Wall clock time and date at job start Mon Mar 30 2020 23:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48496 * 109.46904 * 269.99539 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99822 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 160.13234 * 7 2 1 9 9 N 1.36933 * 120.00031 * 340.41436 * 7 2 1 10 10 C 1.50170 * 120.53573 * 336.76561 * 9 7 2 11 11 C 1.46242 * 107.53356 * 109.56692 * 10 9 7 12 12 C 1.52519 * 114.27692 * 58.40698 * 11 10 9 13 13 C 1.50120 * 105.41545 * 270.59397 * 12 11 10 14 14 H 1.08997 * 109.21162 * 337.33965 * 13 12 11 15 15 N 1.46503 * 109.20942 * 217.98579 * 13 12 11 16 16 C 1.34771 * 119.99922 * 155.00313 * 15 13 12 17 17 O 1.21612 * 120.00330 * 359.97438 * 16 15 13 18 18 C 1.47111 * 119.99843 * 179.97438 * 16 15 13 19 19 C 1.32611 * 124.62177 * 179.69519 * 18 16 15 20 20 C 1.51109 * 110.76011 * 179.84121 * 19 18 16 21 21 C 1.54575 * 104.90156 * 343.80833 * 20 19 18 22 22 C 1.51112 * 124.61657 * 359.97438 * 18 16 15 23 23 C 1.54844 * 110.81897 * 97.68509 * 13 12 11 24 24 C 1.43426 * 120.53767 * 156.48703 * 9 7 2 25 25 H 0.96994 * 119.99966 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.84452 * 229.07447 * 10 9 7 27 27 H 1.09000 * 109.84581 * 350.05934 * 10 9 7 28 28 H 1.08997 * 108.51728 * 179.64998 * 11 10 9 29 29 H 1.08999 * 108.52073 * 297.32390 * 11 10 9 30 30 H 1.09004 * 110.24820 * 29.56681 * 12 11 10 31 31 H 1.08997 * 110.24898 * 151.47728 * 12 11 10 32 32 H 0.97002 * 119.99462 * 334.99289 * 15 13 12 33 33 H 1.08006 * 124.61790 * 0.02562 * 19 18 16 34 34 H 1.08997 * 110.51986 * 224.85371 * 20 19 18 35 35 H 1.08999 * 110.24257 * 102.61758 * 20 19 18 36 36 H 1.09004 * 110.98096 * 266.70830 * 21 20 19 37 37 H 1.08992 * 111.02152 * 142.92287 * 21 20 19 38 38 H 1.08994 * 110.36859 * 315.43595 * 22 18 16 39 39 H 1.09000 * 110.36719 * 77.76160 * 22 18 16 40 40 H 1.08999 * 109.35974 * 81.33846 * 23 13 12 41 41 H 1.09004 * 109.36049 * 201.06453 * 23 13 12 42 42 H 1.09002 * 108.16374 * 33.30193 * 24 9 7 43 43 H 1.08998 * 108.16060 * 149.87454 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0421 -1.2300 -0.3173 9 7 1.3851 -2.3536 0.3986 10 6 0.1853 -2.2979 1.3000 11 6 -0.9806 -2.6839 0.5060 12 6 -0.8819 -4.0715 -0.1193 13 6 -0.2302 -3.8618 -1.4552 14 1 -0.3811 -2.8291 -1.7698 15 7 -0.8441 -4.7591 -2.4372 16 6 -0.8192 -4.4429 -3.7471 17 8 -0.2877 -3.4124 -4.1139 18 6 -1.4351 -5.3443 -4.7331 19 6 -1.4687 -5.1214 -6.0399 20 6 -2.1730 -6.2493 -6.7577 21 6 -2.2097 -7.4089 -5.7364 22 6 -2.1211 -6.6474 -4.3942 23 6 1.2885 -4.1542 -1.3787 24 6 1.8619 -3.6320 -0.0435 25 1 -0.4850 0.8400 -0.0004 26 1 0.3138 -2.9922 2.1304 27 1 0.0550 -1.2848 1.6804 28 1 -1.8613 -2.6549 1.1476 29 1 -1.1118 -1.9547 -0.2935 30 1 -0.2672 -4.7225 0.5024 31 1 -1.8762 -4.5000 -0.2452 32 1 -1.2682 -5.5810 -2.1445 33 1 -1.0471 -4.2536 -6.5254 34 1 -1.6150 -6.5441 -7.6464 35 1 -3.1856 -5.9500 -7.0283 36 1 -1.3536 -8.0709 -5.8665 37 1 -3.1446 -7.9645 -5.8090 38 1 -1.5277 -7.2128 -3.6757 39 1 -3.1191 -6.4590 -3.9985 40 1 1.4534 -5.2294 -1.4487 41 1 1.7944 -3.6564 -2.2060 42 1 2.9457 -3.5741 -0.1445 43 1 1.6371 -4.3649 0.7313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052302800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:15 Heat of formation + Delta-G solvation = 0.632097 kcal Electronic energy + Delta-G solvation = -22520.984435 eV Core-core repulsion = 19373.800687 eV Total energy + Delta-G solvation = -3147.183748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.85548 -38.25504 -37.15935 -34.54174 -32.23202 -31.54124 -30.20806 -29.16760 -28.33419 -26.07823 -24.01982 -23.25618 -21.73724 -20.76251 -20.10628 -19.04521 -18.32535 -17.04310 -16.64522 -15.79655 -15.44419 -14.99482 -14.57615 -14.31833 -13.76440 -13.70547 -13.15968 -12.97521 -12.88918 -12.36871 -12.23336 -12.07042 -11.77649 -11.73352 -11.45625 -11.39384 -11.34002 -11.20667 -10.71788 -10.56077 -10.33366 -10.16836 -9.99287 -9.71975 -9.45213 -9.36450 -9.29696 -8.98802 -8.49303 -8.28292 -6.64681 -5.71936 -3.10281 1.49681 3.44748 3.51708 3.53874 3.62735 3.65486 4.38546 4.47229 4.58764 4.77862 5.02046 5.18773 5.39396 5.45377 5.47789 5.50409 5.59113 5.61991 5.63780 5.74320 5.81826 5.93559 5.96373 6.06809 6.29619 6.32656 6.37538 6.46511 6.51507 6.54245 6.76441 6.93306 6.96318 6.99608 7.09402 7.22041 7.27541 7.63950 7.81608 7.99406 8.02923 8.50102 8.68804 9.26533 9.94033 10.46343 11.35923 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.004468 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.447034 B = 6265.582585 C = 6764.772078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.155 3.845 14 H 0.102 0.898 15 N -0.722 5.722 16 C 0.555 3.445 17 O -0.534 6.534 18 C -0.187 4.187 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.123 4.123 22 C -0.091 4.091 23 C -0.151 4.151 24 C 0.162 3.838 25 H 0.252 0.748 26 H 0.006 0.994 27 H 0.091 0.909 28 H 0.029 0.971 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.390 0.610 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -15.423 -6.782 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.120 0.880 15 N -0.372 5.372 16 C 0.342 3.658 17 O -0.412 6.412 18 C -0.190 4.190 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.160 4.160 22 C -0.128 4.128 23 C -0.193 4.193 24 C 0.032 3.968 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.224 0.776 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.201 -14.501 -6.979 17.246 hybrid contribution 0.128 0.473 -0.102 0.500 sum -6.073 -14.028 -7.081 16.847 Atomic orbital electron populations 1.69959 1.05095 1.25179 1.54313 1.24880 0.95211 0.98200 1.01171 0.86341 0.79180 0.83914 0.77630 1.21555 1.21683 1.20665 1.19200 0.93721 0.85314 1.39606 0.91509 1.44292 1.33720 1.00900 1.52002 1.20165 0.85210 1.00537 0.89890 1.20940 0.98457 0.95040 1.02440 1.21358 0.98693 0.99751 0.96102 1.21280 0.92094 0.94940 0.86494 0.88008 1.46427 1.58683 1.25430 1.06689 1.17985 0.79754 0.85459 0.82634 1.90843 1.44933 1.25551 1.79862 1.22011 1.03559 0.98304 0.95140 1.24000 0.94034 0.98151 0.94440 1.21449 1.00610 0.93506 0.98646 1.22421 1.02327 0.97125 0.94169 1.21245 1.00271 0.92969 0.98337 1.23227 0.95412 0.98474 1.02175 1.20257 0.96413 0.88250 0.91900 0.93802 0.97584 0.89125 0.95190 0.87926 0.91914 0.92892 0.77648 0.84525 0.90433 0.89910 0.90913 0.90677 0.90874 0.90318 0.93708 0.92543 0.94924 0.95381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 9.43 55.49 0.52 -25.02 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 3 Si 0.90 22.19 29.60 -169.99 -5.03 17.16 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.92 9.62 -15.06 -0.14 -7.06 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 9 N -0.59 -14.66 2.61 -175.40 -0.46 -15.12 16 10 C 0.17 3.86 5.25 -5.20 -0.03 3.83 16 11 C -0.13 -2.78 5.02 -30.19 -0.15 -2.94 16 12 C -0.12 -2.18 5.33 -28.41 -0.15 -2.33 16 13 C 0.15 3.07 2.22 -68.39 -0.15 2.92 16 14 H 0.10 2.60 6.26 -51.93 -0.33 2.27 16 15 N -0.72 -11.88 4.97 -55.44 -0.28 -12.16 16 16 C 0.55 10.00 7.74 -12.66 -0.10 9.90 16 17 O -0.53 -12.34 16.43 5.27 0.09 -12.25 16 18 C -0.19 -2.53 6.09 -102.72 -0.63 -3.16 16 19 C -0.09 -1.06 10.43 -36.01 -0.38 -1.43 16 20 C -0.11 -0.89 6.80 -26.86 -0.18 -1.07 16 21 C -0.12 -0.95 7.16 -25.08 -0.18 -1.13 16 22 C -0.09 -0.87 6.02 -26.86 -0.16 -1.03 16 23 C -0.15 -3.05 5.97 -25.02 -0.15 -3.20 16 24 C 0.16 3.47 5.13 -4.93 -0.03 3.44 16 25 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 27 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.10 2.62 5.29 -51.93 -0.27 2.34 16 30 H 0.06 1.07 6.28 -51.93 -0.33 0.75 16 31 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.39 5.01 7.49 -40.82 -0.31 4.71 16 33 H 0.14 1.77 8.03 -52.48 -0.42 1.35 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.79 8.12 -51.93 -0.42 0.36 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 43 H 0.03 0.54 6.89 -51.93 -0.36 0.19 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -31.52 331.47 -9.58 -41.10 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.91 Total: 4.54 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.51 Total: -3.24 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.21 Total: -52.30 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.52 -9.58 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052302800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.733 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds