Wall clock time and date at job start Tue Mar 31 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46958 * 299.99947 * 3 2 1 6 6 H 1.48493 * 109.47114 * 59.99456 * 3 2 1 7 7 C 1.38809 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00355 * 160.40548 * 7 2 1 9 9 N 1.36939 * 119.99798 * 340.40897 * 7 2 1 10 10 C 1.43427 * 120.54337 * 156.68485 * 9 7 2 11 11 C 1.54899 * 116.08323 * 271.59272 * 10 9 7 12 12 C 1.54844 * 110.14066 * 318.63625 * 11 10 9 13 13 C 1.50298 * 110.69198 * 321.13172 * 12 11 10 14 14 H 1.09009 * 110.38672 * 338.84241 * 13 12 11 15 15 N 1.46504 * 110.20124 * 216.73476 * 13 12 11 16 16 C 1.34775 * 120.00537 * 159.14869 * 15 13 12 17 17 O 1.21282 * 119.99591 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99981 * 179.97438 * 16 15 13 19 19 H 1.09003 * 115.55405 * 34.33678 * 18 16 15 20 20 C 1.53003 * 117.49921 * 248.62254 * 18 16 15 21 21 C 1.52996 * 117.49925 * 180.02562 * 18 16 15 22 22 C 1.52997 * 138.58587 * 336.60399 * 21 18 16 23 23 C 1.52996 * 138.59011 * 238.38900 * 21 18 16 24 24 C 1.52530 * 105.33266 * 97.83706 * 13 12 11 25 25 C 1.46235 * 114.15906 * 270.40804 * 24 13 12 26 26 H 0.96996 * 119.99871 * 0.02562 * 1 2 3 27 27 H 1.09005 * 108.15947 * 33.30484 * 10 9 7 28 28 H 1.08997 * 108.16453 * 149.86973 * 10 9 7 29 29 H 1.09002 * 109.35921 * 78.83804 * 11 10 9 30 30 H 1.08993 * 109.36300 * 198.56454 * 11 10 9 31 31 H 1.09002 * 109.20416 * 81.47137 * 12 11 10 32 32 H 1.08994 * 109.21136 * 200.82769 * 12 11 10 33 33 H 0.97004 * 119.99291 * 339.15524 * 15 13 12 34 34 H 1.08995 * 117.49917 * 0.02562 * 20 18 16 35 35 H 1.09002 * 117.49747 * 145.02505 * 20 18 16 36 36 H 1.09000 * 117.50010 * 336.58525 * 22 21 18 37 37 H 1.09000 * 117.50270 * 121.61726 * 22 21 18 38 38 H 1.09006 * 117.49464 * 238.37709 * 23 21 18 39 39 H 1.09000 * 117.49938 * 23.37398 * 23 21 18 40 40 H 1.09004 * 108.52369 * 149.24417 * 24 13 12 41 41 H 1.08997 * 108.52107 * 31.57330 * 24 13 12 42 42 H 1.08999 * 109.84665 * 177.99465 * 25 24 13 43 43 H 1.09004 * 109.84706 * 298.97253 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0434 -1.2292 -0.3131 9 7 1.3852 -2.3535 0.3987 10 6 1.8645 -3.6322 -0.0398 11 6 1.2865 -4.1535 -1.3791 12 6 -0.2321 -3.8607 -1.4542 13 6 -0.8806 -4.0719 -0.1149 14 1 -0.2645 -4.7212 0.5072 15 7 -2.2167 -4.6485 -0.2850 16 6 -2.8043 -5.3009 0.7375 17 8 -2.2272 -5.4103 1.7986 18 6 -4.1788 -5.8935 0.5626 19 1 -4.3994 -6.2843 -0.4308 20 6 -5.3290 -5.2519 1.3413 21 6 -4.7920 -6.6213 1.7605 22 6 -4.3260 -7.3300 3.0338 23 6 -5.3338 -8.0100 2.1049 24 6 -0.9804 -2.6833 0.5083 25 6 0.1863 -2.2979 1.3013 26 1 -0.4850 0.8400 -0.0004 27 1 2.9486 -3.5733 -0.1378 28 1 1.6383 -4.3641 0.7356 29 1 1.7915 -3.6575 -2.2080 30 1 1.4490 -5.2290 -1.4485 31 1 -0.3830 -2.8278 -1.7682 32 1 -0.6903 -4.5279 -2.1843 33 1 -2.6783 -4.5606 -1.1336 34 1 -5.0916 -4.4010 1.9797 35 1 -6.3066 -5.2204 0.8602 36 1 -3.3095 -7.7233 3.0477 37 1 -4.6961 -6.9495 3.9859 38 1 -6.3671 -8.0767 2.4458 39 1 -4.9807 -8.8504 1.5074 40 1 -1.8606 -2.6544 1.1507 41 1 -1.1123 -1.9538 -0.2908 42 1 0.0566 -1.2849 1.6823 43 1 0.3154 -2.9925 2.1313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052743808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:12 Heat of formation + Delta-G solvation = 33.061618 kcal Electronic energy + Delta-G solvation = -22466.248690 eV Core-core repulsion = 19320.471191 eV Total energy + Delta-G solvation = -3145.777499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22381 -39.64424 -38.21265 -36.14097 -34.23945 -33.57166 -32.63798 -32.11228 -28.02903 -26.17234 -24.94734 -24.37431 -23.26219 -21.86683 -21.41857 -20.87821 -19.87239 -18.60187 -18.02025 -17.20310 -16.83949 -16.04894 -15.87857 -15.79238 -15.62451 -15.49966 -15.33272 -14.92109 -14.50376 -13.72146 -13.56833 -13.44310 -13.25618 -13.06630 -12.67505 -12.63943 -12.55350 -12.34475 -12.05772 -11.87805 -11.72982 -11.67270 -11.22783 -11.15175 -11.06036 -11.04045 -10.91248 -10.66247 -10.50674 -9.89760 -8.68552 -7.82723 -5.24016 1.46538 1.50549 1.54741 1.59195 2.13175 2.54177 2.77194 2.91468 3.30763 3.36484 3.56403 3.81879 3.87772 4.01272 4.10250 4.15901 4.25756 4.50334 4.52150 4.59934 4.65413 4.67627 4.76544 4.78538 4.81997 4.84708 4.92714 5.03057 5.04554 5.08142 5.19472 5.21455 5.28864 5.31300 5.36425 5.51849 5.62278 5.68777 5.73780 6.05155 6.41243 6.67643 7.15881 7.35998 7.88805 8.41745 9.22255 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.004171 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.825252 B = 6712.086641 C = 7068.256727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.042 4.042 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.103 4.103 13 C 0.162 3.838 14 H 0.065 0.935 15 N -0.708 5.708 16 C 0.530 3.470 17 O -0.582 6.582 18 C -0.143 4.143 19 H 0.154 0.846 20 C -0.091 4.091 21 C -0.224 4.224 22 C -0.138 4.138 23 C -0.099 4.099 24 C -0.114 4.114 25 C 0.174 3.826 26 H 0.247 0.753 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.015 0.985 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 -14.100 -2.172 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.238 4.238 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.323 5.323 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.058 3.942 14 H 0.083 0.917 15 N -0.358 5.358 16 C 0.318 3.682 17 O -0.461 6.461 18 C -0.164 4.164 19 H 0.172 0.828 20 C -0.128 4.128 21 C -0.225 4.225 22 C -0.175 4.175 23 C -0.135 4.135 24 C -0.154 4.154 25 C 0.050 3.950 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.099 0.901 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.034 0.966 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -11.282 -14.029 -1.420 18.058 hybrid contribution 0.517 1.471 -0.236 1.577 sum -10.766 -12.558 -1.656 16.623 Atomic orbital electron populations 1.70121 1.06016 1.25161 1.55071 1.25524 0.95992 1.00665 1.01597 0.85348 0.78611 0.80708 0.76551 1.19738 1.21929 1.22218 1.19463 0.93744 0.86524 1.39277 0.91716 1.44325 1.33746 1.01654 1.52529 1.20570 0.96554 0.86859 0.94105 1.22726 0.94839 1.00153 0.99611 1.21575 0.96126 1.01312 0.95097 1.20106 0.82750 0.93630 0.97761 0.91726 1.46063 1.18427 1.55510 1.15848 1.20365 0.87358 0.77348 0.83158 1.90671 1.66299 1.60826 1.28352 1.22033 0.90649 1.04849 0.98845 0.82845 1.22723 0.97092 0.93137 0.99894 1.21402 1.06836 0.95457 0.98800 1.22595 0.99408 1.02177 0.93271 1.22862 0.99550 0.91038 1.00054 1.21084 0.97025 0.96365 1.00896 1.19904 0.86273 0.98514 0.90294 0.94360 0.94809 0.95051 0.92902 0.90536 0.93241 0.90401 0.75187 0.90055 0.84402 0.90250 0.88396 0.86167 0.87486 0.96602 0.90310 0.92298 0.97717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.85 9.43 21.65 0.20 -51.65 16 2 C -0.04 -2.30 4.91 84.86 0.42 -1.88 16 3 Si 0.96 44.80 29.60 68.60 2.03 46.83 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.26 -14.23 9.63 84.03 0.81 -13.43 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.60 -30.40 2.60 -707.85 -1.84 -32.24 16 10 C 0.15 6.26 5.17 87.60 0.45 6.71 16 11 C -0.13 -4.72 6.41 31.87 0.20 -4.51 16 12 C -0.10 -3.64 5.31 30.35 0.16 -3.48 16 13 C 0.16 6.13 2.18 43.96 0.10 6.22 16 14 H 0.06 2.72 5.82 -2.38 -0.01 2.71 16 15 N -0.71 -21.55 5.01 -447.44 -2.24 -23.79 16 16 C 0.53 17.07 7.47 87.66 0.65 17.73 16 17 O -0.58 -24.22 15.97 -3.04 -0.05 -24.27 16 18 C -0.14 -3.23 6.19 -11.54 -0.07 -3.30 16 19 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 20 C -0.09 -1.84 10.23 30.58 0.31 -1.53 16 21 C -0.22 -4.94 5.05 -52.20 -0.26 -5.20 16 22 C -0.14 -3.15 10.16 30.60 0.31 -2.83 16 23 C -0.10 -1.57 10.53 30.60 0.32 -1.24 16 24 C -0.11 -5.23 4.74 28.36 0.13 -5.09 16 25 C 0.17 8.88 5.24 83.58 0.44 9.32 16 26 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.03 1.41 7.99 -2.38 -0.02 1.39 16 28 H 0.03 1.30 6.88 -2.39 -0.02 1.29 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 2.10 6.82 -2.39 -0.02 2.08 16 32 H 0.08 2.18 7.81 -2.39 -0.02 2.16 16 33 H 0.41 9.59 8.44 -92.71 -0.78 8.81 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.02 0.73 7.90 -2.38 -0.02 0.71 16 41 H 0.08 4.02 5.28 -2.39 -0.01 4.01 16 42 H 0.06 3.35 6.05 -2.39 -0.01 3.33 16 43 H 0.00 0.24 8.12 -2.38 -0.02 0.22 16 Total: -1.00 -67.32 337.73 2.30 -65.03 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.22 Total: 22.61 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 3.98 Total: -2.52 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.88 Total: -107.68 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -67.32 2.30 -65.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052743808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.087 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds