Wall clock time and date at job start Tue Mar 31 2020 00:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46958 * 299.99947 * 3 2 1 6 6 H 1.48493 * 109.47114 * 59.99456 * 3 2 1 7 7 C 1.38809 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00355 * 160.40548 * 7 2 1 9 9 N 1.36939 * 119.99798 * 340.40897 * 7 2 1 10 10 C 1.43427 * 120.54337 * 156.68485 * 9 7 2 11 11 C 1.54899 * 116.08323 * 271.59272 * 10 9 7 12 12 C 1.54844 * 110.14066 * 318.63625 * 11 10 9 13 13 C 1.50298 * 110.69198 * 321.13172 * 12 11 10 14 14 H 1.09009 * 110.38672 * 338.84241 * 13 12 11 15 15 N 1.46504 * 110.20124 * 216.73476 * 13 12 11 16 16 C 1.34775 * 120.00537 * 159.14869 * 15 13 12 17 17 O 1.21282 * 119.99591 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99981 * 179.97438 * 16 15 13 19 19 H 1.09003 * 115.55405 * 34.33678 * 18 16 15 20 20 C 1.53003 * 117.49921 * 248.62254 * 18 16 15 21 21 C 1.52996 * 117.49925 * 180.02562 * 18 16 15 22 22 C 1.52997 * 138.58587 * 336.60399 * 21 18 16 23 23 C 1.52996 * 138.59011 * 238.38900 * 21 18 16 24 24 C 1.52530 * 105.33266 * 97.83706 * 13 12 11 25 25 C 1.46235 * 114.15906 * 270.40804 * 24 13 12 26 26 H 0.96996 * 119.99871 * 0.02562 * 1 2 3 27 27 H 1.09005 * 108.15947 * 33.30484 * 10 9 7 28 28 H 1.08997 * 108.16453 * 149.86973 * 10 9 7 29 29 H 1.09002 * 109.35921 * 78.83804 * 11 10 9 30 30 H 1.08993 * 109.36300 * 198.56454 * 11 10 9 31 31 H 1.09002 * 109.20416 * 81.47137 * 12 11 10 32 32 H 1.08994 * 109.21136 * 200.82769 * 12 11 10 33 33 H 0.97004 * 119.99291 * 339.15524 * 15 13 12 34 34 H 1.08995 * 117.49917 * 0.02562 * 20 18 16 35 35 H 1.09002 * 117.49747 * 145.02505 * 20 18 16 36 36 H 1.09000 * 117.50010 * 336.58525 * 22 21 18 37 37 H 1.09000 * 117.50270 * 121.61726 * 22 21 18 38 38 H 1.09006 * 117.49464 * 238.37709 * 23 21 18 39 39 H 1.09000 * 117.49938 * 23.37398 * 23 21 18 40 40 H 1.09004 * 108.52369 * 149.24417 * 24 13 12 41 41 H 1.08997 * 108.52107 * 31.57330 * 24 13 12 42 42 H 1.08999 * 109.84665 * 177.99465 * 25 24 13 43 43 H 1.09004 * 109.84706 * 298.97253 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0434 -1.2292 -0.3131 9 7 1.3852 -2.3535 0.3987 10 6 1.8645 -3.6322 -0.0398 11 6 1.2865 -4.1535 -1.3791 12 6 -0.2321 -3.8607 -1.4542 13 6 -0.8806 -4.0719 -0.1149 14 1 -0.2645 -4.7212 0.5072 15 7 -2.2167 -4.6485 -0.2850 16 6 -2.8043 -5.3009 0.7375 17 8 -2.2272 -5.4103 1.7986 18 6 -4.1788 -5.8935 0.5626 19 1 -4.3994 -6.2843 -0.4308 20 6 -5.3290 -5.2519 1.3413 21 6 -4.7920 -6.6213 1.7605 22 6 -4.3260 -7.3300 3.0338 23 6 -5.3338 -8.0100 2.1049 24 6 -0.9804 -2.6833 0.5083 25 6 0.1863 -2.2979 1.3013 26 1 -0.4850 0.8400 -0.0004 27 1 2.9486 -3.5733 -0.1378 28 1 1.6383 -4.3641 0.7356 29 1 1.7915 -3.6575 -2.2080 30 1 1.4490 -5.2290 -1.4485 31 1 -0.3830 -2.8278 -1.7682 32 1 -0.6903 -4.5279 -2.1843 33 1 -2.6783 -4.5606 -1.1336 34 1 -5.0916 -4.4010 1.9797 35 1 -6.3066 -5.2204 0.8602 36 1 -3.3095 -7.7233 3.0477 37 1 -4.6961 -6.9495 3.9859 38 1 -6.3671 -8.0767 2.4458 39 1 -4.9807 -8.8504 1.5074 40 1 -1.8606 -2.6544 1.1507 41 1 -1.1123 -1.9538 -0.2908 42 1 0.0566 -1.2849 1.6823 43 1 0.3154 -2.9925 2.1313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052743808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:13 Heat of formation + Delta-G solvation = 50.225405 kcal Electronic energy + Delta-G solvation = -22465.504413 eV Core-core repulsion = 19320.471191 eV Total energy + Delta-G solvation = -3145.033221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.90287 -38.22349 -36.94552 -34.46414 -32.78149 -32.32107 -30.84204 -30.36279 -26.21720 -24.68007 -23.08196 -22.99714 -22.46149 -20.41182 -19.91071 -19.39001 -18.69293 -16.81887 -16.62372 -15.77475 -15.10076 -14.97279 -14.79742 -14.44790 -14.04488 -13.80171 -13.69786 -13.22487 -12.88854 -12.37676 -12.03950 -11.79775 -11.69692 -11.55184 -11.37974 -11.19496 -10.76176 -10.74051 -10.33197 -10.25122 -10.15884 -10.13323 -10.05425 -9.93108 -9.78141 -9.49814 -9.33407 -9.20683 -8.59805 -8.27070 -6.68350 -5.76243 -3.15115 2.76190 3.28963 3.38983 3.47747 3.49757 3.70551 3.88129 4.25511 4.53463 4.73262 4.78905 5.13210 5.35819 5.38700 5.43377 5.49789 5.51583 5.57173 5.60349 5.66149 5.72932 5.80507 5.87529 5.91939 6.10810 6.16081 6.30947 6.35276 6.51122 6.60671 6.71443 6.88811 6.93076 6.96477 7.12651 7.16800 7.34107 7.63426 7.77394 7.93264 8.01027 8.45888 8.63254 9.22162 9.90199 10.43934 11.30943 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.004171 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.825252 B = 6712.086641 C = 7068.256727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.154 3.846 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.082 0.918 15 N -0.717 5.717 16 C 0.536 3.464 17 O -0.535 6.535 18 C -0.140 4.140 19 H 0.120 0.880 20 C -0.101 4.101 21 C -0.201 4.201 22 C -0.113 4.113 23 C -0.133 4.133 24 C -0.131 4.131 25 C 0.169 3.831 26 H 0.251 0.749 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.394 0.606 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -12.506 -0.661 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.044 3.956 14 H 0.100 0.900 15 N -0.367 5.367 16 C 0.321 3.679 17 O -0.411 6.411 18 C -0.161 4.161 19 H 0.138 0.862 20 C -0.138 4.138 21 C -0.202 4.202 22 C -0.149 4.149 23 C -0.169 4.169 24 C -0.170 4.170 25 C 0.045 3.955 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.227 0.773 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -9.978 -12.412 0.129 15.926 hybrid contribution 0.077 0.999 -0.786 1.273 sum -9.901 -11.413 -0.657 15.124 Atomic orbital electron populations 1.69978 1.05080 1.25000 1.54553 1.24882 0.95222 0.98139 1.01421 0.86278 0.79432 0.84253 0.77128 1.20438 1.21978 1.21717 1.19266 0.93630 0.85404 1.39242 0.91478 1.44278 1.33756 1.00880 1.52071 1.20427 0.96421 0.88243 0.92407 1.22832 0.95010 0.98384 1.01910 1.21731 0.96011 1.02372 0.94908 1.20528 0.81083 0.96063 0.97961 0.90002 1.46235 1.19506 1.56100 1.14855 1.19567 0.86051 0.78164 0.84095 1.90690 1.64783 1.59141 1.26529 1.22017 0.93146 1.04111 0.96858 0.86225 1.22643 0.96243 0.94237 1.00711 1.21117 1.06250 0.93730 0.99070 1.22575 0.99402 1.00397 0.92569 1.22751 0.99173 0.92502 1.02508 1.21319 0.98747 0.94665 1.02311 1.20094 0.84979 1.00480 0.89940 0.93891 0.94897 0.95306 0.92659 0.93749 0.90096 0.94156 0.77314 0.87969 0.87804 0.88192 0.88621 0.88529 0.88706 0.95297 0.88063 0.89167 0.97303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 9.43 55.49 0.52 -24.28 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.50 29.60 -169.99 -5.03 16.47 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.63 9.63 -15.06 -0.14 -6.77 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.61 2.60 -175.09 -0.46 -15.07 16 10 C 0.15 3.30 5.17 -4.67 -0.02 3.28 16 11 C -0.14 -2.62 6.41 -24.76 -0.16 -2.77 16 12 C -0.11 -2.07 5.31 -27.11 -0.14 -2.21 16 13 C 0.15 2.80 2.18 -69.52 -0.15 2.65 16 14 H 0.08 1.73 5.82 -51.92 -0.30 1.43 16 15 N -0.72 -11.38 5.01 -55.36 -0.28 -11.66 16 16 C 0.54 8.83 7.47 -10.99 -0.08 8.75 16 17 O -0.53 -10.93 15.97 5.56 0.09 -10.84 16 18 C -0.14 -1.74 6.19 -91.78 -0.57 -2.31 16 19 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.10 -1.13 10.23 -26.76 -0.27 -1.40 16 21 C -0.20 -2.42 5.05 -154.54 -0.78 -3.20 16 22 C -0.11 -1.32 10.16 -26.73 -0.27 -1.59 16 23 C -0.13 -1.25 10.53 -26.73 -0.28 -1.54 16 24 C -0.13 -2.91 4.74 -30.19 -0.14 -3.06 16 25 C 0.17 4.14 5.24 -5.20 -0.03 4.11 16 26 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 28 H 0.03 0.60 6.88 -51.93 -0.36 0.24 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.73 6.82 -51.93 -0.35 1.38 16 32 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 33 H 0.39 5.07 8.44 -40.82 -0.34 4.73 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.65 7.90 -51.93 -0.41 0.24 16 41 H 0.10 2.51 5.28 -51.93 -0.27 2.23 16 42 H 0.09 2.44 6.05 -51.93 -0.31 2.13 16 43 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -30.06 337.73 -10.15 -40.21 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.95 Total: 6.20 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.14 Total: -6.12 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.21 Total: -51.01 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.06 -10.15 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052743808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.440 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds