Wall clock time and date at job start Mon Mar 30 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48489 * 109.47031 * 239.99624 * 3 2 1 5 5 H 1.48498 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47001 * 119.99247 * 3 2 1 7 7 C 1.38811 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.58996 * 0.02562 * 9 7 2 11 11 C 1.54597 * 107.36670 * 180.66450 * 10 9 7 12 12 C 1.53656 * 102.73161 * 20.75459 * 11 10 9 13 13 C 1.52374 * 116.39644 * 197.07935 * 12 11 10 14 14 N 1.47894 * 85.58872 * 218.64753 * 13 12 11 15 15 C 1.34779 * 134.33969 * 203.48396 * 14 13 12 16 16 O 1.21285 * 119.99581 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00096 * 0.02562 * 15 14 13 18 18 C 1.54262 * 110.03180 * 297.90526 * 17 15 14 19 19 C 1.54962 * 104.16186 * 217.13877 * 18 17 15 20 20 C 1.54893 * 102.77805 * 37.88675 * 19 18 17 21 21 C 1.53872 * 110.03094 * 180.68947 * 17 15 14 22 22 C 1.47889 * 91.31509 * 23.48730 * 14 13 12 23 23 C 1.47729 * 125.58517 * 179.71795 * 9 7 2 24 24 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.86551 * 300.10816 * 10 9 7 26 26 H 1.08999 * 109.86401 * 61.07922 * 10 9 7 27 27 H 1.08999 * 110.75884 * 139.05990 * 11 10 9 28 28 H 1.09002 * 110.75757 * 262.44359 * 11 10 9 29 29 H 1.08995 * 113.85561 * 332.81627 * 13 12 11 30 30 H 1.09003 * 113.85353 * 104.48465 * 13 12 11 31 31 H 1.09001 * 110.01783 * 59.29737 * 17 15 14 32 32 H 1.09002 * 110.48751 * 335.78675 * 18 17 15 33 33 H 1.09001 * 110.48984 * 98.42829 * 18 17 15 34 34 H 1.08998 * 110.72242 * 279.57446 * 19 18 17 35 35 H 1.09000 * 110.92605 * 156.29489 * 19 18 17 36 36 H 1.09000 * 110.49055 * 203.40870 * 20 19 18 37 37 H 1.09001 * 110.60086 * 80.81928 * 20 19 18 38 38 H 1.08999 * 110.03156 * 238.57149 * 21 17 15 39 39 H 1.09005 * 110.03187 * 359.94774 * 21 17 15 40 40 H 1.09000 * 113.85076 * 222.34692 * 22 14 13 41 41 H 1.08996 * 113.97057 * 90.69257 * 22 14 13 42 42 H 1.09007 * 110.39933 * 276.60127 * 23 9 7 43 43 H 1.08995 * 110.40116 * 39.00987 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1389 -2.5313 -0.0005 11 6 -0.4546 -4.0446 0.0170 12 6 0.8472 -4.6558 0.5580 13 6 1.0381 -6.1508 0.3337 14 7 1.6262 -6.1634 1.6906 15 6 2.4863 -6.9752 2.3370 16 8 2.8026 -6.7344 3.4828 17 6 3.0558 -8.1813 1.6356 18 6 1.9214 -9.1532 1.2505 19 6 2.5358 -10.5589 1.4698 20 6 3.3931 -10.3630 2.7448 21 6 3.9914 -8.9501 2.5850 22 6 0.8950 -4.9309 2.0559 23 6 1.9360 -3.7333 -0.0048 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5583 -2.0551 0.8858 26 1 -0.5551 -2.0743 -0.8984 27 1 -1.2884 -4.2576 0.6859 28 1 -0.6628 -4.4075 -0.9895 29 1 0.1043 -6.7072 0.2528 30 1 1.7490 -6.3907 -0.4571 31 1 3.6009 -7.8716 0.7440 32 1 1.0583 -9.0088 1.9003 33 1 1.6408 -9.0174 0.2061 34 1 3.1614 -10.8426 0.6235 35 1 1.7567 -11.3022 1.6386 36 1 4.1856 -11.1100 2.7902 37 1 2.7699 -10.4146 3.6377 38 1 4.9904 -9.0142 2.1537 39 1 4.0342 -8.4502 3.5528 40 1 1.4935 -4.2133 2.6170 41 1 -0.0828 -5.1120 2.5022 42 1 2.1960 -4.0285 -1.0215 43 1 2.8183 -3.7526 0.6347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072383925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:56 Heat of formation + Delta-G solvation = -5.101983 kcal Electronic energy + Delta-G solvation = -22298.412900 eV Core-core repulsion = 19150.980503 eV Total energy + Delta-G solvation = -3147.432397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88640 -40.13339 -37.88307 -37.19724 -34.12780 -31.66382 -30.63325 -29.59711 -29.24633 -27.44753 -27.22497 -25.36478 -22.37255 -22.04667 -21.48353 -19.95517 -19.50198 -18.79739 -18.22113 -17.18964 -16.78131 -16.65462 -16.21404 -16.05144 -15.55894 -15.21045 -14.73362 -14.30678 -14.16571 -13.99587 -13.76865 -13.67532 -13.23220 -12.88484 -12.78206 -12.64733 -12.42419 -12.27309 -12.07581 -12.03041 -11.95238 -11.90486 -11.70304 -11.66760 -11.59232 -11.38984 -11.26932 -10.69692 -10.60209 -9.70602 -8.88425 -7.85358 -5.20084 1.44206 1.47125 1.53310 1.62725 1.82098 2.48424 3.28633 3.34608 3.42564 3.61039 3.66045 3.74636 3.81746 4.11906 4.16926 4.20611 4.40855 4.49218 4.54119 4.56188 4.59900 4.65103 4.68936 4.73500 4.81829 4.83391 4.87376 4.98763 5.02070 5.07781 5.10786 5.15002 5.24455 5.25590 5.27318 5.42938 5.44366 5.48687 5.72989 5.81421 6.21229 6.75609 7.11647 7.13699 7.78381 8.41522 9.24148 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.003803 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.864781 B = 7360.543285 C = 7745.706497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.628 5.628 10 C 0.183 3.817 11 C -0.110 4.110 12 C -0.098 4.098 13 C 0.136 3.864 14 N -0.639 5.639 15 C 0.529 3.471 16 O -0.599 6.599 17 C -0.103 4.103 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.124 4.124 22 C 0.120 3.880 23 C 0.159 3.841 24 H 0.247 0.753 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.040 0.960 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -22.611 -1.752 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.149 4.149 12 C -0.100 4.100 13 C 0.014 3.986 14 N -0.373 5.373 15 C 0.320 3.680 16 O -0.481 6.481 17 C -0.124 4.124 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.002 4.002 23 C 0.034 3.966 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.058 0.942 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.547 -22.395 -1.060 22.473 hybrid contribution 0.461 1.869 0.503 1.990 sum 2.008 -20.525 -0.556 20.631 Atomic orbital electron populations 1.70172 1.06068 1.25276 1.58121 1.25585 0.96636 1.00774 1.02596 0.85209 0.77238 0.79128 0.78106 1.20147 1.21780 1.20846 1.19361 0.90804 0.84045 1.43244 0.90686 1.44856 1.02729 1.00797 1.87076 1.21008 0.83174 0.92390 0.97648 1.22517 0.95741 0.94393 1.02247 1.22315 0.97382 0.95545 0.94753 1.23245 0.99739 0.92371 0.83209 1.50292 1.43460 1.26458 1.17068 1.21079 0.77824 0.83526 0.85542 1.90634 1.62516 1.74507 1.20434 1.21972 0.98644 0.92146 0.99678 1.22371 0.95622 0.93839 1.02716 1.22511 0.99294 0.95901 0.97678 1.22361 0.99663 0.95538 0.98479 1.22190 0.98628 0.96020 0.99336 1.22929 0.96213 0.84491 0.96601 1.21181 0.93756 0.84327 0.97325 0.94386 0.97577 0.97233 0.89314 0.88923 0.85686 0.87533 0.86936 0.92465 0.88392 0.89641 0.90202 0.90113 0.92822 0.90269 0.92685 0.93732 0.88095 0.94246 0.96044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.11 10.30 21.65 0.22 -56.88 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.25 -14.02 10.28 84.03 0.86 -13.16 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.63 -32.09 3.41 -693.33 -2.36 -34.45 16 10 C 0.18 8.67 5.39 86.80 0.47 9.14 16 11 C -0.11 -3.45 6.36 31.36 0.20 -3.25 16 12 C -0.10 -2.95 0.99 -52.16 -0.05 -3.00 16 13 C 0.14 2.70 7.46 85.90 0.64 3.34 16 14 N -0.64 -17.69 3.59 -863.60 -3.10 -20.79 16 15 C 0.53 15.95 7.23 87.66 0.63 16.58 16 16 O -0.60 -23.98 15.93 -3.04 -0.05 -24.03 16 17 C -0.10 -2.11 3.10 -10.82 -0.03 -2.14 16 18 C -0.11 -1.55 5.77 31.69 0.18 -1.36 16 19 C -0.12 -1.37 6.91 31.91 0.22 -1.15 16 20 C -0.12 -1.93 6.83 31.67 0.22 -1.71 16 21 C -0.12 -2.58 6.40 31.32 0.20 -2.38 16 22 C 0.12 3.86 8.14 85.91 0.70 4.56 16 23 C 0.16 6.29 6.63 86.28 0.57 6.87 16 24 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 25 H 0.01 0.32 7.40 -2.38 -0.02 0.31 16 26 H 0.01 0.51 7.47 -2.39 -0.02 0.49 16 27 H 0.09 2.38 7.99 -2.39 -0.02 2.36 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.11 1.68 8.12 -2.39 -0.02 1.66 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 0.97 7.85 -2.39 -0.02 0.95 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.54 6.39 -2.38 -0.02 1.53 16 40 H 0.04 1.77 8.12 -2.39 -0.02 1.75 16 41 H 0.10 2.83 8.04 -2.39 -0.02 2.82 16 42 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 Total: -1.00 -75.18 338.09 2.98 -72.20 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.97 Total: 6.20 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.28 Total: 9.18 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -5.24 Total: -112.13 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.18 2.98 -72.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072383925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.097 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds