Wall clock time and date at job start Tue Mar 31 2020 00:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99598 * 2 1 4 4 H 1.48497 * 109.47071 * 274.73833 * 3 2 1 5 5 H 1.48492 * 109.47315 * 34.74213 * 3 2 1 6 6 H 1.48504 * 109.46791 * 154.74081 * 3 2 1 7 7 C 1.38811 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99348 * 199.52257 * 7 2 1 9 9 N 1.36930 * 120.00533 * 19.51791 * 7 2 1 10 10 C 1.50172 * 120.53688 * 31.16765 * 9 7 2 11 11 C 1.46238 * 107.53254 * 109.56631 * 10 9 7 12 12 C 1.52536 * 114.27355 * 58.40866 * 11 10 9 13 13 C 1.50121 * 105.41408 * 270.59273 * 12 11 10 14 14 H 1.09004 * 109.21301 * 337.34297 * 13 12 11 15 15 N 1.46503 * 109.21021 * 217.98041 * 13 12 11 16 16 C 1.34773 * 120.00302 * 154.35659 * 15 13 12 17 17 O 1.21287 * 119.99797 * 0.02562 * 16 15 13 18 18 C 1.50700 * 120.00540 * 180.02562 * 16 15 13 19 19 H 1.08998 * 115.54931 * 325.68007 * 18 16 15 20 20 C 1.53002 * 117.49826 * 111.38301 * 18 16 15 21 21 C 1.52994 * 117.50206 * 180.02562 * 18 16 15 22 22 C 1.52993 * 138.58626 * 121.61796 * 21 18 16 23 23 C 1.52990 * 138.58693 * 23.40980 * 21 18 16 24 24 C 1.54845 * 110.81366 * 97.68607 * 13 12 11 25 25 C 1.43432 * 120.53841 * 211.14728 * 9 7 2 26 26 H 0.97004 * 120.00570 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.84486 * 350.06173 * 10 9 7 28 28 H 1.09005 * 109.84270 * 229.07601 * 10 9 7 29 29 H 1.08996 * 108.52070 * 297.16777 * 11 10 9 30 30 H 1.08992 * 108.52004 * 179.64741 * 11 10 9 31 31 H 1.08996 * 110.24692 * 151.62218 * 12 11 10 32 32 H 1.08994 * 110.24929 * 29.56718 * 12 11 10 33 33 H 0.96998 * 119.99975 * 334.37386 * 15 13 12 34 34 H 1.09000 * 117.49861 * 214.98751 * 20 18 16 35 35 H 1.08997 * 117.49979 * 0.02562 * 20 18 16 36 36 H 1.08998 * 117.49872 * 336.60449 * 22 21 18 37 37 H 1.08998 * 117.49468 * 121.61551 * 22 21 18 38 38 H 1.09006 * 117.49594 * 238.37850 * 23 21 18 39 39 H 1.08997 * 117.50049 * 23.37669 * 23 21 18 40 40 H 1.09005 * 109.35562 * 81.33884 * 24 13 12 41 41 H 1.08998 * 109.35659 * 200.92247 * 24 13 12 42 42 H 1.09001 * 108.16286 * 33.31047 * 25 9 7 43 43 H 1.09005 * 108.16118 * 149.87133 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3974 2.1043 -1.3953 5 1 1.5012 2.6217 0.7978 6 1 3.5942 1.4134 0.5975 7 6 2.0102 -1.2022 -0.0005 8 1 3.0437 -1.2291 0.3121 9 7 1.3846 -2.3538 -0.3972 10 6 0.2988 -2.3142 -1.4338 11 6 0.8290 -2.9273 -2.6510 12 6 1.3054 -4.3653 -2.4724 13 6 2.7497 -4.2610 -2.0764 14 1 3.1447 -3.3014 -2.4101 15 7 3.5043 -5.3415 -2.7163 16 6 4.8223 -5.1932 -2.9553 17 8 5.3839 -4.1654 -2.6402 18 6 5.5984 -6.3044 -3.6141 19 1 5.2793 -7.3153 -3.3603 20 6 6.1129 -6.0612 -5.0343 21 6 7.0914 -6.0754 -3.8577 22 6 8.4272 -6.7208 -3.4839 23 6 8.2265 -5.2154 -3.2987 24 6 2.9083 -4.3707 -0.5400 25 6 1.7561 -3.6176 0.1703 26 1 -0.4851 0.8400 -0.0004 27 1 0.0153 -1.2807 -1.6334 28 1 -0.5676 -2.8755 -1.0838 29 1 1.6668 -2.3264 -3.0047 30 1 0.0504 -2.9126 -3.4135 31 1 1.2099 -4.9135 -3.4096 32 1 0.7332 -4.8574 -1.6860 33 1 3.0552 -6.1635 -2.9682 34 1 6.1322 -6.9121 -5.7153 35 1 5.8904 -5.0973 -5.4921 36 1 8.4537 -7.3392 -2.5868 37 1 9.0744 -7.0458 -4.2985 38 1 8.7418 -4.5499 -3.9914 39 1 8.1209 -4.8431 -2.2797 40 1 2.8873 -5.4209 -0.2488 41 1 3.8621 -3.9346 -0.2432 42 1 2.0472 -3.4519 1.2075 43 1 0.8771 -4.2623 0.1687 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052743807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:09 Heat of formation + Delta-G solvation = 26.975462 kcal Electronic energy + Delta-G solvation = -22264.620888 eV Core-core repulsion = 19118.579474 eV Total energy + Delta-G solvation = -3146.041414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20962 -39.67130 -38.27122 -36.23042 -34.27799 -33.54166 -33.29127 -31.59604 -28.09019 -26.01973 -25.62080 -23.99290 -23.29084 -22.03404 -21.33586 -20.86059 -19.97270 -18.54496 -18.03794 -17.22783 -16.95272 -16.23608 -15.98254 -15.89914 -15.84268 -15.32853 -15.20357 -14.97500 -14.33621 -14.02875 -13.55455 -13.46711 -13.21139 -13.18199 -12.77225 -12.66806 -12.59524 -12.37962 -12.19631 -12.04585 -11.83684 -11.60186 -11.38385 -11.19896 -11.16773 -11.06523 -10.92921 -10.69223 -10.47695 -9.97572 -8.63258 -7.90549 -5.37488 1.40162 1.42804 1.51764 1.53217 2.13649 2.48064 2.75557 2.88787 3.19803 3.34554 3.59617 3.80620 3.85950 3.91758 4.02703 4.15578 4.25634 4.41577 4.48035 4.50732 4.62886 4.64311 4.73776 4.76335 4.79588 4.81767 4.88515 4.97511 5.00647 5.04384 5.08241 5.22376 5.24103 5.25963 5.35647 5.43169 5.61920 5.65363 5.68896 5.79033 6.43127 6.68082 7.11824 7.38277 7.86563 8.37119 9.13631 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004434 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.048465 B = 6313.946075 C = 7021.937600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.037 4.037 3 Si 0.952 3.048 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.044 0.956 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.166 3.834 14 H 0.043 0.957 15 N -0.709 5.709 16 C 0.526 3.474 17 O -0.587 6.587 18 C -0.141 4.141 19 H 0.156 0.844 20 C -0.084 4.084 21 C -0.228 4.228 22 C -0.098 4.098 23 C -0.142 4.142 24 C -0.137 4.137 25 C 0.158 3.842 26 H 0.252 0.748 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.416 0.584 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -18.780 -11.007 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.233 4.233 3 Si 0.781 3.219 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.062 0.938 9 N -0.322 5.322 10 C 0.028 3.972 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.061 3.939 14 H 0.061 0.939 15 N -0.361 5.361 16 C 0.313 3.687 17 O -0.467 6.467 18 C -0.162 4.162 19 H 0.174 0.826 20 C -0.121 4.121 21 C -0.229 4.229 22 C -0.135 4.135 23 C -0.179 4.179 24 C -0.179 4.179 25 C 0.029 3.971 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.254 0.746 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.653 -17.901 -10.748 22.601 hybrid contribution 0.201 1.325 0.435 1.409 sum 8.854 -16.576 -10.313 21.436 Atomic orbital electron populations 1.70118 1.06210 1.25857 1.54334 1.25570 0.95862 1.00793 1.01106 0.85491 0.78319 0.80646 0.77474 1.21364 1.21223 1.20330 1.19224 0.93022 0.87302 1.39668 0.93803 1.44129 1.41633 1.01701 1.44762 1.20246 0.89102 1.00546 0.87286 1.20827 1.00420 0.96093 0.99114 1.21255 0.93428 0.96831 1.02749 1.20791 0.91831 0.89356 0.91893 0.93891 1.46187 1.08574 1.20208 1.61143 1.20467 0.82547 0.87779 0.77859 1.90719 1.70230 1.31919 1.53847 1.22056 0.93776 0.98767 1.01618 0.82625 1.22759 0.96836 1.04008 0.88538 1.21442 0.87237 1.09811 1.04401 1.22836 0.93190 0.94115 1.03330 1.22558 0.99358 0.94987 1.01028 1.23129 0.98977 1.00254 0.95534 1.20375 0.95284 0.87316 0.94119 0.93865 0.91699 0.95458 0.95101 0.91192 0.88474 0.89886 0.74626 0.84070 0.89752 0.87742 0.86003 0.88418 0.90897 0.89873 0.96119 0.96295 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.69 11.25 21.65 0.24 -54.44 16 2 C -0.04 -2.13 4.93 84.86 0.42 -1.72 16 3 Si 0.95 47.25 29.60 68.60 2.03 49.29 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.26 -15.28 9.54 84.03 0.80 -14.48 16 8 H 0.04 2.67 7.90 -2.91 -0.02 2.65 16 9 N -0.60 -30.80 2.56 -707.82 -1.81 -32.61 16 10 C 0.15 7.10 5.37 83.58 0.45 7.55 16 11 C -0.13 -4.70 5.20 28.36 0.15 -4.56 16 12 C -0.10 -3.07 5.34 29.51 0.16 -2.91 16 13 C 0.17 5.70 2.23 44.69 0.10 5.80 16 14 H 0.04 1.94 6.25 -2.39 -0.01 1.93 16 15 N -0.71 -18.58 4.96 -443.94 -2.20 -20.78 16 16 C 0.53 15.97 7.57 87.66 0.66 16.64 16 17 O -0.59 -24.82 15.90 -3.05 -0.05 -24.87 16 18 C -0.14 -2.88 6.19 -11.54 -0.07 -2.96 16 19 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 20 C -0.08 -1.46 10.24 30.61 0.31 -1.14 16 21 C -0.23 -4.83 5.06 -52.18 -0.26 -5.10 16 22 C -0.10 -1.56 10.53 30.59 0.32 -1.24 16 23 C -0.14 -3.36 10.16 30.59 0.31 -3.05 16 24 C -0.14 -5.13 5.99 31.87 0.19 -4.94 16 25 C 0.16 6.80 5.17 87.59 0.45 7.26 16 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.06 3.52 5.65 -2.39 -0.01 3.51 16 28 H 0.03 1.23 8.12 -2.38 -0.02 1.21 16 29 H 0.03 1.32 6.93 -2.39 -0.02 1.31 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 2.13 7.86 -2.39 -0.02 2.11 16 32 H 0.08 2.31 6.29 -2.39 -0.02 2.30 16 33 H 0.42 7.10 8.49 -92.71 -0.79 6.31 16 34 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 2.54 8.12 -2.38 -0.02 2.52 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 43 H 0.05 1.92 6.89 -2.38 -0.02 1.91 16 Total: -1.00 -74.74 341.19 2.42 -72.32 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.21 Total: 15.95 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 3.99 Total: -4.85 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.77 Total: -107.84 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.29 kcal Total: -74.74 2.42 -72.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052743807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.295 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds