Wall clock time and date at job start Tue Mar 31 2020 00:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86810 * 119.99733 * 2 1 4 4 H 1.48503 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46987 * 299.99669 * 3 2 1 6 6 H 1.48498 * 109.47264 * 60.00043 * 3 2 1 7 7 C 1.38811 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99631 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.46791 * 125.37487 * 179.97438 * 9 7 2 11 11 C 1.54007 * 107.67489 * 179.23382 * 10 9 7 12 12 H 1.08997 * 110.27223 * 224.59681 * 11 10 9 13 13 C 1.52597 * 109.23019 * 102.57816 * 11 10 9 14 14 C 1.53296 * 108.90777 * 187.87957 * 13 11 10 15 15 C 1.52984 * 107.93483 * 68.47901 * 14 13 11 16 16 N 1.45185 * 110.52410 * 308.76500 * 15 14 13 17 17 C 1.34768 * 116.70796 * 207.66601 * 16 15 14 18 18 O 1.21277 * 120.00274 * 180.02562 * 17 16 15 19 19 C 1.50708 * 120.00101 * 0.02562 * 17 16 15 20 20 C 1.53783 * 113.61360 * 277.49640 * 19 17 16 21 21 C 1.53785 * 87.07822 * 220.01861 * 20 19 17 22 22 C 1.53777 * 113.61316 * 179.97438 * 19 17 16 23 23 C 1.44046 * 126.58545 * 27.69789 * 16 15 14 24 24 H 1.09003 * 109.21345 * 220.88785 * 23 16 15 25 25 C 1.46925 * 125.36841 * 359.97438 * 9 7 2 26 26 H 0.97000 * 120.00661 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.82930 * 298.79887 * 10 9 7 28 28 H 1.09002 * 109.82752 * 59.67237 * 10 9 7 29 29 H 1.08997 * 109.49936 * 68.08913 * 13 11 10 30 30 H 1.08996 * 109.71717 * 307.80019 * 13 11 10 31 31 H 1.09003 * 109.76814 * 308.86911 * 14 13 11 32 32 H 1.09000 * 109.81173 * 188.11146 * 14 13 11 33 33 H 1.09003 * 109.26450 * 188.50036 * 15 14 13 34 34 H 1.08999 * 109.23956 * 69.02473 * 15 14 13 35 35 H 1.08995 * 112.84484 * 48.80433 * 19 17 16 36 36 H 1.08995 * 113.61402 * 334.56599 * 20 19 17 37 37 H 1.08997 * 113.61351 * 105.46742 * 20 19 17 38 38 H 1.09004 * 113.61319 * 270.88282 * 21 20 19 39 39 H 1.08995 * 113.61191 * 139.98375 * 21 20 19 40 40 H 1.08999 * 113.61641 * 254.52716 * 22 19 17 41 41 H 1.09003 * 113.61811 * 25.43322 * 22 19 17 42 42 H 1.09003 * 110.08790 * 317.27718 * 25 9 7 43 43 H 1.08996 * 110.08878 * 78.86174 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9374 -3.7224 0.0005 11 6 0.7986 -4.7589 0.0202 12 1 1.0181 -5.5475 0.7398 13 6 0.6210 -5.3371 -1.3808 14 6 -0.6347 -6.2161 -1.3999 15 6 -1.8515 -5.3030 -1.2386 16 7 -1.6835 -4.4289 -0.0917 17 6 -2.8087 -4.0073 0.5186 18 8 -2.7377 -3.2747 1.4825 19 6 -4.1552 -4.4463 0.0034 20 6 -4.6634 -3.6099 -1.1828 21 6 -6.0571 -3.6851 -0.5371 22 6 -5.3370 -3.8803 0.8081 23 6 -0.4357 -3.9661 0.4596 24 1 -0.4935 -3.9900 1.5478 25 6 -0.1371 -2.5256 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 2.5406 -3.8526 -0.8980 28 1 2.5622 -3.8427 0.8856 29 1 1.4921 -5.9392 -1.6390 30 1 0.5105 -4.5270 -2.1017 31 1 -0.5977 -6.9299 -0.5769 32 1 -0.6976 -6.7500 -2.3482 33 1 -2.7433 -5.9138 -1.0977 34 1 -1.9684 -4.6982 -2.1378 35 1 -4.2149 -5.5220 -0.1617 36 1 -4.2508 -2.6016 -1.2147 37 1 -4.5975 -4.1257 -2.1408 38 1 -6.6376 -4.5525 -0.8513 39 1 -6.6186 -2.7531 -0.6008 40 1 -5.8150 -4.6143 1.4568 41 1 -5.1087 -2.9459 1.3207 42 1 -0.5803 -1.8119 0.6951 43 1 -0.5284 -2.3638 -1.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049947041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:48 Heat of formation + Delta-G solvation = -8.908109 kcal Electronic energy + Delta-G solvation = -23253.986010 eV Core-core repulsion = 20106.388568 eV Total energy + Delta-G solvation = -3147.597443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97872 -40.01176 -38.11240 -37.03352 -34.65157 -33.61939 -31.42355 -29.37933 -27.56259 -27.11539 -26.51521 -25.35331 -23.27018 -22.48918 -21.66087 -20.14778 -19.32306 -18.99404 -18.43663 -17.16954 -16.90221 -16.51799 -16.05055 -15.80993 -15.67929 -15.09584 -14.73737 -14.52809 -14.25177 -13.97621 -13.68923 -13.63377 -13.40968 -13.16730 -13.08557 -12.90013 -12.79731 -12.45716 -12.12633 -12.09231 -11.94726 -11.85077 -11.56530 -11.55421 -11.28973 -11.25803 -11.17924 -10.78670 -10.54685 -9.54291 -8.94721 -7.82990 -5.28089 1.39781 1.42893 1.53340 1.67148 2.08786 2.45751 3.28179 3.45593 3.60436 3.66968 3.72612 3.78011 3.88438 3.93406 3.95895 4.06740 4.08080 4.19989 4.49325 4.56560 4.59646 4.66481 4.77269 4.81983 4.82981 4.87733 4.93440 4.94554 5.03966 5.05345 5.10576 5.17017 5.21393 5.29541 5.37893 5.47793 5.51277 5.55556 5.72270 5.87761 6.20781 6.49293 7.03105 7.31013 7.73601 8.35584 9.20026 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.006346 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.708838 B = 4411.337136 C = 5583.507320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.073 4.073 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.088 0.912 9 N -0.626 5.626 10 C 0.133 3.867 11 C -0.088 4.088 12 H 0.101 0.899 13 C -0.106 4.106 14 C -0.119 4.119 15 C 0.101 3.899 16 N -0.586 5.586 17 C 0.495 3.505 18 O -0.590 6.590 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.128 4.128 23 C 0.141 3.859 24 H 0.046 0.954 25 C 0.184 3.816 26 H 0.243 0.757 27 H 0.038 0.962 28 H 0.026 0.974 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.056 0.944 35 H 0.154 0.846 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.041 0.959 43 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -17.812 -5.706 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.265 4.265 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.008 3.992 11 C -0.107 4.107 12 H 0.120 0.880 13 C -0.144 4.144 14 C -0.157 4.157 15 C -0.020 4.020 16 N -0.317 5.317 17 C 0.284 3.716 18 O -0.470 6.470 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.166 4.166 23 C 0.035 3.965 24 H 0.064 0.936 25 C 0.057 3.943 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.059 0.941 43 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -8.713 -17.269 -5.243 20.040 hybrid contribution 0.700 1.888 0.384 2.050 sum -8.012 -15.381 -4.859 18.011 Atomic orbital electron populations 1.70261 1.06603 1.24801 1.58257 1.25811 0.96588 1.01583 1.02530 0.84922 0.78315 0.78901 0.76668 1.18307 1.21694 1.22127 1.19551 0.91164 0.83582 1.42906 0.89423 1.44553 1.02232 1.01534 1.86920 1.21559 0.94991 0.84197 0.98503 1.21869 0.92256 0.96774 0.99834 0.88046 1.21492 1.00148 0.98956 0.93767 1.21868 0.92050 0.96946 1.04798 1.21744 1.01239 0.92231 0.86817 1.46940 1.04662 1.48568 1.31507 1.21668 0.87747 0.79665 0.82490 1.90686 1.88027 1.38281 1.30044 1.23006 0.88949 1.03361 0.99620 1.22800 0.97090 0.98807 0.97493 1.22825 0.95258 1.03645 0.94185 1.22810 0.95066 1.01108 0.97648 1.20808 0.84825 0.94581 0.96295 0.93579 1.21289 0.84013 0.93066 0.95949 0.94773 0.94436 0.95625 0.88993 0.94065 0.89894 0.86906 0.86674 0.92558 0.82872 0.93488 0.87802 0.86385 0.91301 0.89259 0.92757 0.94101 1.00433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.65 10.18 21.65 0.22 -62.43 16 2 C -0.07 -4.45 5.48 84.86 0.47 -3.99 16 3 Si 0.98 48.67 29.55 68.60 2.03 50.70 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 7 C -0.24 -14.57 10.25 84.03 0.86 -13.71 16 8 H 0.09 4.94 7.83 -2.91 -0.02 4.91 16 9 N -0.63 -34.97 3.39 -696.06 -2.36 -37.33 16 10 C 0.13 5.68 6.83 86.66 0.59 6.28 16 11 C -0.09 -3.03 3.05 -10.54 -0.03 -3.06 16 12 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 13 C -0.11 -2.80 4.93 30.56 0.15 -2.65 16 14 C -0.12 -2.18 6.13 30.69 0.19 -1.99 16 15 C 0.10 2.27 5.65 86.62 0.49 2.76 16 16 N -0.59 -20.38 2.84 -804.36 -2.29 -22.66 16 17 C 0.49 18.48 6.92 87.66 0.61 19.09 16 18 O -0.59 -29.22 15.17 -3.02 -0.05 -29.27 16 19 C -0.13 -3.13 2.86 -11.01 -0.03 -3.17 16 20 C -0.12 -2.81 7.48 31.12 0.23 -2.58 16 21 C -0.12 -2.20 8.08 31.13 0.25 -1.95 16 22 C -0.13 -3.14 7.41 31.13 0.23 -2.91 16 23 C 0.14 6.07 2.64 45.87 0.12 6.19 16 24 H 0.05 2.24 7.50 -2.39 -0.02 2.22 16 25 C 0.18 10.28 5.00 86.67 0.43 10.71 16 26 H 0.24 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.04 1.53 7.70 -2.39 -0.02 1.51 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 31 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 1.67 5.86 -2.39 -0.01 1.65 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.15 2.34 6.71 -2.39 -0.02 2.33 16 36 H 0.05 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.79 7.43 -2.39 -0.02 1.77 16 42 H 0.04 2.76 6.24 -2.39 -0.01 2.74 16 43 H -0.02 -1.36 8.11 -2.39 -0.02 -1.38 16 Total: -1.00 -84.37 328.46 3.09 -81.28 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.70 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 4.56 Total: 9.02 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -4.42 Total: -122.43 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -84.37 3.09 -81.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049947041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.368 kcal (2) G-P(sol) polarization free energy of solvation -84.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds