Wall clock time and date at job start Tue Mar 31 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48493 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46936 * 299.99986 * 3 2 1 6 6 H 1.48503 * 109.47058 * 59.99981 * 3 2 1 7 7 C 1.38809 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00196 * 160.40751 * 7 2 1 9 9 N 1.36939 * 120.00291 * 340.40844 * 7 2 1 10 10 C 1.50169 * 120.53443 * 336.71732 * 9 7 2 11 11 C 1.46243 * 107.52951 * 109.61185 * 10 9 7 12 12 C 1.52526 * 114.27981 * 58.40262 * 11 10 9 13 13 C 1.50123 * 105.42059 * 270.59834 * 12 11 10 14 14 H 1.09001 * 109.20462 * 337.33737 * 13 12 11 15 15 N 1.46501 * 109.20924 * 217.98148 * 13 12 11 16 16 C 1.34771 * 120.00114 * 154.35418 * 15 13 12 17 17 O 1.21618 * 120.00247 * 0.02562 * 16 15 13 18 18 C 1.47101 * 120.00177 * 179.97438 * 16 15 13 19 19 C 1.32990 * 120.00263 * 180.02562 * 18 16 15 20 20 C 1.51403 * 136.31670 * 359.63473 * 19 18 16 21 21 C 1.53376 * 87.52066 * 206.05561 * 20 19 18 22 22 C 1.51403 * 136.31921 * 180.02562 * 19 18 16 23 23 C 1.54839 * 110.81932 * 97.67988 * 13 12 11 24 24 C 1.43431 * 120.53867 * 156.74005 * 9 7 2 25 25 H 0.97001 * 119.99987 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.84519 * 350.10497 * 10 9 7 27 27 H 1.08993 * 109.84279 * 229.11527 * 10 9 7 28 28 H 1.09001 * 108.52258 * 297.16364 * 11 10 9 29 29 H 1.09001 * 108.39707 * 179.55694 * 11 10 9 30 30 H 1.09001 * 110.24850 * 151.61557 * 12 11 10 31 31 H 1.09005 * 110.36423 * 29.63397 * 12 11 10 32 32 H 0.97003 * 119.99923 * 334.36261 * 15 13 12 33 33 H 1.08000 * 119.99943 * 0.02562 * 18 16 15 34 34 H 1.09003 * 113.56089 * 320.63852 * 20 19 18 35 35 H 1.08999 * 113.56450 * 91.36986 * 20 19 18 36 36 H 1.08993 * 113.96769 * 220.28977 * 21 20 19 37 37 H 1.09005 * 113.70934 * 88.80761 * 21 20 19 38 38 H 1.08997 * 113.56020 * 268.63057 * 22 19 18 39 39 H 1.09001 * 113.56312 * 39.35688 * 22 19 18 40 40 H 1.08998 * 109.35859 * 81.33549 * 23 13 12 41 41 H 1.08992 * 109.36233 * 200.92953 * 23 13 12 42 42 H 1.08999 * 108.15906 * 33.26736 * 24 9 7 43 43 H 1.09001 * 108.15632 * 149.82843 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0433 -1.2294 -0.3131 9 7 1.3850 -2.3536 0.3987 10 6 0.1859 -2.2978 1.3011 11 6 -0.9805 -2.6843 0.5081 12 6 -0.8820 -4.0721 -0.1170 13 6 -0.2313 -3.8627 -1.4535 14 1 -0.3828 -2.8301 -1.7682 15 7 -0.8457 -4.7605 -2.4347 16 6 -0.8335 -4.4383 -3.7433 17 8 -0.3120 -3.4025 -4.1098 18 6 -1.4499 -5.3400 -4.7286 19 6 -1.4373 -5.0224 -6.0200 20 6 -0.9212 -3.8733 -6.8599 21 6 -2.0055 -4.2241 -7.8864 22 6 -1.9391 -5.6450 -7.3056 23 6 1.2874 -4.1547 -1.3780 24 6 1.8650 -3.6323 -0.0390 25 1 -0.4850 0.8401 -0.0004 26 1 0.0557 -1.2847 1.6813 27 1 0.3153 -2.9919 2.1315 28 1 -1.1142 -1.9539 -0.2898 29 1 -1.8592 -2.6563 1.1525 30 1 -1.8765 -4.4999 -0.2443 31 1 -0.2679 -4.7249 0.5035 32 1 -1.2614 -5.5867 -2.1425 33 1 -1.9126 -6.2601 -4.4033 34 1 -1.0620 -2.8970 -6.3961 35 1 0.0933 -4.0245 -7.2288 36 1 -1.6733 -4.1556 -8.9223 37 1 -2.9558 -3.7203 -7.7097 38 1 -1.2040 -6.2826 -7.7968 39 1 -2.9145 -6.1215 -7.2074 40 1 1.4525 -5.2298 -1.4477 41 1 1.7923 -3.6591 -2.2071 42 1 2.9490 -3.5730 -0.1368 43 1 1.6390 -4.3638 0.7369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052296610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:01 Heat of formation + Delta-G solvation = 30.165167 kcal Electronic energy + Delta-G solvation = -22363.572335 eV Core-core repulsion = 19217.669237 eV Total energy + Delta-G solvation = -3145.903098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.67334 -38.53648 -37.35346 -34.47389 -32.24360 -31.52145 -30.90566 -29.48305 -26.11688 -25.82541 -24.15951 -23.57857 -22.44365 -20.51894 -19.92548 -19.06552 -17.98567 -16.73578 -16.53779 -15.72790 -15.50855 -14.99051 -14.58783 -14.39428 -13.91922 -13.68963 -13.58625 -13.12452 -12.54038 -12.44033 -12.18048 -12.01274 -11.76401 -11.74450 -11.40226 -11.20571 -11.06379 -10.74954 -10.59011 -10.47491 -10.27327 -10.13762 -9.96621 -9.70878 -9.44258 -9.28672 -9.20878 -9.14932 -8.46645 -8.26067 -6.64184 -5.71636 -3.10063 1.50469 3.43875 3.52268 3.54380 3.61033 3.70020 4.38874 4.46385 4.58761 4.69850 5.00115 5.25287 5.40657 5.41615 5.45603 5.53653 5.59938 5.63955 5.70761 5.78917 5.95535 6.01010 6.08714 6.14371 6.26792 6.33432 6.38109 6.47804 6.54981 6.64016 6.77701 6.94433 6.98058 7.01720 7.11399 7.24358 7.29651 7.64640 7.82282 8.03234 8.05677 8.50368 8.76154 9.26830 9.94324 10.46630 11.36289 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.004645 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.469351 B = 6027.034308 C = 6828.429391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.165 3.835 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.156 3.844 14 H 0.102 0.898 15 N -0.726 5.726 16 C 0.540 3.460 17 O -0.534 6.534 18 C -0.194 4.194 19 C -0.071 4.071 20 C -0.106 4.106 21 C -0.143 4.143 22 C -0.107 4.107 23 C -0.150 4.150 24 C 0.162 3.838 25 H 0.251 0.749 26 H 0.090 0.910 27 H 0.006 0.994 28 H 0.103 0.897 29 H 0.029 0.971 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.390 0.610 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -13.241 -8.565 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.042 3.958 11 C -0.168 4.168 12 C -0.159 4.159 13 C 0.053 3.947 14 H 0.120 0.880 15 N -0.376 5.376 16 C 0.328 3.672 17 O -0.412 6.412 18 C -0.215 4.215 19 C -0.073 4.073 20 C -0.142 4.142 21 C -0.180 4.180 22 C -0.144 4.144 23 C -0.192 4.192 24 C 0.032 3.968 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.024 0.976 28 H 0.121 0.879 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.223 0.777 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.343 -12.305 -8.785 16.035 hybrid contribution 0.051 0.288 0.013 0.293 sum -5.292 -12.017 -8.772 15.791 Atomic orbital electron populations 1.69969 1.05083 1.25040 1.54427 1.24874 0.95215 0.98177 1.01217 0.86269 0.79428 0.84281 0.77102 1.20426 1.21899 1.21731 1.19247 0.93672 0.85310 1.39465 0.91474 1.44281 1.33698 1.00901 1.52104 1.20166 0.85276 1.00513 0.89877 1.20934 0.98417 0.95084 1.02394 1.21357 0.98699 0.99657 0.96164 1.21234 0.91999 0.94968 0.86510 0.88031 1.46409 1.59288 1.24992 1.06885 1.18407 0.80019 0.86051 0.82763 1.90821 1.45125 1.25488 1.79749 1.21728 1.06445 1.00976 0.92302 1.23396 0.93653 0.97152 0.93112 1.22192 0.98637 0.98797 0.94603 1.22719 1.00012 0.96246 0.99024 1.22320 1.01465 0.97382 0.93242 1.23291 0.95487 0.98416 1.02037 1.20351 0.96332 0.88182 0.91928 0.93863 0.89155 0.97614 0.87915 0.95260 0.92910 0.91974 0.77709 0.85469 0.89348 0.88604 0.90604 0.89825 0.88398 0.90674 0.93788 0.92598 0.94913 0.95387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 9.43 55.49 0.52 -25.02 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 22.19 29.60 -169.99 -5.03 17.16 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -6.87 9.63 -15.06 -0.14 -7.01 16 8 H 0.07 1.87 7.89 -52.48 -0.41 1.46 16 9 N -0.59 -14.68 2.60 -175.08 -0.46 -15.13 16 10 C 0.17 3.86 5.25 -5.20 -0.03 3.83 16 11 C -0.13 -2.78 5.02 -30.19 -0.15 -2.93 16 12 C -0.12 -2.18 5.33 -28.40 -0.15 -2.33 16 13 C 0.16 3.08 2.23 -68.39 -0.15 2.93 16 14 H 0.10 2.59 6.25 -51.93 -0.32 2.26 16 15 N -0.73 -11.82 4.96 -55.44 -0.27 -12.10 16 16 C 0.54 9.56 7.72 -12.67 -0.10 9.46 16 17 O -0.53 -11.95 14.81 5.26 0.08 -11.87 16 18 C -0.19 -2.59 10.03 -37.81 -0.38 -2.97 16 19 C -0.07 -0.90 6.93 -100.49 -0.70 -1.59 16 20 C -0.11 -1.35 6.99 -27.56 -0.19 -1.54 16 21 C -0.14 -1.34 8.17 -26.21 -0.21 -1.56 16 22 C -0.11 -0.96 7.95 -27.42 -0.22 -1.17 16 23 C -0.15 -3.03 5.99 -24.76 -0.15 -3.18 16 24 C 0.16 3.48 5.17 -4.66 -0.02 3.45 16 25 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 27 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 28 H 0.10 2.63 5.30 -51.93 -0.27 2.35 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 31 H 0.06 1.07 6.30 -51.93 -0.33 0.74 16 32 H 0.39 4.88 8.47 -40.82 -0.35 4.54 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.09 1.37 7.49 -51.93 -0.39 0.98 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.03 0.71 7.99 -51.93 -0.41 0.29 16 43 H 0.03 0.54 6.89 -51.93 -0.36 0.19 16 LS Contribution 334.11 15.07 5.03 5.03 Total: -1.00 -31.32 334.11 -9.74 -41.06 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.93 Total: 5.48 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.68 Total: -4.61 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.21 Total: -52.26 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.32 -9.74 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052296610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.228 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds