Wall clock time and date at job start Tue Mar 31 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48493 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46936 * 299.99986 * 3 2 1 6 6 H 1.48503 * 109.47058 * 59.99981 * 3 2 1 7 7 C 1.38809 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00196 * 160.40751 * 7 2 1 9 9 N 1.36939 * 120.00291 * 340.40844 * 7 2 1 10 10 C 1.50169 * 120.53443 * 336.71732 * 9 7 2 11 11 C 1.46243 * 107.52951 * 109.61185 * 10 9 7 12 12 C 1.52526 * 114.27981 * 58.40262 * 11 10 9 13 13 C 1.50123 * 105.42059 * 270.59834 * 12 11 10 14 14 H 1.09001 * 109.20462 * 337.33737 * 13 12 11 15 15 N 1.46501 * 109.20924 * 217.98148 * 13 12 11 16 16 C 1.34771 * 120.00114 * 154.35418 * 15 13 12 17 17 O 1.21618 * 120.00247 * 0.02562 * 16 15 13 18 18 C 1.47101 * 120.00177 * 179.97438 * 16 15 13 19 19 C 1.32990 * 120.00263 * 180.02562 * 18 16 15 20 20 C 1.51403 * 136.31670 * 359.63473 * 19 18 16 21 21 C 1.53376 * 87.52066 * 206.05561 * 20 19 18 22 22 C 1.51403 * 136.31921 * 180.02562 * 19 18 16 23 23 C 1.54839 * 110.81932 * 97.67988 * 13 12 11 24 24 C 1.43431 * 120.53867 * 156.74005 * 9 7 2 25 25 H 0.97001 * 119.99987 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.84519 * 350.10497 * 10 9 7 27 27 H 1.08993 * 109.84279 * 229.11527 * 10 9 7 28 28 H 1.09001 * 108.52258 * 297.16364 * 11 10 9 29 29 H 1.09001 * 108.39707 * 179.55694 * 11 10 9 30 30 H 1.09001 * 110.24850 * 151.61557 * 12 11 10 31 31 H 1.09005 * 110.36423 * 29.63397 * 12 11 10 32 32 H 0.97003 * 119.99923 * 334.36261 * 15 13 12 33 33 H 1.08000 * 119.99943 * 0.02562 * 18 16 15 34 34 H 1.09003 * 113.56089 * 320.63852 * 20 19 18 35 35 H 1.08999 * 113.56450 * 91.36986 * 20 19 18 36 36 H 1.08993 * 113.96769 * 220.28977 * 21 20 19 37 37 H 1.09005 * 113.70934 * 88.80761 * 21 20 19 38 38 H 1.08997 * 113.56020 * 268.63057 * 22 19 18 39 39 H 1.09001 * 113.56312 * 39.35688 * 22 19 18 40 40 H 1.08998 * 109.35859 * 81.33549 * 23 13 12 41 41 H 1.08992 * 109.36233 * 200.92953 * 23 13 12 42 42 H 1.08999 * 108.15906 * 33.26736 * 24 9 7 43 43 H 1.09001 * 108.15632 * 149.82843 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0433 -1.2294 -0.3131 9 7 1.3850 -2.3536 0.3987 10 6 0.1859 -2.2978 1.3011 11 6 -0.9805 -2.6843 0.5081 12 6 -0.8820 -4.0721 -0.1170 13 6 -0.2313 -3.8627 -1.4535 14 1 -0.3828 -2.8301 -1.7682 15 7 -0.8457 -4.7605 -2.4347 16 6 -0.8335 -4.4383 -3.7433 17 8 -0.3120 -3.4025 -4.1098 18 6 -1.4499 -5.3400 -4.7286 19 6 -1.4373 -5.0224 -6.0200 20 6 -0.9212 -3.8733 -6.8599 21 6 -2.0055 -4.2241 -7.8864 22 6 -1.9391 -5.6450 -7.3056 23 6 1.2874 -4.1547 -1.3780 24 6 1.8650 -3.6323 -0.0390 25 1 -0.4850 0.8401 -0.0004 26 1 0.0557 -1.2847 1.6813 27 1 0.3153 -2.9919 2.1315 28 1 -1.1142 -1.9539 -0.2898 29 1 -1.8592 -2.6563 1.1525 30 1 -1.8765 -4.4999 -0.2443 31 1 -0.2679 -4.7249 0.5035 32 1 -1.2614 -5.5867 -2.1425 33 1 -1.9126 -6.2601 -4.4033 34 1 -1.0620 -2.8970 -6.3961 35 1 0.0933 -4.0245 -7.2288 36 1 -1.6733 -4.1556 -8.9223 37 1 -2.9558 -3.7203 -7.7097 38 1 -1.2040 -6.2826 -7.7968 39 1 -2.9145 -6.1215 -7.2074 40 1 1.4525 -5.2298 -1.4477 41 1 1.7923 -3.6591 -2.2071 42 1 2.9490 -3.5730 -0.1368 43 1 1.6390 -4.3638 0.7369 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052296610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:01 Heat of formation + Delta-G solvation = 10.583430 kcal Electronic energy + Delta-G solvation = -22364.421463 eV Core-core repulsion = 19217.669237 eV Total energy + Delta-G solvation = -3146.752226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04255 -39.73795 -38.84692 -36.19009 -34.02193 -33.32334 -32.30143 -30.98649 -27.97072 -26.68166 -25.78478 -25.20256 -23.76413 -22.03265 -21.43193 -20.78093 -19.10424 -18.60478 -17.86431 -17.10157 -16.92332 -16.41793 -16.11171 -15.78090 -15.57202 -15.32494 -15.06292 -14.91848 -14.09257 -13.92081 -13.49167 -13.34940 -13.24209 -13.14300 -12.92652 -12.73052 -12.65273 -12.33674 -12.11585 -11.94343 -11.89818 -11.75531 -11.58660 -11.40081 -11.21237 -11.12412 -10.59837 -10.45971 -10.23630 -9.79399 -8.64671 -7.83950 -5.23903 0.42349 1.42763 1.45466 1.54866 2.33316 2.39732 2.53053 3.29116 3.44200 3.59469 3.62454 3.83271 4.04326 4.09598 4.22927 4.27537 4.35264 4.49827 4.61115 4.63502 4.73443 4.75372 4.84309 4.87869 4.89330 4.94745 5.02884 5.07786 5.17777 5.23819 5.29448 5.33437 5.35025 5.44739 5.51139 5.66031 5.69404 5.73184 5.80729 6.19773 6.42119 6.76565 7.18721 7.45188 7.92479 8.40021 9.20483 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.004645 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.469351 B = 6027.034308 C = 6828.429391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.285 1.285 7 C -0.262 4.262 8 H 0.057 0.943 9 N -0.603 5.603 10 C 0.167 3.833 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.168 3.832 14 H 0.036 0.964 15 N -0.711 5.711 16 C 0.529 3.471 17 O -0.596 6.596 18 C -0.204 4.204 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.086 4.086 23 C -0.139 4.139 24 C 0.156 3.844 25 H 0.245 0.755 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.414 0.586 33 H 0.171 0.829 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.013 0.987 42 H 0.026 0.974 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -16.644 -8.914 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.240 4.240 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.044 3.956 11 C -0.163 4.163 12 C -0.143 4.143 13 C 0.064 3.936 14 H 0.054 0.946 15 N -0.362 5.362 16 C 0.319 3.681 17 O -0.478 6.478 18 C -0.224 4.224 19 C -0.078 4.078 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.123 4.123 23 C -0.181 4.181 24 C 0.028 3.972 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.251 0.749 33 H 0.188 0.812 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.405 -15.772 -9.111 19.308 hybrid contribution 0.411 1.379 0.074 1.441 sum -5.994 -14.393 -9.037 18.021 Atomic orbital electron populations 1.70152 1.05939 1.24974 1.55183 1.25525 0.96023 1.00741 1.01692 0.85394 0.78696 0.80887 0.76587 1.19653 1.22821 1.21158 1.19425 0.93555 0.86915 1.39311 0.92479 1.44458 1.34111 1.01280 1.52658 1.20128 0.85500 0.99347 0.90614 1.20749 0.98310 0.96189 1.01016 1.21261 1.00761 0.97817 0.94471 1.20754 0.92281 0.92402 0.88197 0.94577 1.46154 1.58729 1.25265 1.06062 1.19282 0.79212 0.85855 0.83702 1.90805 1.47932 1.28378 1.80695 1.21763 1.07570 1.01710 0.91394 1.23948 0.92368 0.97224 0.94278 1.22354 1.00242 0.97207 0.96572 1.22712 0.98406 0.96628 0.99204 1.22332 1.03011 0.97008 0.89906 1.23161 0.95343 0.99948 0.99680 1.20494 0.95941 0.87508 0.93305 0.94529 0.92625 0.94737 0.92541 0.93555 0.89670 0.89701 0.74850 0.81217 0.93527 0.88499 0.88421 0.89876 0.86143 0.88251 0.90148 0.96764 0.95582 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 9.43 21.65 0.20 -54.33 16 2 C -0.04 -2.54 4.91 84.86 0.42 -2.12 16 3 Si 0.95 47.26 29.60 68.60 2.03 49.29 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.26 -15.05 9.63 84.03 0.81 -14.24 16 8 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 9 N -0.60 -30.54 2.60 -707.84 -1.84 -32.39 16 10 C 0.17 7.82 5.25 83.58 0.44 8.26 16 11 C -0.12 -5.30 5.02 28.36 0.14 -5.15 16 12 C -0.11 -3.56 5.33 29.51 0.16 -3.40 16 13 C 0.17 6.67 2.23 44.69 0.10 6.77 16 14 H 0.04 1.95 6.25 -2.39 -0.01 1.94 16 15 N -0.71 -22.35 4.96 -447.56 -2.22 -24.57 16 16 C 0.53 18.94 7.72 86.57 0.67 19.61 16 17 O -0.60 -28.54 14.81 -4.09 -0.06 -28.60 16 18 C -0.20 -5.08 10.03 23.43 0.23 -4.85 16 19 C -0.08 -1.80 6.93 -17.17 -0.12 -1.92 16 20 C -0.13 -3.31 6.99 30.06 0.21 -3.10 16 21 C -0.13 -2.22 8.17 30.93 0.25 -1.97 16 22 C -0.09 -1.21 7.95 30.15 0.24 -0.97 16 23 C -0.14 -5.61 5.99 31.87 0.19 -5.42 16 24 C 0.16 6.60 5.17 87.60 0.45 7.06 16 25 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.06 2.98 6.05 -2.39 -0.01 2.97 16 27 H 0.03 1.41 8.12 -2.39 -0.02 1.39 16 28 H 0.06 3.01 5.30 -2.39 -0.01 3.00 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.34 7.86 -2.39 -0.02 2.33 16 31 H 0.08 2.54 6.30 -2.38 -0.02 2.53 16 32 H 0.41 8.97 8.47 -92.71 -0.79 8.18 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.05 1.58 7.49 -2.39 -0.02 1.57 16 35 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 43 H 0.06 2.19 6.89 -2.39 -0.02 2.17 16 Total: -1.00 -75.47 334.11 2.52 -72.95 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.21 Total: 19.09 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.19 Total: -1.44 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -3.86 Total: -111.29 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.06 Total: -28.60 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.47 2.52 -72.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052296610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.534 kcal (2) G-P(sol) polarization free energy of solvation -75.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds