Wall clock time and date at job start Tue Mar 31 2020 00:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46895 * 273.99163 * 3 2 1 5 5 H 1.48489 * 109.47427 * 33.99749 * 3 2 1 6 6 H 1.48506 * 109.47169 * 153.99831 * 3 2 1 7 7 C 1.38816 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00048 * 196.72941 * 7 2 1 9 9 N 1.36937 * 119.99603 * 16.73130 * 7 2 1 10 10 C 1.47595 * 118.64683 * 27.15685 * 9 7 2 11 11 C 1.53950 * 112.14474 * 137.84497 * 10 9 7 12 12 C 1.50878 * 110.09354 * 319.44132 * 11 10 9 13 13 C 1.52568 * 109.36357 * 91.88093 * 12 11 10 14 14 H 1.09007 * 108.38832 * 36.15498 * 13 12 11 15 15 N 1.46500 * 108.51336 * 153.73401 * 13 12 11 16 16 C 1.34773 * 119.99698 * 209.77007 * 15 13 12 17 17 O 1.21276 * 120.00309 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99709 * 180.02562 * 16 15 13 19 19 H 1.09001 * 115.56457 * 34.30542 * 18 16 15 20 20 C 1.53006 * 117.49772 * 248.61616 * 18 16 15 21 21 C 1.52993 * 117.49922 * 179.97438 * 18 16 15 22 22 C 1.52994 * 138.59246 * 238.38056 * 21 18 16 23 23 C 1.53000 * 138.58660 * 336.59730 * 21 18 16 24 24 C 1.47094 * 114.32690 * 274.98863 * 13 12 11 25 25 C 1.44587 * 118.64173 * 207.13944 * 9 7 2 26 26 H 0.97003 * 119.99802 * 359.97438 * 1 2 3 27 27 H 1.09003 * 108.95057 * 258.53419 * 10 9 7 28 28 H 1.09002 * 108.94861 * 17.25157 * 10 9 7 29 29 H 1.09004 * 109.36444 * 79.62599 * 11 10 9 30 30 H 1.09000 * 109.36750 * 199.37405 * 11 10 9 31 31 H 1.08997 * 109.48940 * 331.91242 * 12 11 10 32 32 H 1.08999 * 109.49014 * 211.84974 * 12 11 10 33 33 H 0.97003 * 120.00047 * 29.76621 * 15 13 12 34 34 H 1.08995 * 117.50267 * 145.01776 * 20 18 16 35 35 H 1.09001 * 117.51474 * 359.97438 * 20 18 16 36 36 H 1.08996 * 117.50178 * 238.38481 * 22 21 18 37 37 H 1.08999 * 117.49563 * 23.40039 * 22 21 18 38 38 H 1.08997 * 117.49644 * 336.58934 * 23 21 18 39 39 H 1.08997 * 117.49401 * 121.61754 * 23 21 18 40 40 H 1.09001 * 109.32485 * 183.05779 * 24 13 12 41 41 H 1.08998 * 109.32882 * 302.53996 * 24 13 12 42 42 H 1.08996 * 109.45131 * 150.70985 * 25 9 7 43 43 H 1.09000 * 109.44514 * 30.78677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4132 2.0951 -1.3967 5 1 1.4925 2.6268 0.7828 6 1 3.5875 1.4173 0.6138 7 6 2.0103 -1.2022 0.0005 8 1 3.0560 -1.2218 0.2698 9 7 1.3690 -2.3631 -0.3404 10 6 0.2081 -2.2897 -1.2489 11 6 0.2244 -3.4115 -2.3030 12 6 1.6287 -3.6241 -2.8121 13 6 2.3128 -4.7004 -1.9748 14 1 1.5707 -5.4537 -1.7101 15 7 3.3486 -5.3373 -2.7920 16 6 3.6779 -6.6265 -2.5779 17 8 3.1172 -7.2593 -1.7085 18 6 4.7438 -7.2815 -3.4182 19 1 5.5644 -6.6334 -3.7260 20 6 4.3019 -8.3737 -4.3944 21 6 5.0726 -8.7468 -3.1260 22 6 6.2824 -9.5935 -2.7257 23 6 4.9622 -9.7382 -1.9659 24 6 2.9343 -4.2022 -0.7381 25 6 1.8574 -3.6103 0.2043 26 1 -0.4850 0.8401 0.0004 27 1 -0.7066 -2.3692 -0.6615 28 1 0.2182 -1.3264 -1.7589 29 1 -0.1408 -4.3351 -1.8536 30 1 -0.4220 -3.1344 -3.1358 31 1 2.1886 -2.6922 -2.7344 32 1 1.5935 -3.9417 -3.8542 33 1 3.7973 -4.8310 -3.4873 34 1 4.8317 -8.4442 -5.3443 35 1 3.2404 -8.6190 -4.4287 36 1 6.5709 -10.4059 -3.3926 37 1 7.1035 -9.0890 -2.2165 38 1 4.9149 -9.3288 -0.9568 39 1 4.3823 -10.6458 -2.1331 40 1 3.4429 -5.0238 -0.2337 41 1 3.6614 -3.4289 -0.9860 42 1 1.0304 -4.3140 0.2978 43 1 2.2938 -3.4310 1.1868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052743806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:04 Heat of formation + Delta-G solvation = 24.043014 kcal Electronic energy + Delta-G solvation = -22131.213382 eV Core-core repulsion = 18985.044808 eV Total energy + Delta-G solvation = -3146.168575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28208 -39.60728 -38.23394 -36.31226 -34.17442 -33.51436 -33.31200 -31.60330 -27.97795 -26.09288 -25.44460 -24.17328 -23.27065 -21.58099 -21.54097 -20.99577 -19.97324 -18.58069 -18.08059 -17.25105 -16.98887 -16.14188 -15.89052 -15.84235 -15.65283 -15.39435 -15.23584 -15.02749 -14.31107 -14.16393 -13.61763 -13.48670 -13.20143 -13.02542 -12.72761 -12.64342 -12.41453 -12.35365 -12.13561 -12.04292 -11.76435 -11.55361 -11.51883 -11.36189 -11.15439 -11.05560 -10.91234 -10.65456 -10.44711 -10.04727 -8.65650 -7.84926 -5.31917 1.47259 1.48463 1.53429 1.57626 2.11798 2.52530 2.76778 2.89283 3.28390 3.35786 3.64588 3.73959 3.83547 3.89283 4.09323 4.15997 4.31745 4.43078 4.43203 4.50718 4.61900 4.69067 4.75632 4.76224 4.78955 4.83126 4.95520 4.97695 5.02680 5.05419 5.11154 5.13552 5.23341 5.28113 5.32148 5.47897 5.56926 5.59724 5.68512 5.79795 6.41583 6.65245 7.19261 7.33125 7.94207 8.34719 9.20394 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.003698 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.682621 B = 7570.843119 C = 7775.138413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.188 3.812 11 C -0.130 4.130 12 C -0.100 4.100 13 C 0.169 3.831 14 H 0.057 0.943 15 N -0.714 5.714 16 C 0.532 3.468 17 O -0.582 6.582 18 C -0.147 4.147 19 H 0.148 0.852 20 C -0.083 4.083 21 C -0.227 4.227 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.133 4.133 25 C 0.160 3.840 26 H 0.249 0.751 27 H -0.009 1.009 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 -15.600 -12.110 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.792 3.208 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.063 3.937 11 C -0.169 4.169 12 C -0.138 4.138 13 C 0.065 3.935 14 H 0.075 0.925 15 N -0.365 5.365 16 C 0.320 3.680 17 O -0.462 6.462 18 C -0.168 4.168 19 H 0.166 0.834 20 C -0.120 4.120 21 C -0.227 4.227 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.174 4.174 25 C 0.032 3.968 26 H 0.058 0.942 27 H 0.010 0.990 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.305 -15.921 -11.479 22.169 hybrid contribution 0.077 1.517 0.386 1.568 sum 10.381 -14.404 -11.093 20.936 Atomic orbital electron populations 1.70242 1.06599 1.25713 1.55479 1.25761 0.95958 1.01341 1.01096 0.85306 0.78145 0.79834 0.77468 1.21000 1.22431 1.19511 1.19480 0.92818 0.86194 1.41055 0.91879 1.43846 1.34520 1.02095 1.51846 1.20785 0.87390 0.96084 0.89438 1.21838 0.97025 0.99002 0.99032 1.21121 0.95941 0.98132 0.98623 1.19694 0.89227 0.94108 0.90515 0.92524 1.46226 1.40414 1.11679 1.38138 1.20304 0.82872 0.81614 0.83221 1.90669 1.55461 1.64666 1.35373 1.22043 0.99976 0.91486 1.03260 0.83436 1.22757 1.00154 0.96055 0.93070 1.21433 1.06351 0.93943 1.00988 1.22846 0.90216 0.99805 1.01286 1.22582 1.00901 0.98900 0.94854 1.21586 0.99545 0.99181 0.97118 1.20647 0.94505 0.87344 0.94338 0.94184 0.99041 0.93768 0.92990 0.90317 0.91982 0.89734 0.75131 0.84526 0.89173 0.86132 0.88009 0.90488 0.88063 0.93239 0.92607 0.94795 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 11.13 21.65 0.24 -54.89 16 2 C -0.05 -2.55 4.83 84.86 0.41 -2.14 16 3 Si 0.96 44.62 29.59 68.60 2.03 46.65 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.27 -14.47 9.42 84.03 0.79 -13.68 16 8 H 0.06 3.40 7.88 -2.91 -0.02 3.38 16 9 N -0.60 -30.02 2.27 -698.37 -1.58 -31.61 16 10 C 0.19 9.03 4.67 86.49 0.40 9.43 16 11 C -0.13 -4.70 5.71 30.22 0.17 -4.53 16 12 C -0.10 -3.20 5.00 29.76 0.15 -3.05 16 13 C 0.17 5.53 1.96 43.01 0.08 5.62 16 14 H 0.06 2.10 6.65 -2.38 -0.02 2.08 16 15 N -0.71 -18.66 4.88 -452.04 -2.21 -20.87 16 16 C 0.53 15.01 7.46 87.66 0.65 15.67 16 17 O -0.58 -21.62 15.74 -3.02 -0.05 -21.66 16 18 C -0.15 -2.90 6.19 -11.54 -0.07 -2.97 16 19 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 20 C -0.08 -1.33 10.24 30.61 0.31 -1.02 16 21 C -0.23 -4.45 5.06 -52.17 -0.26 -4.71 16 22 C -0.11 -1.56 10.53 30.59 0.32 -1.24 16 23 C -0.14 -2.83 10.16 30.60 0.31 -2.52 16 24 C -0.13 -4.97 5.20 29.39 0.15 -4.82 16 25 C 0.16 7.01 5.66 87.37 0.49 7.50 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H -0.01 -0.46 8.03 -2.39 -0.02 -0.48 16 28 H 0.04 2.35 6.42 -2.39 -0.02 2.33 16 29 H 0.05 1.85 7.31 -2.38 -0.02 1.84 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.27 7.48 -2.39 -0.02 2.25 16 32 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 33 H 0.41 8.13 8.61 -92.71 -0.80 7.33 16 34 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.86 7.95 -2.39 -0.02 1.85 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 43 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16 Total: -1.00 -68.70 343.03 2.55 -66.15 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.19 Total: 18.68 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 3.92 Total: -2.46 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.55 Total: -107.36 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.70 2.55 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052743806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.192 kcal (2) G-P(sol) polarization free energy of solvation -68.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds