Wall clock time and date at job start Mon Mar 30 2020 23:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48496 * 109.46904 * 269.99539 * 3 2 1 5 5 H 1.48494 * 109.47399 * 29.99822 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00042 * 3 2 1 7 7 C 1.38817 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99522 * 160.13234 * 7 2 1 9 9 N 1.36933 * 120.00031 * 340.41436 * 7 2 1 10 10 C 1.50170 * 120.53573 * 336.76561 * 9 7 2 11 11 C 1.46242 * 107.53356 * 109.56692 * 10 9 7 12 12 C 1.52519 * 114.27692 * 58.40698 * 11 10 9 13 13 C 1.50120 * 105.41545 * 270.59397 * 12 11 10 14 14 H 1.08997 * 109.21162 * 337.33965 * 13 12 11 15 15 N 1.46503 * 109.20942 * 217.98579 * 13 12 11 16 16 C 1.34771 * 119.99922 * 155.00313 * 15 13 12 17 17 O 1.21612 * 120.00330 * 359.97438 * 16 15 13 18 18 C 1.47111 * 119.99843 * 179.97438 * 16 15 13 19 19 C 1.32611 * 124.62177 * 179.69519 * 18 16 15 20 20 C 1.51109 * 110.76011 * 179.84121 * 19 18 16 21 21 C 1.54575 * 104.90156 * 343.80833 * 20 19 18 22 22 C 1.51112 * 124.61657 * 359.97438 * 18 16 15 23 23 C 1.54844 * 110.81897 * 97.68509 * 13 12 11 24 24 C 1.43426 * 120.53767 * 156.48703 * 9 7 2 25 25 H 0.96994 * 119.99966 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.84452 * 229.07447 * 10 9 7 27 27 H 1.09000 * 109.84581 * 350.05934 * 10 9 7 28 28 H 1.08997 * 108.51728 * 179.64998 * 11 10 9 29 29 H 1.08999 * 108.52073 * 297.32390 * 11 10 9 30 30 H 1.09004 * 110.24820 * 29.56681 * 12 11 10 31 31 H 1.08997 * 110.24898 * 151.47728 * 12 11 10 32 32 H 0.97002 * 119.99462 * 334.99289 * 15 13 12 33 33 H 1.08006 * 124.61790 * 0.02562 * 19 18 16 34 34 H 1.08997 * 110.51986 * 224.85371 * 20 19 18 35 35 H 1.08999 * 110.24257 * 102.61758 * 20 19 18 36 36 H 1.09004 * 110.98096 * 266.70830 * 21 20 19 37 37 H 1.08992 * 111.02152 * 142.92287 * 21 20 19 38 38 H 1.08994 * 110.36859 * 315.43595 * 22 18 16 39 39 H 1.09000 * 110.36719 * 77.76160 * 22 18 16 40 40 H 1.08999 * 109.35974 * 81.33846 * 23 13 12 41 41 H 1.09004 * 109.36049 * 201.06453 * 23 13 12 42 42 H 1.09002 * 108.16374 * 33.30193 * 24 9 7 43 43 H 1.08998 * 108.16060 * 149.87454 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0421 -1.2300 -0.3173 9 7 1.3851 -2.3536 0.3986 10 6 0.1853 -2.2979 1.3000 11 6 -0.9806 -2.6839 0.5060 12 6 -0.8819 -4.0715 -0.1193 13 6 -0.2302 -3.8618 -1.4552 14 1 -0.3811 -2.8291 -1.7698 15 7 -0.8441 -4.7591 -2.4372 16 6 -0.8192 -4.4429 -3.7471 17 8 -0.2877 -3.4124 -4.1139 18 6 -1.4351 -5.3443 -4.7331 19 6 -1.4687 -5.1214 -6.0399 20 6 -2.1730 -6.2493 -6.7577 21 6 -2.2097 -7.4089 -5.7364 22 6 -2.1211 -6.6474 -4.3942 23 6 1.2885 -4.1542 -1.3787 24 6 1.8619 -3.6320 -0.0435 25 1 -0.4850 0.8400 -0.0004 26 1 0.3138 -2.9922 2.1304 27 1 0.0550 -1.2848 1.6804 28 1 -1.8613 -2.6549 1.1476 29 1 -1.1118 -1.9547 -0.2935 30 1 -0.2672 -4.7225 0.5024 31 1 -1.8762 -4.5000 -0.2452 32 1 -1.2682 -5.5810 -2.1445 33 1 -1.0471 -4.2536 -6.5254 34 1 -1.6150 -6.5441 -7.6464 35 1 -3.1856 -5.9500 -7.0283 36 1 -1.3536 -8.0709 -5.8665 37 1 -3.1446 -7.9645 -5.8090 38 1 -1.5277 -7.2128 -3.6757 39 1 -3.1191 -6.4590 -3.9985 40 1 1.4534 -5.2294 -1.4487 41 1 1.7944 -3.6564 -2.2060 42 1 2.9457 -3.5741 -0.1445 43 1 1.6371 -4.3649 0.7313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052302800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:14 Heat of formation + Delta-G solvation = -19.220101 kcal Electronic energy + Delta-G solvation = -22521.845291 eV Core-core repulsion = 19373.800687 eV Total energy + Delta-G solvation = -3148.044604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21408 -39.62501 -38.47213 -36.26928 -34.03712 -33.34874 -31.87253 -30.15215 -29.20990 -27.89977 -25.75171 -24.98644 -23.01697 -21.85493 -21.58279 -20.76643 -19.57744 -18.60152 -18.10901 -17.08375 -16.96304 -16.49328 -16.15804 -15.83878 -15.51084 -15.29635 -14.99460 -14.24858 -13.95489 -13.76413 -13.57468 -13.49221 -13.24580 -13.16123 -12.93714 -12.69250 -12.59485 -12.38545 -12.17985 -12.02520 -11.98700 -11.92588 -11.75907 -11.58239 -11.21443 -11.13142 -10.86235 -10.45725 -10.07994 -9.77432 -8.64966 -7.83934 -5.23842 0.39748 1.43858 1.45707 1.54710 2.30774 2.31805 2.53452 3.29096 3.55789 3.61834 3.66292 4.01703 4.05613 4.17466 4.23700 4.31927 4.32868 4.47996 4.62592 4.73853 4.79898 4.83960 4.86838 4.88548 4.92250 4.99617 5.06430 5.17080 5.20006 5.27653 5.29356 5.36513 5.40274 5.42751 5.50304 5.55696 5.66247 5.68696 5.78500 6.19440 6.42100 6.66669 7.18780 7.34118 7.92494 8.39962 9.20291 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025164 B = 0.004468 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.447034 B = 6265.582585 C = 6764.772078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 0.956 3.044 4 H -0.296 1.296 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.057 0.943 9 N -0.602 5.602 10 C 0.167 3.833 11 C -0.124 4.124 12 C -0.106 4.106 13 C 0.166 3.834 14 H 0.037 0.963 15 N -0.706 5.706 16 C 0.546 3.454 17 O -0.601 6.601 18 C -0.210 4.210 19 C -0.082 4.082 20 C -0.101 4.101 21 C -0.115 4.115 22 C -0.086 4.086 23 C -0.140 4.140 24 C 0.156 3.844 25 H 0.246 0.754 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.413 0.587 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.013 0.987 42 H 0.026 0.974 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -18.885 -6.612 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.240 4.240 3 Si 0.785 3.215 4 H -0.224 1.224 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.395 4.395 8 H 0.075 0.925 9 N -0.324 5.324 10 C 0.044 3.956 11 C -0.163 4.163 12 C -0.143 4.143 13 C 0.062 3.938 14 H 0.055 0.945 15 N -0.357 5.357 16 C 0.336 3.664 17 O -0.484 6.484 18 C -0.213 4.213 19 C -0.102 4.102 20 C -0.137 4.137 21 C -0.153 4.153 22 C -0.123 4.123 23 C -0.182 4.182 24 C 0.027 3.973 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.251 0.749 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.401 -18.031 -6.784 20.638 hybrid contribution 0.518 1.566 -0.220 1.664 sum -6.883 -16.465 -7.005 19.171 Atomic orbital electron populations 1.70144 1.05937 1.25095 1.55038 1.25534 0.96026 1.00769 1.01627 0.85462 0.78451 0.80632 0.76982 1.22368 1.21435 1.19687 1.19395 0.93648 0.86938 1.39479 0.92477 1.44471 1.34154 1.01259 1.52559 1.20131 0.85408 0.99404 0.90625 1.20753 0.98395 0.96100 1.01065 1.21265 1.00770 0.97973 0.94326 1.20827 0.92410 0.92361 0.88193 0.94484 1.46164 1.58042 1.25624 1.05833 1.18813 0.78824 0.85183 0.83613 1.90810 1.47998 1.28657 1.80895 1.22013 1.05150 0.99810 0.94335 1.24357 0.92707 0.98518 0.94645 1.21530 1.00985 0.92138 0.99063 1.22454 1.04014 0.96606 0.92191 1.21306 1.00361 0.90689 0.99905 1.23103 0.95238 1.00008 0.99869 1.20396 0.96017 0.87609 0.93239 0.94486 0.94667 0.92564 0.93400 0.92551 0.89588 0.89612 0.74926 0.86614 0.88794 0.88274 0.90255 0.88148 0.89736 0.89186 0.90072 0.96760 0.95588 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.37 9.43 21.65 0.20 -54.16 16 2 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16 3 Si 0.96 47.18 29.60 68.60 2.03 49.21 16 4 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.26 -15.19 9.62 84.04 0.81 -14.38 16 8 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 9 N -0.60 -30.46 2.61 -708.83 -1.85 -32.31 16 10 C 0.17 7.79 5.25 83.58 0.44 8.23 16 11 C -0.12 -5.29 5.02 28.35 0.14 -5.14 16 12 C -0.11 -3.55 5.33 29.51 0.16 -3.39 16 13 C 0.17 6.63 2.22 44.69 0.10 6.73 16 14 H 0.04 2.00 6.26 -2.39 -0.01 1.99 16 15 N -0.71 -22.63 4.97 -447.55 -2.22 -24.86 16 16 C 0.55 20.14 7.74 86.57 0.67 20.81 16 17 O -0.60 -29.76 16.43 -4.07 -0.07 -29.83 16 18 C -0.21 -5.49 6.09 -18.56 -0.11 -5.60 16 19 C -0.08 -1.96 10.43 24.66 0.26 -1.70 16 20 C -0.10 -1.39 6.80 30.51 0.21 -1.18 16 21 C -0.12 -1.29 7.16 31.66 0.23 -1.06 16 22 C -0.09 -1.34 6.02 30.51 0.18 -1.16 16 23 C -0.14 -5.67 5.97 31.70 0.19 -5.48 16 24 C 0.16 6.60 5.13 87.43 0.45 7.04 16 25 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.04 1.43 8.13 -2.38 -0.02 1.41 16 27 H 0.06 3.00 6.05 -2.39 -0.01 2.99 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 2.99 5.29 -2.39 -0.01 2.98 16 30 H 0.09 2.55 6.28 -2.39 -0.01 2.54 16 31 H 0.09 2.34 7.86 -2.39 -0.02 2.32 16 32 H 0.41 9.39 7.49 -92.71 -0.69 8.69 16 33 H 0.12 3.16 8.03 -2.91 -0.02 3.14 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 1.13 7.83 -2.39 -0.02 1.11 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 2.66 8.12 -2.39 -0.02 2.65 16 41 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 43 H 0.06 2.20 6.89 -2.39 -0.02 2.19 16 Total: -1.00 -75.35 331.47 2.53 -72.81 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.30 Total: 17.52 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.13 Total: 1.61 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.87 Total: -111.33 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.07 Total: -29.83 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -75.35 2.53 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052302800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.594 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds