Wall clock time and date at job start Mon Mar 30 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48489 * 109.47031 * 239.99624 * 3 2 1 5 5 H 1.48498 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47001 * 119.99247 * 3 2 1 7 7 C 1.38811 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.58996 * 0.02562 * 9 7 2 11 11 C 1.54597 * 107.36670 * 180.66450 * 10 9 7 12 12 C 1.53656 * 102.73161 * 20.75459 * 11 10 9 13 13 C 1.52374 * 116.39644 * 197.07935 * 12 11 10 14 14 N 1.47894 * 85.58872 * 218.64753 * 13 12 11 15 15 C 1.34779 * 134.33969 * 203.48396 * 14 13 12 16 16 O 1.21285 * 119.99581 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00096 * 0.02562 * 15 14 13 18 18 C 1.54262 * 110.03180 * 297.90526 * 17 15 14 19 19 C 1.54962 * 104.16186 * 217.13877 * 18 17 15 20 20 C 1.54893 * 102.77805 * 37.88675 * 19 18 17 21 21 C 1.53872 * 110.03094 * 180.68947 * 17 15 14 22 22 C 1.47889 * 91.31509 * 23.48730 * 14 13 12 23 23 C 1.47729 * 125.58517 * 179.71795 * 9 7 2 24 24 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.86551 * 300.10816 * 10 9 7 26 26 H 1.08999 * 109.86401 * 61.07922 * 10 9 7 27 27 H 1.08999 * 110.75884 * 139.05990 * 11 10 9 28 28 H 1.09002 * 110.75757 * 262.44359 * 11 10 9 29 29 H 1.08995 * 113.85561 * 332.81627 * 13 12 11 30 30 H 1.09003 * 113.85353 * 104.48465 * 13 12 11 31 31 H 1.09001 * 110.01783 * 59.29737 * 17 15 14 32 32 H 1.09002 * 110.48751 * 335.78675 * 18 17 15 33 33 H 1.09001 * 110.48984 * 98.42829 * 18 17 15 34 34 H 1.08998 * 110.72242 * 279.57446 * 19 18 17 35 35 H 1.09000 * 110.92605 * 156.29489 * 19 18 17 36 36 H 1.09000 * 110.49055 * 203.40870 * 20 19 18 37 37 H 1.09001 * 110.60086 * 80.81928 * 20 19 18 38 38 H 1.08999 * 110.03156 * 238.57149 * 21 17 15 39 39 H 1.09005 * 110.03187 * 359.94774 * 21 17 15 40 40 H 1.09000 * 113.85076 * 222.34692 * 22 14 13 41 41 H 1.08996 * 113.97057 * 90.69257 * 22 14 13 42 42 H 1.09007 * 110.39933 * 276.60127 * 23 9 7 43 43 H 1.08995 * 110.40116 * 39.00987 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1389 -2.5313 -0.0005 11 6 -0.4546 -4.0446 0.0170 12 6 0.8472 -4.6558 0.5580 13 6 1.0381 -6.1508 0.3337 14 7 1.6262 -6.1634 1.6906 15 6 2.4863 -6.9752 2.3370 16 8 2.8026 -6.7344 3.4828 17 6 3.0558 -8.1813 1.6356 18 6 1.9214 -9.1532 1.2505 19 6 2.5358 -10.5589 1.4698 20 6 3.3931 -10.3630 2.7448 21 6 3.9914 -8.9501 2.5850 22 6 0.8950 -4.9309 2.0559 23 6 1.9360 -3.7333 -0.0048 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5583 -2.0551 0.8858 26 1 -0.5551 -2.0743 -0.8984 27 1 -1.2884 -4.2576 0.6859 28 1 -0.6628 -4.4075 -0.9895 29 1 0.1043 -6.7072 0.2528 30 1 1.7490 -6.3907 -0.4571 31 1 3.6009 -7.8716 0.7440 32 1 1.0583 -9.0088 1.9003 33 1 1.6408 -9.0174 0.2061 34 1 3.1614 -10.8426 0.6235 35 1 1.7567 -11.3022 1.6386 36 1 4.1856 -11.1100 2.7902 37 1 2.7699 -10.4146 3.6377 38 1 4.9904 -9.0142 2.1537 39 1 4.0342 -8.4502 3.5528 40 1 1.4935 -4.2133 2.6170 41 1 -0.0828 -5.1120 2.5022 42 1 2.1960 -4.0285 -1.0215 43 1 2.8183 -3.7526 0.6347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072383925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:56 Heat of formation + Delta-G solvation = 14.488424 kcal Electronic energy + Delta-G solvation = -22297.563396 eV Core-core repulsion = 19150.980503 eV Total energy + Delta-G solvation = -3146.582893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65762 -38.96630 -36.86286 -35.56802 -32.24346 -30.24099 -29.23230 -28.83073 -27.95132 -26.08015 -25.74130 -23.66886 -21.34505 -20.81150 -20.26389 -18.75660 -18.24296 -17.23957 -16.80289 -16.05501 -15.58295 -15.24045 -14.81081 -14.55362 -14.21112 -13.72666 -13.54145 -13.45759 -12.94029 -12.58417 -12.32899 -11.87939 -11.78462 -11.70742 -11.42701 -11.31173 -11.24640 -11.07370 -10.95583 -10.92673 -10.73631 -10.63126 -10.39963 -10.15934 -10.11154 -9.85790 -9.66773 -9.36631 -8.59596 -8.49187 -6.84319 -5.71491 -3.04971 2.78556 2.96368 3.41550 3.45874 3.46845 4.28969 4.39946 4.47530 4.49397 4.68905 4.87400 5.01107 5.21535 5.23521 5.27354 5.31320 5.43882 5.48663 5.49035 5.54218 5.55362 5.65684 5.69672 5.71908 5.73884 5.84651 5.97922 5.99766 6.07335 6.12722 6.17879 6.22470 6.28810 6.46794 6.51493 6.66792 6.71375 7.54942 7.60204 7.81977 7.90357 8.25121 8.32155 9.21852 9.81531 10.46870 11.40086 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.003803 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.864781 B = 7360.543285 C = 7745.706497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.104 4.104 13 C 0.116 3.884 14 N -0.638 5.638 15 C 0.537 3.463 16 O -0.547 6.547 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.120 4.120 22 C 0.128 3.872 23 C 0.162 3.838 24 H 0.253 0.747 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.024 0.976 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -19.744 0.041 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.170 4.170 12 C -0.106 4.106 13 C -0.007 4.007 14 N -0.373 5.373 15 C 0.327 3.673 16 O -0.425 6.425 17 C -0.130 4.130 18 C -0.149 4.149 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.158 4.158 22 C 0.007 3.993 23 C 0.036 3.964 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.041 0.959 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.624 -19.488 0.767 19.571 hybrid contribution 0.381 0.941 -0.102 1.020 sum 2.005 -18.547 0.665 18.667 Atomic orbital electron populations 1.69951 1.04850 1.25142 1.57047 1.24784 0.95725 0.97628 1.02187 0.86196 0.78465 0.83174 0.77920 1.21185 1.21592 1.21157 1.19004 0.90414 0.82379 1.43916 0.90554 1.44545 1.01638 0.99664 1.87269 1.21207 0.84235 0.87959 1.01230 1.22669 0.94756 0.99736 0.99850 1.22476 0.99617 0.93328 0.95187 1.23073 0.97524 0.95942 0.84207 1.50215 1.43760 1.27366 1.15972 1.20239 0.78404 0.82749 0.85905 1.90655 1.60870 1.73084 1.17935 1.21873 0.97712 0.93625 0.99740 1.22332 0.97037 0.93973 1.01596 1.22512 0.99097 0.96419 0.98080 1.22357 0.99151 0.96606 0.98000 1.22170 0.97592 0.95002 1.00994 1.22938 0.95720 0.84049 0.96630 1.21036 0.93161 0.85512 0.96718 0.93714 0.93554 0.93765 0.91778 0.91736 0.89688 0.90103 0.88619 0.91355 0.90899 0.91292 0.91451 0.91628 0.91628 0.91529 0.89243 0.89690 0.90049 0.95868 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.30 55.49 0.57 -26.24 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.12 3.41 -170.50 -0.58 -15.70 16 10 C 0.18 4.14 5.39 -2.86 -0.02 4.13 16 11 C -0.13 -2.21 6.36 -25.55 -0.16 -2.37 16 12 C -0.10 -1.68 0.99 -154.85 -0.15 -1.83 16 13 C 0.12 1.42 7.46 -3.60 -0.03 1.39 16 14 N -0.64 -9.46 3.59 -186.89 -0.67 -10.13 16 15 C 0.54 8.34 7.23 -10.98 -0.08 8.26 16 16 O -0.55 -10.61 15.93 5.55 0.09 -10.52 16 17 C -0.11 -1.24 3.10 -90.66 -0.28 -1.52 16 18 C -0.11 -1.03 5.77 -25.03 -0.14 -1.17 16 19 C -0.12 -0.97 6.91 -24.70 -0.17 -1.14 16 20 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 21 C -0.12 -1.32 6.40 -25.61 -0.16 -1.48 16 22 C 0.13 2.10 8.14 -3.60 -0.03 2.07 16 23 C 0.16 3.25 6.63 -3.16 -0.02 3.23 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.05 1.20 7.40 -51.93 -0.38 0.82 16 26 H 0.04 1.14 7.47 -51.93 -0.39 0.76 16 27 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.21 6.39 -51.93 -0.33 0.88 16 40 H 0.08 1.61 8.12 -51.93 -0.42 1.19 16 41 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 LS Contribution 338.09 15.07 5.10 5.10 Total: -1.00 -31.91 338.09 -9.57 -41.48 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.38 Total: -2.60 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.67 Total: 1.47 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.68 Total: -52.06 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.91 -9.57 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072383925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.972 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds