Wall clock time and date at job start Tue Mar 31 2020 00:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46895 * 273.99163 * 3 2 1 5 5 H 1.48489 * 109.47427 * 33.99749 * 3 2 1 6 6 H 1.48506 * 109.47169 * 153.99831 * 3 2 1 7 7 C 1.38816 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00048 * 196.72941 * 7 2 1 9 9 N 1.36937 * 119.99603 * 16.73130 * 7 2 1 10 10 C 1.47595 * 118.64683 * 27.15685 * 9 7 2 11 11 C 1.53950 * 112.14474 * 137.84497 * 10 9 7 12 12 C 1.50878 * 110.09354 * 319.44132 * 11 10 9 13 13 C 1.52568 * 109.36357 * 91.88093 * 12 11 10 14 14 H 1.09007 * 108.38832 * 36.15498 * 13 12 11 15 15 N 1.46500 * 108.51336 * 153.73401 * 13 12 11 16 16 C 1.34773 * 119.99698 * 209.77007 * 15 13 12 17 17 O 1.21276 * 120.00309 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99709 * 180.02562 * 16 15 13 19 19 H 1.09001 * 115.56457 * 34.30542 * 18 16 15 20 20 C 1.53006 * 117.49772 * 248.61616 * 18 16 15 21 21 C 1.52993 * 117.49922 * 179.97438 * 18 16 15 22 22 C 1.52994 * 138.59246 * 238.38056 * 21 18 16 23 23 C 1.53000 * 138.58660 * 336.59730 * 21 18 16 24 24 C 1.47094 * 114.32690 * 274.98863 * 13 12 11 25 25 C 1.44587 * 118.64173 * 207.13944 * 9 7 2 26 26 H 0.97003 * 119.99802 * 359.97438 * 1 2 3 27 27 H 1.09003 * 108.95057 * 258.53419 * 10 9 7 28 28 H 1.09002 * 108.94861 * 17.25157 * 10 9 7 29 29 H 1.09004 * 109.36444 * 79.62599 * 11 10 9 30 30 H 1.09000 * 109.36750 * 199.37405 * 11 10 9 31 31 H 1.08997 * 109.48940 * 331.91242 * 12 11 10 32 32 H 1.08999 * 109.49014 * 211.84974 * 12 11 10 33 33 H 0.97003 * 120.00047 * 29.76621 * 15 13 12 34 34 H 1.08995 * 117.50267 * 145.01776 * 20 18 16 35 35 H 1.09001 * 117.51474 * 359.97438 * 20 18 16 36 36 H 1.08996 * 117.50178 * 238.38481 * 22 21 18 37 37 H 1.08999 * 117.49563 * 23.40039 * 22 21 18 38 38 H 1.08997 * 117.49644 * 336.58934 * 23 21 18 39 39 H 1.08997 * 117.49401 * 121.61754 * 23 21 18 40 40 H 1.09001 * 109.32485 * 183.05779 * 24 13 12 41 41 H 1.08998 * 109.32882 * 302.53996 * 24 13 12 42 42 H 1.08996 * 109.45131 * 150.70985 * 25 9 7 43 43 H 1.09000 * 109.44514 * 30.78677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4132 2.0951 -1.3967 5 1 1.4925 2.6268 0.7828 6 1 3.5875 1.4173 0.6138 7 6 2.0103 -1.2022 0.0005 8 1 3.0560 -1.2218 0.2698 9 7 1.3690 -2.3631 -0.3404 10 6 0.2081 -2.2897 -1.2489 11 6 0.2244 -3.4115 -2.3030 12 6 1.6287 -3.6241 -2.8121 13 6 2.3128 -4.7004 -1.9748 14 1 1.5707 -5.4537 -1.7101 15 7 3.3486 -5.3373 -2.7920 16 6 3.6779 -6.6265 -2.5779 17 8 3.1172 -7.2593 -1.7085 18 6 4.7438 -7.2815 -3.4182 19 1 5.5644 -6.6334 -3.7260 20 6 4.3019 -8.3737 -4.3944 21 6 5.0726 -8.7468 -3.1260 22 6 6.2824 -9.5935 -2.7257 23 6 4.9622 -9.7382 -1.9659 24 6 2.9343 -4.2022 -0.7381 25 6 1.8574 -3.6103 0.2043 26 1 -0.4850 0.8401 0.0004 27 1 -0.7066 -2.3692 -0.6615 28 1 0.2182 -1.3264 -1.7589 29 1 -0.1408 -4.3351 -1.8536 30 1 -0.4220 -3.1344 -3.1358 31 1 2.1886 -2.6922 -2.7344 32 1 1.5935 -3.9417 -3.8542 33 1 3.7973 -4.8310 -3.4873 34 1 4.8317 -8.4442 -5.3443 35 1 3.2404 -8.6190 -4.4287 36 1 6.5709 -10.4059 -3.3926 37 1 7.1035 -9.0890 -2.2165 38 1 4.9149 -9.3288 -0.9568 39 1 4.3823 -10.6458 -2.1331 40 1 3.4429 -5.0238 -0.2337 41 1 3.6614 -3.4289 -0.9860 42 1 1.0304 -4.3140 0.2978 43 1 2.2938 -3.4310 1.1868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052743806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:07 Heat of formation + Delta-G solvation = 41.669403 kcal Electronic energy + Delta-G solvation = -22130.449045 eV Core-core repulsion = 18985.044808 eV Total energy + Delta-G solvation = -3145.404237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.09629 -38.32245 -37.03525 -34.70409 -32.89858 -32.27394 -31.56927 -29.93392 -26.18210 -24.68139 -23.72890 -22.77217 -22.53768 -20.47705 -20.11771 -19.33028 -18.93675 -16.99960 -16.68847 -15.89312 -15.25076 -15.15197 -15.01847 -14.46912 -14.21046 -13.96014 -13.52304 -13.37311 -12.79799 -12.57694 -12.48883 -11.94806 -11.83273 -11.62876 -11.39103 -11.24082 -10.83659 -10.68277 -10.43513 -10.37263 -10.30522 -10.20595 -10.14499 -10.06648 -9.87713 -9.74519 -9.59403 -9.42584 -8.74864 -8.38247 -6.63232 -5.76331 -3.20020 2.60906 3.16707 3.37419 3.45116 3.46307 3.59588 3.74558 4.14331 4.51533 4.62296 4.68837 5.00510 5.20299 5.29131 5.35780 5.41425 5.44015 5.47854 5.48755 5.50137 5.64951 5.76220 5.77879 5.79456 6.03514 6.04618 6.08979 6.24863 6.36552 6.49696 6.52563 6.68576 6.78018 6.85995 6.87959 6.95870 7.08072 7.44039 7.70914 7.76594 7.84885 8.45587 8.49690 9.26496 9.93516 10.39422 11.31047 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.003698 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.682621 B = 7570.843119 C = 7775.138413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.178 3.822 11 C -0.141 4.141 12 C -0.111 4.111 13 C 0.161 3.839 14 H 0.073 0.927 15 N -0.725 5.725 16 C 0.537 3.463 17 O -0.538 6.538 18 C -0.141 4.141 19 H 0.121 0.879 20 C -0.102 4.102 21 C -0.201 4.201 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.153 4.153 25 C 0.162 3.838 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.396 0.604 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.821 -14.756 -9.746 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.149 4.149 13 C 0.059 3.941 14 H 0.091 0.909 15 N -0.375 5.375 16 C 0.322 3.678 17 O -0.414 6.414 18 C -0.162 4.162 19 H 0.139 0.861 20 C -0.139 4.139 21 C -0.202 4.202 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.194 4.194 25 C 0.034 3.966 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.229 0.771 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.247 -15.063 -9.087 19.429 hybrid contribution 0.733 1.316 -0.433 1.568 sum 8.981 -13.747 -9.520 18.981 Atomic orbital electron populations 1.70084 1.05210 1.25352 1.54037 1.25037 0.95224 0.98326 1.00795 0.86325 0.79228 0.83983 0.77529 1.21563 1.21837 1.20446 1.19217 0.92714 0.85158 1.41722 0.91767 1.43672 1.34468 1.01817 1.51187 1.20992 0.89110 0.95438 0.89133 1.21981 0.95113 1.00979 0.99926 1.21243 0.97689 0.99131 0.96870 1.20021 0.88881 0.94510 0.90734 0.90875 1.46442 1.41107 1.11620 1.38292 1.19612 0.82753 0.81860 0.83564 1.90683 1.53731 1.63703 1.33332 1.22028 1.00334 0.90990 1.02834 0.86070 1.22648 1.00465 0.98387 0.92411 1.21136 1.04581 0.94166 1.00309 1.22758 0.91347 1.00259 1.02484 1.22587 0.98344 0.98357 0.95670 1.21855 1.00898 0.99837 0.96860 1.20570 0.93791 0.88188 0.94095 0.93728 0.95664 0.90991 0.93393 0.92562 0.90143 0.93186 0.77114 0.87767 0.88139 0.88473 0.88590 0.88121 0.88631 0.93022 0.92025 0.94825 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.13 55.49 0.62 -25.32 16 2 C 0.00 0.13 4.83 -17.43 -0.08 0.05 16 3 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.95 9.42 -15.06 -0.14 -7.10 16 8 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.45 2.27 -172.09 -0.39 -14.84 16 10 C 0.18 4.18 4.67 -2.95 -0.01 4.17 16 11 C -0.14 -2.61 5.71 -27.30 -0.16 -2.76 16 12 C -0.11 -1.88 5.00 -28.02 -0.14 -2.02 16 13 C 0.16 2.74 1.96 -70.99 -0.14 2.60 16 14 H 0.07 1.38 6.65 -51.93 -0.35 1.04 16 15 N -0.72 -10.23 4.88 -56.81 -0.28 -10.50 16 16 C 0.54 7.97 7.46 -10.98 -0.08 7.89 16 17 O -0.54 -10.02 15.74 5.56 0.09 -9.93 16 18 C -0.14 -1.58 6.19 -91.77 -0.57 -2.15 16 19 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.10 -0.98 10.24 -26.71 -0.27 -1.25 16 21 C -0.20 -2.21 5.06 -154.49 -0.78 -2.99 16 22 C -0.13 -1.16 10.53 -26.73 -0.28 -1.44 16 23 C -0.11 -1.22 10.16 -26.73 -0.27 -1.49 16 24 C -0.15 -2.88 5.20 -28.58 -0.15 -3.03 16 25 C 0.16 3.50 5.66 -4.08 -0.02 3.48 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 27 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 28 H 0.07 1.86 6.42 -51.93 -0.33 1.53 16 29 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 32 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.40 4.52 8.61 -40.82 -0.35 4.16 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.98 7.95 -51.93 -0.41 0.56 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 43 H 0.05 1.07 7.99 -51.93 -0.41 0.65 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -30.85 343.03 -10.16 -41.01 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.23 Total: 3.96 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.10 Total: -6.04 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.05 Total: -50.66 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.85 -10.16 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052743806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.682 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds