Wall clock time and date at job start Tue Mar 31 2020 00:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86810 * 119.99733 * 2 1 4 4 H 1.48503 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46987 * 299.99669 * 3 2 1 6 6 H 1.48498 * 109.47264 * 60.00043 * 3 2 1 7 7 C 1.38811 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99631 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.46791 * 125.37487 * 179.97438 * 9 7 2 11 11 C 1.54007 * 107.67489 * 179.23382 * 10 9 7 12 12 H 1.08997 * 110.27223 * 224.59681 * 11 10 9 13 13 C 1.52597 * 109.23019 * 102.57816 * 11 10 9 14 14 C 1.53296 * 108.90777 * 187.87957 * 13 11 10 15 15 C 1.52984 * 107.93483 * 68.47901 * 14 13 11 16 16 N 1.45185 * 110.52410 * 308.76500 * 15 14 13 17 17 C 1.34768 * 116.70796 * 207.66601 * 16 15 14 18 18 O 1.21277 * 120.00274 * 180.02562 * 17 16 15 19 19 C 1.50708 * 120.00101 * 0.02562 * 17 16 15 20 20 C 1.53783 * 113.61360 * 277.49640 * 19 17 16 21 21 C 1.53785 * 87.07822 * 220.01861 * 20 19 17 22 22 C 1.53777 * 113.61316 * 179.97438 * 19 17 16 23 23 C 1.44046 * 126.58545 * 27.69789 * 16 15 14 24 24 H 1.09003 * 109.21345 * 220.88785 * 23 16 15 25 25 C 1.46925 * 125.36841 * 359.97438 * 9 7 2 26 26 H 0.97000 * 120.00661 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.82930 * 298.79887 * 10 9 7 28 28 H 1.09002 * 109.82752 * 59.67237 * 10 9 7 29 29 H 1.08997 * 109.49936 * 68.08913 * 13 11 10 30 30 H 1.08996 * 109.71717 * 307.80019 * 13 11 10 31 31 H 1.09003 * 109.76814 * 308.86911 * 14 13 11 32 32 H 1.09000 * 109.81173 * 188.11146 * 14 13 11 33 33 H 1.09003 * 109.26450 * 188.50036 * 15 14 13 34 34 H 1.08999 * 109.23956 * 69.02473 * 15 14 13 35 35 H 1.08995 * 112.84484 * 48.80433 * 19 17 16 36 36 H 1.08995 * 113.61402 * 334.56599 * 20 19 17 37 37 H 1.08997 * 113.61351 * 105.46742 * 20 19 17 38 38 H 1.09004 * 113.61319 * 270.88282 * 21 20 19 39 39 H 1.08995 * 113.61191 * 139.98375 * 21 20 19 40 40 H 1.08999 * 113.61641 * 254.52716 * 22 19 17 41 41 H 1.09003 * 113.61811 * 25.43322 * 22 19 17 42 42 H 1.09003 * 110.08790 * 317.27718 * 25 9 7 43 43 H 1.08996 * 110.08878 * 78.86174 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9374 -3.7224 0.0005 11 6 0.7986 -4.7589 0.0202 12 1 1.0181 -5.5475 0.7398 13 6 0.6210 -5.3371 -1.3808 14 6 -0.6347 -6.2161 -1.3999 15 6 -1.8515 -5.3030 -1.2386 16 7 -1.6835 -4.4289 -0.0917 17 6 -2.8087 -4.0073 0.5186 18 8 -2.7377 -3.2747 1.4825 19 6 -4.1552 -4.4463 0.0034 20 6 -4.6634 -3.6099 -1.1828 21 6 -6.0571 -3.6851 -0.5371 22 6 -5.3370 -3.8803 0.8081 23 6 -0.4357 -3.9661 0.4596 24 1 -0.4935 -3.9900 1.5478 25 6 -0.1371 -2.5256 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 2.5406 -3.8526 -0.8980 28 1 2.5622 -3.8427 0.8856 29 1 1.4921 -5.9392 -1.6390 30 1 0.5105 -4.5270 -2.1017 31 1 -0.5977 -6.9299 -0.5769 32 1 -0.6976 -6.7500 -2.3482 33 1 -2.7433 -5.9138 -1.0977 34 1 -1.9684 -4.6982 -2.1378 35 1 -4.2149 -5.5220 -0.1617 36 1 -4.2508 -2.6016 -1.2147 37 1 -4.5975 -4.1257 -2.1408 38 1 -6.6376 -4.5525 -0.8513 39 1 -6.6186 -2.7531 -0.6008 40 1 -5.8150 -4.6143 1.4568 41 1 -5.1087 -2.9459 1.3207 42 1 -0.5803 -1.8119 0.6951 43 1 -0.5284 -2.3638 -1.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049947041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:48 Heat of formation + Delta-G solvation = 13.201026 kcal Electronic energy + Delta-G solvation = -23253.027286 eV Core-core repulsion = 20106.388568 eV Total energy + Delta-G solvation = -3146.638719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60453 -38.65998 -36.76640 -35.40191 -32.96881 -31.96319 -29.56503 -27.81273 -26.08734 -25.59860 -25.42743 -23.74897 -21.95299 -20.92780 -20.09272 -18.98251 -17.96447 -17.24465 -16.76478 -15.65902 -15.38514 -15.06976 -14.64752 -14.33247 -14.11697 -13.75278 -13.38802 -13.04739 -12.64136 -12.45689 -12.37119 -12.15135 -12.11907 -11.77089 -11.45839 -11.11663 -11.08578 -10.95796 -10.80928 -10.72289 -10.46120 -10.32908 -10.23793 -10.11224 -9.87280 -9.70351 -9.56981 -9.12683 -8.54819 -8.02719 -6.75760 -5.58422 -2.99404 3.07294 3.42955 3.45046 3.49230 3.52129 4.55021 4.58690 4.65718 4.73358 4.82578 4.86663 5.00867 5.10113 5.18356 5.34722 5.45931 5.53466 5.60323 5.65195 5.69665 5.76078 5.85566 5.88795 5.91794 5.97788 6.04189 6.06364 6.12194 6.15690 6.20143 6.30584 6.45304 6.50664 6.63786 6.72905 6.93430 7.17020 7.60238 7.68365 7.84280 8.03323 8.43243 8.71529 9.29209 9.90371 10.53679 11.46474 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.006346 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.708838 B = 4411.337136 C = 5583.507320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.142 3.858 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.114 3.886 16 N -0.586 5.586 17 C 0.509 3.491 18 O -0.527 6.527 19 C -0.138 4.138 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.118 4.118 23 C 0.126 3.874 24 H 0.076 0.924 25 C 0.165 3.835 26 H 0.251 0.749 27 H 0.025 0.975 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 -14.205 -3.974 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.120 4.120 12 H 0.089 0.911 13 C -0.146 4.146 14 C -0.168 4.168 15 C -0.010 4.010 16 N -0.319 5.319 17 C 0.296 3.704 18 O -0.403 6.403 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.180 4.180 22 C -0.156 4.156 23 C 0.021 3.979 24 H 0.095 0.905 25 C 0.039 3.961 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -8.465 -13.600 -3.472 16.391 hybrid contribution 0.578 0.740 -0.175 0.955 sum -7.887 -12.860 -3.647 15.520 Atomic orbital electron populations 1.69929 1.04791 1.24677 1.56853 1.24832 0.95702 0.97719 1.02244 0.86037 0.78639 0.83826 0.77214 1.20526 1.21820 1.21725 1.19079 0.90442 0.82328 1.43820 0.90372 1.44228 1.01709 0.99892 1.87067 1.21271 0.93488 0.85658 0.98064 1.21852 0.95958 0.97548 0.96633 0.91080 1.21493 0.96853 0.99022 0.97256 1.21845 0.95181 0.97743 1.02016 1.21291 0.98387 0.92300 0.88994 1.46789 1.06230 1.48366 1.30468 1.20525 0.85714 0.80793 0.83364 1.90714 1.86989 1.35537 1.27040 1.22809 0.92712 1.00922 0.99496 1.22817 0.96075 1.00883 0.96186 1.22832 0.96229 1.02033 0.96862 1.22804 0.94285 1.02368 0.96137 1.21336 0.81627 0.97056 0.97862 0.90547 1.21769 0.84292 0.90488 0.99585 0.93818 0.95689 0.95970 0.91858 0.91064 0.91566 0.90775 0.90844 0.92221 0.87449 0.89214 0.91002 0.90255 0.91120 0.91439 0.88548 0.88349 0.96869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 10.18 55.49 0.56 -27.58 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.23 -6.60 10.25 -15.06 -0.15 -6.75 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -16.09 3.39 -171.36 -0.58 -16.67 16 10 C 0.14 3.03 6.83 -3.36 -0.02 3.01 16 11 C -0.10 -1.79 3.05 -90.23 -0.28 -2.06 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.59 4.93 -26.78 -0.13 -1.73 16 14 C -0.13 -1.51 6.13 -26.59 -0.16 -1.67 16 15 C 0.11 1.46 5.65 -4.76 -0.03 1.43 16 16 N -0.59 -10.19 2.84 -168.17 -0.48 -10.66 16 17 C 0.51 9.21 6.92 -10.99 -0.08 9.14 16 18 O -0.53 -11.99 15.17 5.56 0.08 -11.91 16 19 C -0.14 -1.80 2.86 -90.96 -0.26 -2.06 16 20 C -0.12 -1.46 7.48 -25.92 -0.19 -1.66 16 21 C -0.14 -1.46 8.08 -25.90 -0.21 -1.67 16 22 C -0.12 -1.48 7.41 -25.90 -0.19 -1.67 16 23 C 0.13 2.60 2.64 -68.58 -0.18 2.42 16 24 H 0.08 1.74 7.50 -51.93 -0.39 1.35 16 25 C 0.16 4.28 5.00 -3.23 -0.02 4.27 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.03 0.52 7.70 -51.93 -0.40 0.12 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.74 5.86 -51.93 -0.30 0.44 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.11 6.71 -51.93 -0.35 0.76 16 36 H 0.09 1.32 8.09 -51.93 -0.42 0.90 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.46 7.43 -51.93 -0.39 1.07 16 42 H 0.10 3.02 6.24 -51.93 -0.32 2.69 16 43 H 0.01 0.37 8.11 -51.93 -0.42 -0.05 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -33.72 328.46 -9.67 -43.39 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.19 Total: 0.04 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.00 Total: 0.64 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.49 Total: -54.92 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.72 -9.67 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049947041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.588 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds