Wall clock time and date at job start Mon Mar 30 2020 23:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48501 * 109.46932 * 274.98346 * 3 2 1 5 5 H 1.48505 * 109.47258 * 34.98073 * 3 2 1 6 6 H 1.48494 * 109.47229 * 154.98300 * 3 2 1 7 7 C 1.38805 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00057 * 178.42700 * 7 2 1 9 9 N 1.36940 * 120.00448 * 358.41694 * 7 2 1 10 10 C 1.46379 * 125.49588 * 194.02229 * 9 7 2 11 11 C 1.53751 * 108.45031 * 181.42486 * 10 9 7 12 12 H 1.08998 * 113.83196 * 250.87056 * 11 10 9 13 13 C 1.55169 * 108.30872 * 123.94166 * 11 10 9 14 14 C 1.54860 * 101.73691 * 285.38484 * 13 11 10 15 15 N 1.47407 * 104.81392 * 322.77009 * 14 13 11 16 16 C 1.34773 * 125.58919 * 204.39563 * 15 14 13 17 17 O 1.21282 * 120.00173 * 183.68636 * 16 15 14 18 18 C 1.50699 * 120.00158 * 3.69331 * 16 15 14 19 19 C 1.54891 * 110.48693 * 73.44430 * 18 16 15 20 20 C 1.55235 * 102.58796 * 156.67926 * 19 18 16 21 21 C 1.54267 * 104.23352 * 322.08160 * 20 19 18 22 22 C 1.53880 * 106.59542 * 23.61286 * 21 20 19 23 23 C 1.46706 * 108.82270 * 24.66607 * 15 14 13 24 24 H 1.08998 * 111.53188 * 235.83231 * 23 15 14 25 25 C 1.46717 * 125.30772 * 13.68843 * 9 7 2 26 26 H 0.96991 * 120.00282 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.93141 * 61.43815 * 10 9 7 28 28 H 1.08996 * 109.21657 * 300.99705 * 10 9 7 29 29 H 1.09005 * 110.97728 * 167.26933 * 13 11 10 30 30 H 1.09005 * 110.97695 * 43.49606 * 13 11 10 31 31 H 1.08996 * 110.37358 * 203.94072 * 14 13 11 32 32 H 1.08999 * 110.46837 * 81.65119 * 14 13 11 33 33 H 1.08999 * 110.43096 * 310.90645 * 18 16 15 34 34 H 1.09003 * 110.75460 * 275.06840 * 19 18 16 35 35 H 1.09001 * 110.75596 * 38.43780 * 19 18 16 36 36 H 1.09003 * 110.46563 * 203.38915 * 20 19 18 37 37 H 1.09008 * 110.46980 * 80.77639 * 20 19 18 38 38 H 1.08995 * 110.03190 * 264.33011 * 21 20 19 39 39 H 1.08999 * 110.02913 * 142.89281 * 21 20 19 40 40 H 1.09001 * 110.02989 * 240.71517 * 22 21 20 41 41 H 1.08998 * 110.03070 * 119.28357 * 22 21 20 42 42 H 1.09004 * 109.98425 * 42.73139 * 25 9 7 43 43 H 1.08996 * 109.98367 * 281.42570 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0900 -1.2023 -0.0262 9 7 1.3261 -2.3879 0.0317 10 6 1.9095 -3.6981 0.3241 11 6 0.8009 -4.7585 0.2204 12 1 0.5025 -5.1790 1.1807 13 6 1.2482 -5.8325 -0.8063 14 6 1.0520 -5.0859 -2.1488 15 7 -0.1689 -4.2823 -1.9582 16 6 -0.9812 -3.8447 -2.9406 17 8 -1.9257 -3.1320 -2.6742 18 6 -0.7160 -4.2410 -4.3702 19 6 -1.0934 -5.7256 -4.6000 20 6 -1.3449 -5.7776 -6.1310 21 6 -2.0399 -4.4370 -6.4469 22 6 -1.6400 -3.4601 -5.3273 23 6 -0.3514 -4.0313 -0.5243 24 1 -1.3280 -4.3714 -0.1798 25 6 -0.1117 -2.5442 -0.2152 26 1 -0.4850 0.8399 -0.0004 27 1 2.3296 -3.7017 1.3300 28 1 2.6930 -3.9122 -0.4027 29 1 0.6088 -6.7137 -0.7528 30 1 2.2941 -6.1017 -0.6588 31 1 0.9143 -5.7980 -2.9624 32 1 1.9046 -4.4381 -2.3528 33 1 0.3298 -4.0694 -4.6248 34 1 -0.2695 -6.3816 -4.3189 35 1 -1.9987 -5.9836 -4.0506 36 1 -1.9973 -6.6140 -6.3818 37 1 -0.4006 -5.8541 -6.6701 38 1 -3.1216 -4.5706 -6.4572 39 1 -1.7007 -4.0588 -7.4113 40 1 -2.5277 -3.1195 -4.7943 41 1 -1.1068 -2.6077 -5.7484 42 1 -0.4120 -1.9336 -1.0668 43 1 -0.6757 -2.2521 0.6705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075479074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:06 Heat of formation + Delta-G solvation = -15.362524 kcal Electronic energy + Delta-G solvation = -23148.608375 eV Core-core repulsion = 20000.731048 eV Total energy + Delta-G solvation = -3147.877327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27911 -38.48990 -36.56162 -34.68159 -32.16174 -30.80740 -29.62963 -28.65232 -28.25202 -26.25953 -24.63467 -22.92320 -21.39817 -20.63062 -20.11442 -19.32209 -18.27406 -17.18605 -16.58031 -15.98441 -15.50569 -14.98372 -14.64540 -14.14909 -13.78006 -13.62042 -13.38821 -13.25812 -12.80959 -12.44192 -12.21065 -11.83847 -11.67054 -11.55883 -11.27508 -11.16346 -11.07254 -10.95309 -10.93580 -10.76601 -10.68186 -10.44614 -10.33374 -10.23884 -10.07817 -9.80561 -9.71872 -9.14929 -8.50725 -8.02558 -6.69146 -5.66331 -3.03501 3.15223 3.42509 3.47184 3.48700 3.50106 4.50938 4.53255 4.59912 4.72551 4.84582 4.91005 5.17398 5.29258 5.40990 5.44313 5.52243 5.53519 5.54538 5.58597 5.64469 5.68905 5.75925 5.80444 5.87977 5.91301 5.92089 6.06006 6.08549 6.18410 6.29123 6.33312 6.39220 6.46801 6.59794 6.65956 6.72620 6.93137 7.63973 7.67553 7.94037 8.11744 8.38432 8.74769 9.27315 9.88795 10.55208 11.44525 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.005940 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.298120 B = 4712.544366 C = 5640.993966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.074 0.926 9 N -0.598 5.598 10 C 0.143 3.857 11 C -0.109 4.109 12 H 0.095 0.905 13 C -0.124 4.124 14 C 0.101 3.899 15 N -0.599 5.599 16 C 0.533 3.467 17 O -0.533 6.533 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.115 4.115 23 C 0.112 3.888 24 H 0.076 0.924 25 C 0.171 3.829 26 H 0.253 0.747 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -15.143 -8.925 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.324 5.324 10 C 0.017 3.983 11 C -0.129 4.129 12 H 0.114 0.886 13 C -0.162 4.162 14 C -0.022 4.022 15 N -0.333 5.333 16 C 0.321 3.679 17 O -0.409 6.409 18 C -0.130 4.130 19 C -0.148 4.148 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.153 4.153 23 C 0.008 3.992 24 H 0.094 0.906 25 C 0.045 3.955 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.732 -14.487 -8.845 16.989 hybrid contribution 0.622 0.955 0.092 1.144 sum -0.110 -13.531 -8.753 16.116 Atomic orbital electron populations 1.69976 1.04902 1.25169 1.55664 1.24932 0.95644 0.97778 1.01622 0.86154 0.78691 0.83762 0.77464 1.21688 1.21606 1.20582 1.18937 0.90315 0.82254 1.44840 0.90794 1.44090 1.04848 1.01662 1.81849 1.21115 0.93593 0.86158 0.97450 1.23049 0.96377 0.95535 0.97921 0.88635 1.22791 1.01711 0.97347 0.94350 1.22325 0.88277 0.93761 0.97809 1.48266 1.25207 1.53079 1.06702 1.20006 0.81965 0.79699 0.86254 1.90698 1.30499 1.36320 1.83417 1.22094 1.01671 0.96862 0.92396 1.22531 1.01636 0.94181 0.96486 1.22409 1.00496 0.97547 0.95524 1.22136 1.00376 0.95075 0.98475 1.22091 1.00431 0.97531 0.95199 1.22683 0.97318 0.99793 0.79415 0.90558 1.21331 0.85074 0.88475 1.00612 0.93626 0.96184 0.96013 0.91194 0.90101 0.91241 0.91204 0.88896 0.91042 0.91075 0.91639 0.91526 0.91832 0.91929 0.89530 0.91597 0.90555 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 10.46 55.49 0.58 -27.60 16 2 C 0.00 -0.07 5.48 -17.43 -0.10 -0.16 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.73 10.22 -15.06 -0.15 -6.88 16 8 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.60 -15.63 3.37 -172.23 -0.58 -16.21 16 10 C 0.14 2.93 6.39 -3.72 -0.02 2.91 16 11 C -0.11 -1.82 4.27 -87.87 -0.38 -2.20 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.57 6.31 -24.60 -0.16 -1.73 16 14 C 0.10 1.44 6.13 -2.57 -0.02 1.43 16 15 N -0.60 -10.89 3.01 -162.27 -0.49 -11.38 16 16 C 0.53 10.15 6.79 -10.99 -0.07 10.08 16 17 O -0.53 -12.45 14.98 5.56 0.08 -12.36 16 18 C -0.11 -1.56 2.44 -90.11 -0.22 -1.78 16 19 C -0.11 -1.23 5.99 -24.55 -0.15 -1.38 16 20 C -0.12 -1.15 6.84 -24.88 -0.17 -1.32 16 21 C -0.12 -1.30 6.80 -25.61 -0.17 -1.48 16 22 C -0.11 -1.60 6.24 -25.61 -0.16 -1.76 16 23 C 0.11 2.24 3.67 -66.21 -0.24 2.00 16 24 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 25 C 0.17 4.42 4.89 -3.53 -0.02 4.40 16 26 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.43 6.78 -51.93 -0.35 0.08 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 31 H 0.07 0.78 5.74 -51.93 -0.30 0.48 16 32 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 33 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 34 H 0.07 0.68 6.53 -51.93 -0.34 0.34 16 35 H 0.07 0.85 8.05 -51.93 -0.42 0.44 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.42 6.77 -51.93 -0.35 1.07 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 2.30 6.12 -51.93 -0.32 1.99 16 43 H 0.03 0.95 7.81 -51.93 -0.41 0.55 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -33.86 325.80 -9.59 -43.46 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.05 Total: -0.67 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -2.03 Total: 2.13 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.49 Total: -55.18 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.86 -9.59 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075479074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.094 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds