.21049 0.93735 0.84295 0.95995 0.93591 1.21916 1.00508 0.97150 0.96556 1.21821 0.97544 0.92898 1.03747 1.21901 0.96096 1.00661 0.83285 1.47170 1.61766 1.04416 1.18699 1.21630 0.76437 0.89549 0.83442 1.90664 1.46918 1.84589 1.24811 1.21328 1.05073 0.87287 0.99749 1.21997 1.03267 0.92000 1.01072 1.23127 0.96464 1.03710 0.98769 1.23088 1.01107 0.93659 1.01722 0.94472 0.97237 0.97253 0.90674 0.92398 0.93378 0.93125 0.87568 0.91149 0.90674 0.85664 0.85761 0.85773 0.89819 0.89552 0.87442 0.86431 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 10.29 21.65 0.22 -58.68 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 46.56 29.55 68.60 2.03 48.58 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.24 -13.35 10.27 84.03 0.86 -12.49 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.62 -32.41 2.94 -672.45 -1.97 -34.39 16 10 C 0.19 10.09 5.39 86.66 0.47 10.56 16 11 C -0.13 -5.59 6.46 31.48 0.20 -5.38 16 12 C 0.15 5.95 2.76 45.94 0.13 6.07 16 13 H 0.06 2.62 7.08 -2.39 -0.02 2.61 16 14 C 0.16 6.46 3.27 44.74 0.15 6.60 16 15 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 16 C -0.12 -4.04 5.31 30.55 0.16 -3.87 16 17 C -0.12 -2.54 6.10 30.59 0.19 -2.35 16 18 C 0.10 1.87 6.06 86.55 0.52 2.40 16 19 N -0.59 -16.73 2.79 -802.11 -2.24 -18.97 16 20 C 0.50 14.28 7.58 87.66 0.66 14.94 16 21 O -0.59 -23.04 14.84 -3.02 -0.04 -23.09 16 22 C -0.10 -1.60 4.31 29.85 0.13 -1.47 16 23 C -0.16 -3.19 5.41 -10.79 -0.06 -3.25 16 24 C -0.18 -2.91 10.18 30.59 0.31 -2.60 16 25 C -0.16 -2.05 10.25 30.60 0.31 -1.74 16 26 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.01 0.54 7.60 -2.39 -0.02 0.53 16 28 H 0.01 0.55 7.24 -2.39 -0.02 0.54 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 1.73 8.02 -2.38 -0.02 1.71 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.23 5.81 -2.39 -0.01 1.22 16 37 H 0.12 1.43 8.03 -2.39 -0.02 1.41 16 38 H 0.12 1.35 7.05 -2.38 -0.02 1.33 16 39 H 0.08 2.21 7.31 -2.39 -0.02 2.19 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.11 1.38 8.03 -2.39 -0.02 1.36 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -75.28 334.30 3.47 -71.81 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.78 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.51 Total: 3.96 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.99 Total: -112.04 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.28 3.47 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049285288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.749 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds