Wall clock time and date at job start Tue Mar 31 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47280 * 270.00244 * 3 2 1 5 5 H 1.48506 * 109.46970 * 30.00150 * 3 2 1 6 6 H 1.48494 * 109.47128 * 149.99973 * 3 2 1 7 7 C 1.38814 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99767 * 195.67855 * 7 2 1 9 9 N 1.36937 * 120.00253 * 15.67002 * 7 2 1 10 10 C 1.47611 * 118.64112 * 26.52015 * 9 7 2 11 11 C 1.53946 * 112.13787 * 137.84788 * 10 9 7 12 12 C 1.50883 * 109.99583 * 319.49508 * 11 10 9 13 13 C 1.52434 * 109.42940 * 92.01492 * 12 11 10 14 14 H 1.08994 * 108.56107 * 36.06480 * 13 12 11 15 15 N 1.46501 * 108.44805 * 153.70574 * 13 12 11 16 16 C 1.34777 * 119.99446 * 209.59334 * 15 13 12 17 17 O 1.21609 * 120.00200 * 0.02562 * 16 15 13 18 18 C 1.47109 * 119.99759 * 180.02562 * 16 15 13 19 19 C 1.32991 * 120.00094 * 180.02562 * 18 16 15 20 20 C 1.51408 * 136.31565 * 359.62596 * 19 18 16 21 21 C 1.53366 * 87.51663 * 206.06036 * 20 19 18 22 22 C 1.51398 * 136.31707 * 180.02562 * 19 18 16 23 23 C 1.47090 * 114.22093 * 274.84380 * 13 12 11 24 24 C 1.44574 * 118.64836 * 206.49692 * 9 7 2 25 25 H 0.96993 * 119.99979 * 359.97438 * 1 2 3 26 26 H 1.09000 * 108.94763 * 17.15836 * 10 9 7 27 27 H 1.09003 * 108.87491 * 258.48399 * 10 9 7 28 28 H 1.08992 * 109.36683 * 79.62544 * 11 10 9 29 29 H 1.09004 * 109.36406 * 199.36918 * 11 10 9 30 30 H 1.08989 * 109.49465 * 211.79329 * 12 11 10 31 31 H 1.09007 * 109.48629 * 331.86719 * 12 11 10 32 32 H 0.96996 * 120.00500 * 29.60290 * 15 13 12 33 33 H 1.08002 * 119.99911 * 0.02562 * 18 16 15 34 34 H 1.09001 * 113.55882 * 320.64385 * 20 19 18 35 35 H 1.09003 * 113.56019 * 91.37339 * 20 19 18 36 36 H 1.09009 * 113.96890 * 220.29395 * 21 20 19 37 37 H 1.09003 * 113.60055 * 88.79865 * 21 20 19 38 38 H 1.09000 * 113.55995 * 268.62636 * 22 19 18 39 39 H 1.09003 * 113.56545 * 39.36286 * 22 19 18 40 40 H 1.09003 * 109.32986 * 302.53220 * 23 13 12 41 41 H 1.08995 * 109.18876 * 182.96496 * 23 13 12 42 42 H 1.09005 * 109.44796 * 30.79188 * 24 9 7 43 43 H 1.09004 * 109.45209 * 150.70574 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0601 -1.2197 0.2522 9 7 1.3638 -2.3659 -0.3214 10 6 0.1798 -2.2985 -1.2003 11 6 0.1724 -3.4236 -2.2510 12 6 1.5651 -3.6331 -2.7924 13 6 2.2720 -4.7060 -1.9721 14 1 1.5410 -5.4622 -1.6865 15 7 3.2890 -5.3393 -2.8153 16 6 3.6304 -6.6264 -2.6075 17 8 3.0939 -7.2622 -1.7204 18 6 4.6520 -7.2622 -3.4537 19 6 4.9885 -8.5325 -3.2490 20 6 4.5847 -9.6310 -2.2886 21 6 5.9728 -10.2442 -2.5110 22 6 5.9517 -9.5233 -3.8677 23 6 2.9234 -4.2022 -0.7533 24 6 1.8693 -3.6100 0.2143 25 1 -0.4850 0.8400 0.0004 26 1 0.1734 -1.3361 -1.7122 27 1 -0.7186 -2.3795 -0.5885 28 1 -0.1786 -4.3466 -1.7896 29 1 -0.4957 -3.1510 -3.0679 30 1 1.5066 -3.9549 -3.8321 31 1 2.1234 -2.6989 -2.7313 32 1 3.7167 -4.8323 -3.5230 33 1 5.1287 -6.6975 -4.2412 34 1 4.4231 -9.2808 -1.2691 35 1 3.7692 -10.2536 -2.6567 36 1 5.9692 -11.3314 -2.5897 37 1 6.7312 -9.8678 -1.8244 38 1 5.5115 -10.1163 -4.6694 39 1 6.9109 -9.0849 -4.1430 40 1 3.6419 -3.4278 -1.0220 41 1 3.4448 -5.0227 -0.2605 42 1 2.3301 -3.4266 1.1850 43 1 1.0468 -4.3157 0.3311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052296609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:58 Heat of formation + Delta-G solvation = 21.632284 kcal Electronic energy + Delta-G solvation = -21979.517692 eV Core-core repulsion = 18833.244580 eV Total energy + Delta-G solvation = -3146.273112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.94490 -38.71441 -37.38864 -34.69239 -32.47340 -31.62838 -31.03359 -29.58821 -26.08493 -25.95451 -24.29207 -23.59408 -22.74289 -20.59146 -20.08865 -19.21137 -18.18560 -16.86361 -16.66626 -15.93994 -15.67866 -15.09452 -14.80753 -14.42804 -14.07067 -13.85525 -13.49053 -13.30431 -12.77285 -12.66733 -12.48333 -12.13601 -11.92198 -11.89174 -11.35787 -11.21867 -11.19759 -10.82662 -10.73103 -10.61084 -10.38354 -10.21057 -10.04805 -9.84072 -9.72531 -9.58454 -9.41044 -9.30950 -8.67191 -8.36389 -6.62343 -5.74646 -3.18186 1.34139 3.38099 3.40740 3.45835 3.46939 3.48440 4.24854 4.32561 4.52622 4.55760 4.88272 5.08550 5.25886 5.30624 5.37876 5.40454 5.48571 5.50656 5.58694 5.67168 5.79652 5.83347 6.00306 6.07098 6.10003 6.11669 6.28248 6.39709 6.48167 6.53523 6.55623 6.72621 6.80667 6.88579 6.91073 6.98818 7.10689 7.47417 7.74291 7.83005 7.86067 8.50897 8.51121 9.28092 9.95192 10.40614 11.32711 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.003505 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.640610 B = 7986.154924 C = 8206.720775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.141 4.141 12 C -0.111 4.111 13 C 0.161 3.839 14 H 0.074 0.926 15 N -0.724 5.724 16 C 0.545 3.455 17 O -0.546 6.546 18 C -0.195 4.195 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.153 4.153 24 C 0.162 3.838 25 H 0.253 0.747 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.395 0.605 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -15.783 -9.562 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.150 4.150 13 C 0.058 3.942 14 H 0.092 0.908 15 N -0.374 5.374 16 C 0.333 3.667 17 O -0.426 6.426 18 C -0.216 4.216 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.180 4.180 22 C -0.145 4.145 23 C -0.195 4.195 24 C 0.034 3.966 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.229 0.771 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.597 -16.085 -8.897 20.292 hybrid contribution 0.747 1.290 -0.499 1.572 sum 9.344 -14.794 -9.396 19.861 Atomic orbital electron populations 1.70073 1.05182 1.25329 1.54317 1.25030 0.95260 0.98292 1.00913 0.86322 0.79135 0.83900 0.77601 1.21551 1.21834 1.20507 1.19224 0.92397 0.85033 1.41966 0.91746 1.43686 1.32426 1.01837 1.53271 1.21026 0.88614 0.95537 0.89564 1.21981 0.95176 1.00980 0.99863 1.21224 0.97639 0.99169 0.96926 1.19981 0.89212 0.94556 0.90410 0.90809 1.46393 1.42425 1.11879 1.36698 1.18395 0.82528 0.81870 0.83879 1.90755 1.54705 1.63628 1.33463 1.21704 1.01735 0.95399 1.02755 1.23414 0.94437 0.93437 0.95807 1.22195 0.96790 0.94733 1.00454 1.22727 0.98134 1.00150 0.97016 1.22334 0.98420 0.95975 0.97790 1.21862 1.00725 0.99807 0.97061 1.20570 0.93888 0.88222 0.93970 0.93729 0.90706 0.95734 0.93417 0.92582 0.93257 0.90136 0.77138 0.85266 0.89444 0.88600 0.90526 0.89773 0.88303 0.90546 0.92028 0.92996 0.93383 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 11.01 55.49 0.61 -25.45 16 2 C 0.00 0.09 4.87 -17.43 -0.08 0.01 16 3 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.26 -6.93 9.44 -15.06 -0.14 -7.07 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.55 2.27 -172.08 -0.39 -14.94 16 10 C 0.18 4.20 4.66 -2.94 -0.01 4.18 16 11 C -0.14 -2.64 5.72 -27.30 -0.16 -2.80 16 12 C -0.11 -1.92 4.98 -28.08 -0.14 -2.06 16 13 C 0.16 2.78 1.96 -71.06 -0.14 2.64 16 14 H 0.07 1.41 6.66 -51.93 -0.35 1.06 16 15 N -0.72 -10.49 4.87 -58.07 -0.28 -10.78 16 16 C 0.54 8.31 7.61 -12.66 -0.10 8.22 16 17 O -0.55 -10.21 14.64 5.27 0.08 -10.13 16 18 C -0.20 -2.28 10.03 -37.80 -0.38 -2.66 16 19 C -0.07 -0.75 6.93 -100.49 -0.70 -1.44 16 20 C -0.10 -1.11 6.99 -27.56 -0.19 -1.31 16 21 C -0.14 -1.12 8.17 -26.21 -0.21 -1.33 16 22 C -0.11 -0.82 7.95 -27.42 -0.22 -1.04 16 23 C -0.15 -2.91 5.19 -28.58 -0.15 -3.06 16 24 C 0.16 3.52 5.65 -4.09 -0.02 3.50 16 25 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.07 1.95 6.33 -51.93 -0.33 1.63 16 27 H 0.02 0.63 8.03 -51.93 -0.42 0.22 16 28 H 0.05 0.88 7.32 -51.93 -0.38 0.50 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.73 8.04 -51.94 -0.42 0.32 16 31 H 0.08 1.55 7.47 -51.93 -0.39 1.17 16 32 H 0.40 4.64 8.59 -40.82 -0.35 4.29 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.09 1.12 7.49 -51.93 -0.39 0.73 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 42 H 0.05 1.06 7.99 -51.93 -0.41 0.65 16 43 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -30.85 339.01 -9.74 -40.59 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.19 Total: 3.23 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.64 Total: -4.21 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.06 Total: -51.17 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.85 -9.74 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052296609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.225 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds