Wall clock time and date at job start Tue Mar 31 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47280 * 270.00244 * 3 2 1 5 5 H 1.48506 * 109.46970 * 30.00150 * 3 2 1 6 6 H 1.48494 * 109.47128 * 149.99973 * 3 2 1 7 7 C 1.38814 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99767 * 195.67855 * 7 2 1 9 9 N 1.36937 * 120.00253 * 15.67002 * 7 2 1 10 10 C 1.47611 * 118.64112 * 26.52015 * 9 7 2 11 11 C 1.53946 * 112.13787 * 137.84788 * 10 9 7 12 12 C 1.50883 * 109.99583 * 319.49508 * 11 10 9 13 13 C 1.52434 * 109.42940 * 92.01492 * 12 11 10 14 14 H 1.08994 * 108.56107 * 36.06480 * 13 12 11 15 15 N 1.46501 * 108.44805 * 153.70574 * 13 12 11 16 16 C 1.34777 * 119.99446 * 209.59334 * 15 13 12 17 17 O 1.21609 * 120.00200 * 0.02562 * 16 15 13 18 18 C 1.47109 * 119.99759 * 180.02562 * 16 15 13 19 19 C 1.32991 * 120.00094 * 180.02562 * 18 16 15 20 20 C 1.51408 * 136.31565 * 359.62596 * 19 18 16 21 21 C 1.53366 * 87.51663 * 206.06036 * 20 19 18 22 22 C 1.51398 * 136.31707 * 180.02562 * 19 18 16 23 23 C 1.47090 * 114.22093 * 274.84380 * 13 12 11 24 24 C 1.44574 * 118.64836 * 206.49692 * 9 7 2 25 25 H 0.96993 * 119.99979 * 359.97438 * 1 2 3 26 26 H 1.09000 * 108.94763 * 17.15836 * 10 9 7 27 27 H 1.09003 * 108.87491 * 258.48399 * 10 9 7 28 28 H 1.08992 * 109.36683 * 79.62544 * 11 10 9 29 29 H 1.09004 * 109.36406 * 199.36918 * 11 10 9 30 30 H 1.08989 * 109.49465 * 211.79329 * 12 11 10 31 31 H 1.09007 * 109.48629 * 331.86719 * 12 11 10 32 32 H 0.96996 * 120.00500 * 29.60290 * 15 13 12 33 33 H 1.08002 * 119.99911 * 0.02562 * 18 16 15 34 34 H 1.09001 * 113.55882 * 320.64385 * 20 19 18 35 35 H 1.09003 * 113.56019 * 91.37339 * 20 19 18 36 36 H 1.09009 * 113.96890 * 220.29395 * 21 20 19 37 37 H 1.09003 * 113.60055 * 88.79865 * 21 20 19 38 38 H 1.09000 * 113.55995 * 268.62636 * 22 19 18 39 39 H 1.09003 * 113.56545 * 39.36286 * 22 19 18 40 40 H 1.09003 * 109.32986 * 302.53220 * 23 13 12 41 41 H 1.08995 * 109.18876 * 182.96496 * 23 13 12 42 42 H 1.09005 * 109.44796 * 30.79188 * 24 9 7 43 43 H 1.09004 * 109.45209 * 150.70574 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0601 -1.2197 0.2522 9 7 1.3638 -2.3659 -0.3214 10 6 0.1798 -2.2985 -1.2003 11 6 0.1724 -3.4236 -2.2510 12 6 1.5651 -3.6331 -2.7924 13 6 2.2720 -4.7060 -1.9721 14 1 1.5410 -5.4622 -1.6865 15 7 3.2890 -5.3393 -2.8153 16 6 3.6304 -6.6264 -2.6075 17 8 3.0939 -7.2622 -1.7204 18 6 4.6520 -7.2622 -3.4537 19 6 4.9885 -8.5325 -3.2490 20 6 4.5847 -9.6310 -2.2886 21 6 5.9728 -10.2442 -2.5110 22 6 5.9517 -9.5233 -3.8677 23 6 2.9234 -4.2022 -0.7533 24 6 1.8693 -3.6100 0.2143 25 1 -0.4850 0.8400 0.0004 26 1 0.1734 -1.3361 -1.7122 27 1 -0.7186 -2.3795 -0.5885 28 1 -0.1786 -4.3466 -1.7896 29 1 -0.4957 -3.1510 -3.0679 30 1 1.5066 -3.9549 -3.8321 31 1 2.1234 -2.6989 -2.7313 32 1 3.7167 -4.8323 -3.5230 33 1 5.1287 -6.6975 -4.2412 34 1 4.4231 -9.2808 -1.2691 35 1 3.7692 -10.2536 -2.6567 36 1 5.9692 -11.3314 -2.5897 37 1 6.7312 -9.8678 -1.8244 38 1 5.5115 -10.1163 -4.6694 39 1 6.9109 -9.0849 -4.1430 40 1 3.6419 -3.4278 -1.0220 41 1 3.4448 -5.0227 -0.2605 42 1 2.3301 -3.4266 1.1850 43 1 1.0468 -4.3157 0.3311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052296609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:57 Heat of formation + Delta-G solvation = 3.720032 kcal Electronic energy + Delta-G solvation = -21980.294426 eV Core-core repulsion = 18833.244580 eV Total energy + Delta-G solvation = -3147.049845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15868 -39.72997 -38.78436 -36.32625 -34.10669 -33.34085 -32.34978 -30.98981 -27.90245 -26.65944 -25.83837 -25.26056 -23.89721 -21.74863 -21.54589 -20.98235 -19.14921 -18.56318 -17.95345 -17.20332 -16.97172 -16.40231 -15.88728 -15.83891 -15.65913 -15.32881 -15.02418 -14.97473 -14.30908 -14.13362 -13.61385 -13.32203 -13.20084 -13.03114 -12.88477 -12.71996 -12.62394 -12.41189 -12.12127 -12.03671 -11.88852 -11.75548 -11.54726 -11.52235 -11.39666 -11.35522 -10.62128 -10.43734 -10.25926 -9.88975 -8.65588 -7.84081 -5.30894 0.42600 1.47825 1.48585 1.57594 2.27139 2.38507 2.52910 3.29157 3.44116 3.61134 3.65874 3.77926 3.85659 4.11071 4.22329 4.28519 4.33141 4.44159 4.44336 4.63529 4.67899 4.75950 4.77063 4.86516 4.94721 4.96576 4.99997 5.05414 5.11223 5.14192 5.23284 5.28874 5.33425 5.37558 5.49104 5.58109 5.62043 5.68771 5.70915 5.81892 6.42140 6.71099 7.19833 7.36722 7.94975 8.35056 9.21234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.003505 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.640610 B = 7986.154924 C = 8206.720775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.602 5.602 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.100 4.100 13 C 0.169 3.831 14 H 0.057 0.943 15 N -0.715 5.715 16 C 0.539 3.461 17 O -0.589 6.589 18 C -0.209 4.209 19 C -0.073 4.073 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.133 4.133 24 C 0.160 3.840 25 H 0.249 0.751 26 H 0.047 0.953 27 H -0.009 1.009 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.162 0.838 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -16.953 -11.830 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.324 5.324 10 C 0.062 3.938 11 C -0.169 4.169 12 C -0.139 4.139 13 C 0.065 3.935 14 H 0.076 0.924 15 N -0.365 5.365 16 C 0.329 3.671 17 O -0.472 6.472 18 C -0.230 4.230 19 C -0.075 4.075 20 C -0.157 4.157 21 C -0.171 4.171 22 C -0.130 4.130 23 C -0.175 4.175 24 C 0.032 3.968 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.693 -17.268 -11.194 23.191 hybrid contribution 0.084 1.555 0.300 1.586 sum 10.777 -15.713 -10.894 21.948 Atomic orbital electron populations 1.70236 1.06565 1.25688 1.55703 1.25757 0.96004 1.01318 1.01199 0.85303 0.77992 0.79739 0.77621 1.20930 1.22391 1.19625 1.19487 0.92518 0.86069 1.41322 0.91854 1.43860 1.32484 1.02129 1.53917 1.20817 0.86976 0.96168 0.89813 1.21839 0.97038 0.99023 0.98993 1.21100 0.95966 0.98163 0.98622 1.19659 0.89493 0.94133 0.90262 0.92436 1.46172 1.41809 1.11924 1.36601 1.19057 0.82674 0.81679 0.83649 1.90740 1.56400 1.64542 1.35474 1.21727 1.01676 0.96055 1.03531 1.23924 0.94418 0.93498 0.95634 1.22333 0.98941 0.95648 0.98814 1.22719 0.95784 1.01411 0.97222 1.22371 0.98250 0.94516 0.97827 1.21598 0.99484 0.99145 0.97229 1.20646 0.94516 0.87376 0.94274 0.94191 0.93486 0.99059 0.92987 0.90360 0.89886 0.91992 0.75192 0.82089 0.92602 0.88158 0.88497 0.89899 0.86259 0.88789 0.92654 0.93211 0.94445 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.39 11.01 21.65 0.24 -55.15 16 2 C -0.05 -2.65 4.87 84.86 0.41 -2.23 16 3 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.26 -14.47 9.44 84.03 0.79 -13.67 16 8 H 0.06 3.43 7.88 -2.91 -0.02 3.41 16 9 N -0.60 -30.29 2.27 -698.35 -1.58 -31.87 16 10 C 0.19 9.07 4.66 86.49 0.40 9.47 16 11 C -0.13 -4.78 5.72 30.23 0.17 -4.61 16 12 C -0.10 -3.29 4.98 29.72 0.15 -3.14 16 13 C 0.17 5.67 1.96 42.97 0.08 5.76 16 14 H 0.06 2.17 6.66 -2.39 -0.02 2.16 16 15 N -0.71 -19.49 4.87 -455.90 -2.22 -21.71 16 16 C 0.54 15.86 7.61 86.57 0.66 16.52 16 17 O -0.59 -22.19 14.64 -4.06 -0.06 -22.25 16 18 C -0.21 -4.43 10.03 23.43 0.23 -4.20 16 19 C -0.07 -1.42 6.93 -17.17 -0.12 -1.54 16 20 C -0.12 -2.45 6.99 30.05 0.21 -2.24 16 21 C -0.13 -1.75 8.17 30.93 0.25 -1.49 16 22 C -0.09 -1.06 7.95 30.15 0.24 -0.82 16 23 C -0.13 -5.06 5.19 29.39 0.15 -4.91 16 24 C 0.16 7.07 5.65 87.38 0.49 7.57 16 25 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.05 2.52 6.33 -2.39 -0.02 2.51 16 27 H -0.01 -0.47 8.03 -2.39 -0.02 -0.49 16 28 H 0.05 1.88 7.32 -2.39 -0.02 1.86 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 31 H 0.06 2.31 7.47 -2.38 -0.02 2.29 16 32 H 0.41 8.57 8.59 -92.71 -0.80 7.77 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.06 1.48 7.49 -2.39 -0.02 1.46 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 42 H 0.04 1.70 7.99 -2.38 -0.02 1.68 16 43 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 Total: -1.00 -68.93 339.01 2.73 -66.20 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.19 Total: 17.43 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.14 Total: 0.47 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.57 Total: -108.73 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.06 Total: -22.25 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.93 2.73 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052296609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.920 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds