Wall clock time and date at job start Mon Mar 30 2020 23:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99782 * 2 1 4 4 H 1.48501 * 109.46932 * 274.98346 * 3 2 1 5 5 H 1.48505 * 109.47258 * 34.98073 * 3 2 1 6 6 H 1.48494 * 109.47229 * 154.98300 * 3 2 1 7 7 C 1.38805 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00057 * 178.42700 * 7 2 1 9 9 N 1.36940 * 120.00448 * 358.41694 * 7 2 1 10 10 C 1.46379 * 125.49588 * 194.02229 * 9 7 2 11 11 C 1.53751 * 108.45031 * 181.42486 * 10 9 7 12 12 H 1.08998 * 113.83196 * 250.87056 * 11 10 9 13 13 C 1.55169 * 108.30872 * 123.94166 * 11 10 9 14 14 C 1.54860 * 101.73691 * 285.38484 * 13 11 10 15 15 N 1.47407 * 104.81392 * 322.77009 * 14 13 11 16 16 C 1.34773 * 125.58919 * 204.39563 * 15 14 13 17 17 O 1.21282 * 120.00173 * 183.68636 * 16 15 14 18 18 C 1.50699 * 120.00158 * 3.69331 * 16 15 14 19 19 C 1.54891 * 110.48693 * 73.44430 * 18 16 15 20 20 C 1.55235 * 102.58796 * 156.67926 * 19 18 16 21 21 C 1.54267 * 104.23352 * 322.08160 * 20 19 18 22 22 C 1.53880 * 106.59542 * 23.61286 * 21 20 19 23 23 C 1.46706 * 108.82270 * 24.66607 * 15 14 13 24 24 H 1.08998 * 111.53188 * 235.83231 * 23 15 14 25 25 C 1.46717 * 125.30772 * 13.68843 * 9 7 2 26 26 H 0.96991 * 120.00282 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.93141 * 61.43815 * 10 9 7 28 28 H 1.08996 * 109.21657 * 300.99705 * 10 9 7 29 29 H 1.09005 * 110.97728 * 167.26933 * 13 11 10 30 30 H 1.09005 * 110.97695 * 43.49606 * 13 11 10 31 31 H 1.08996 * 110.37358 * 203.94072 * 14 13 11 32 32 H 1.08999 * 110.46837 * 81.65119 * 14 13 11 33 33 H 1.08999 * 110.43096 * 310.90645 * 18 16 15 34 34 H 1.09003 * 110.75460 * 275.06840 * 19 18 16 35 35 H 1.09001 * 110.75596 * 38.43780 * 19 18 16 36 36 H 1.09003 * 110.46563 * 203.38915 * 20 19 18 37 37 H 1.09008 * 110.46980 * 80.77639 * 20 19 18 38 38 H 1.08995 * 110.03190 * 264.33011 * 21 20 19 39 39 H 1.08999 * 110.02913 * 142.89281 * 21 20 19 40 40 H 1.09001 * 110.02989 * 240.71517 * 22 21 20 41 41 H 1.08998 * 110.03070 * 119.28357 * 22 21 20 42 42 H 1.09004 * 109.98425 * 42.73139 * 25 9 7 43 43 H 1.08996 * 109.98367 * 281.42570 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0900 -1.2023 -0.0262 9 7 1.3261 -2.3879 0.0317 10 6 1.9095 -3.6981 0.3241 11 6 0.8009 -4.7585 0.2204 12 1 0.5025 -5.1790 1.1807 13 6 1.2482 -5.8325 -0.8063 14 6 1.0520 -5.0859 -2.1488 15 7 -0.1689 -4.2823 -1.9582 16 6 -0.9812 -3.8447 -2.9406 17 8 -1.9257 -3.1320 -2.6742 18 6 -0.7160 -4.2410 -4.3702 19 6 -1.0934 -5.7256 -4.6000 20 6 -1.3449 -5.7776 -6.1310 21 6 -2.0399 -4.4370 -6.4469 22 6 -1.6400 -3.4601 -5.3273 23 6 -0.3514 -4.0313 -0.5243 24 1 -1.3280 -4.3714 -0.1798 25 6 -0.1117 -2.5442 -0.2152 26 1 -0.4850 0.8399 -0.0004 27 1 2.3296 -3.7017 1.3300 28 1 2.6930 -3.9122 -0.4027 29 1 0.6088 -6.7137 -0.7528 30 1 2.2941 -6.1017 -0.6588 31 1 0.9143 -5.7980 -2.9624 32 1 1.9046 -4.4381 -2.3528 33 1 0.3298 -4.0694 -4.6248 34 1 -0.2695 -6.3816 -4.3189 35 1 -1.9987 -5.9836 -4.0506 36 1 -1.9973 -6.6140 -6.3818 37 1 -0.4006 -5.8541 -6.6701 38 1 -3.1216 -4.5706 -6.4572 39 1 -1.7007 -4.0588 -7.4113 40 1 -2.5277 -3.1195 -4.7943 41 1 -1.1068 -2.6077 -5.7484 42 1 -0.4120 -1.9336 -1.0668 43 1 -0.6757 -2.2521 0.6705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075479074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:05 Heat of formation + Delta-G solvation = -37.515821 kcal Electronic energy + Delta-G solvation = -23149.569014 eV Core-core repulsion = 20000.731048 eV Total energy + Delta-G solvation = -3148.837966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.72075 -39.85994 -37.81269 -36.49267 -33.98919 -32.44616 -31.08594 -29.74051 -29.53329 -27.86810 -26.58870 -24.25200 -22.91557 -21.85401 -21.31563 -20.73941 -19.65171 -18.95866 -18.20885 -17.40137 -16.92421 -16.47996 -16.12560 -15.70906 -15.51273 -14.94206 -14.59323 -14.48990 -14.25112 -13.99911 -13.79930 -13.46843 -13.03172 -13.00987 -12.88229 -12.80063 -12.47166 -12.16084 -12.11185 -12.06608 -11.99426 -11.89837 -11.76810 -11.69464 -11.56800 -11.43674 -11.28656 -10.77428 -10.61347 -9.55575 -8.84121 -7.89391 -5.29196 1.39145 1.41953 1.51754 1.69472 2.11701 2.44859 3.27112 3.38108 3.56502 3.63097 3.67540 3.77559 3.83407 4.01516 4.20072 4.26282 4.43386 4.49357 4.50470 4.52309 4.58534 4.59036 4.62767 4.75653 4.81416 4.87072 4.94159 5.02949 5.10713 5.12790 5.17552 5.22323 5.28605 5.30146 5.37308 5.40576 5.44602 5.49457 5.63911 5.77205 6.20091 6.68926 7.04959 7.28215 7.76121 8.40670 9.20375 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.005940 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.298120 B = 4712.544366 C = 5640.993966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.619 5.619 10 C 0.136 3.864 11 C -0.097 4.097 12 H 0.120 0.880 13 C -0.105 4.105 14 C 0.094 3.906 15 N -0.601 5.601 16 C 0.519 3.481 17 O -0.593 6.593 18 C -0.104 4.104 19 C -0.103 4.103 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.121 4.121 23 C 0.114 3.886 24 H 0.075 0.925 25 C 0.186 3.814 26 H 0.244 0.756 27 H 0.024 0.976 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.021 0.979 43 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 -18.720 -10.235 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.183 1.183 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.345 5.345 10 C 0.011 3.989 11 C -0.116 4.116 12 H 0.138 0.862 13 C -0.143 4.143 14 C -0.027 4.027 15 N -0.333 5.333 16 C 0.309 3.691 17 O -0.474 6.474 18 C -0.125 4.125 19 C -0.141 4.141 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.159 4.159 23 C 0.008 3.992 24 H 0.093 0.907 25 C 0.059 3.941 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges 1.810 -18.130 -10.156 20.860 hybrid contribution -0.141 2.110 0.531 2.180 sum 1.669 -16.020 -9.625 18.764 Atomic orbital electron populations 1.70266 1.06804 1.25173 1.57668 1.25861 0.96424 1.01649 1.02213 0.85056 0.78099 0.78973 0.77195 1.21658 1.22195 1.18297 1.19420 0.91032 0.83547 1.43251 0.89723 1.44380 1.04916 1.03252 1.81928 1.21406 0.95173 0.84533 0.97788 1.23078 0.93055 0.95545 0.99941 0.86222 1.22842 1.04164 0.96456 0.90798 1.22645 0.85679 0.93840 1.00577 1.48412 1.26289 1.53026 1.05549 1.21045 0.81163 0.78612 0.88287 1.90668 1.33188 1.38911 1.84607 1.22174 1.02245 0.99453 0.88645 1.22559 1.02059 0.91572 0.97875 1.22414 1.01672 0.96962 0.94012 1.22123 1.00758 0.95128 0.97570 1.22115 0.98954 0.98559 0.96243 1.22429 0.98996 0.95992 0.81750 0.90718 1.20893 0.84891 0.91957 0.96327 0.94718 0.95845 0.94295 0.87974 0.87083 0.87120 0.92750 0.87602 0.88283 0.92279 0.89670 0.89580 0.91769 0.90312 0.93127 0.92358 0.96051 0.99659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.82 10.46 21.65 0.23 -62.60 16 2 C -0.07 -4.14 5.48 84.86 0.46 -3.68 16 3 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 4 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.24 -14.24 10.22 84.03 0.86 -13.38 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 9 N -0.62 -33.16 3.37 -698.80 -2.36 -35.52 16 10 C 0.14 5.36 6.39 86.66 0.55 5.91 16 11 C -0.10 -2.98 4.27 -9.01 -0.04 -3.02 16 12 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 13 C -0.10 -2.11 6.31 31.97 0.20 -1.91 16 14 C 0.09 2.34 6.13 86.84 0.53 2.87 16 15 N -0.60 -21.59 3.01 -785.68 -2.36 -23.96 16 16 C 0.52 20.39 6.79 87.66 0.60 20.98 16 17 O -0.59 -30.02 14.98 -3.04 -0.05 -30.06 16 18 C -0.10 -2.89 2.44 -10.46 -0.03 -2.91 16 19 C -0.10 -1.95 5.99 32.01 0.19 -1.76 16 20 C -0.11 -1.68 6.84 31.79 0.22 -1.46 16 21 C -0.12 -2.29 6.80 31.32 0.21 -2.08 16 22 C -0.12 -3.45 6.24 31.32 0.20 -3.25 16 23 C 0.11 4.61 3.67 45.99 0.17 4.78 16 24 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 25 C 0.19 10.25 4.89 86.60 0.42 10.68 16 26 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.04 1.43 6.78 -2.39 -0.02 1.41 16 29 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.11 1.70 7.96 -2.38 -0.02 1.68 16 31 H 0.11 1.87 5.74 -2.39 -0.01 1.85 16 32 H 0.05 1.55 7.49 -2.39 -0.02 1.53 16 33 H 0.11 2.66 7.97 -2.39 -0.02 2.64 16 34 H 0.10 1.34 6.53 -2.39 -0.02 1.33 16 35 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.80 6.77 -2.39 -0.02 1.79 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.02 1.39 6.12 -2.39 -0.01 1.37 16 43 H -0.01 -0.91 7.81 -2.39 -0.02 -0.93 16 Total: -1.00 -83.30 325.80 3.02 -80.27 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.98 Total: 9.85 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.55 Total: 11.75 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.49 Total: -122.07 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -83.30 3.02 -80.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075479074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.758 kcal (2) G-P(sol) polarization free energy of solvation -83.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds