Wall clock time and date at job start Mon Mar 30 2020 23:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48503 * 109.47381 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47020 * 299.99959 * 3 2 1 6 6 H 1.48496 * 109.47334 * 60.00095 * 3 2 1 7 7 C 1.38807 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00393 * 194.43439 * 7 2 1 9 9 N 1.36941 * 120.00364 * 14.43708 * 7 2 1 10 10 C 1.46532 * 119.74467 * 205.16535 * 9 7 2 11 11 C 1.53143 * 108.25296 * 236.44449 * 10 9 7 12 12 C 1.53067 * 109.21052 * 301.58691 * 11 10 9 13 13 H 1.09006 * 113.84160 * 274.47971 * 12 11 10 14 14 C 1.54078 * 111.39177 * 142.40041 * 12 11 10 15 15 N 1.47285 * 87.60398 * 273.96862 * 14 12 11 16 16 C 1.34780 * 136.53829 * 151.36526 * 15 14 12 17 17 O 1.21278 * 119.99674 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00154 * 0.02562 * 16 15 14 19 19 C 1.53879 * 110.03121 * 179.97438 * 18 16 15 20 20 C 1.54263 * 106.63821 * 240.69510 * 19 18 16 21 21 C 1.54962 * 104.16294 * 336.44110 * 20 19 18 22 22 C 1.54268 * 110.02954 * 62.83440 * 18 16 15 23 23 C 1.46459 * 86.91644 * 331.62182 * 15 14 12 24 24 H 1.08998 * 111.44281 * 276.12768 * 23 15 14 25 25 C 1.45708 * 119.73324 * 25.18185 * 9 7 2 26 26 H 0.96999 * 120.00101 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.71126 * 116.74916 * 10 9 7 28 28 H 1.09008 * 109.74132 * 356.15104 * 10 9 7 29 29 H 1.09007 * 109.51569 * 181.66652 * 11 10 9 30 30 H 1.08996 * 109.56221 * 61.52949 * 11 10 9 31 31 H 1.09005 * 113.52849 * 159.28813 * 14 12 11 32 32 H 1.09000 * 113.53246 * 28.65550 * 14 12 11 33 33 H 1.08996 * 110.05479 * 301.41283 * 18 16 15 34 34 H 1.09006 * 110.02960 * 0.02562 * 19 18 16 35 35 H 1.08997 * 110.03360 * 121.38273 * 19 18 16 36 36 H 1.08997 * 110.49035 * 95.09777 * 20 19 18 37 37 H 1.09010 * 110.48061 * 217.73588 * 20 19 18 38 38 H 1.08997 * 110.72424 * 279.58036 * 21 20 19 39 39 H 1.08998 * 110.92554 * 156.30037 * 21 20 19 40 40 H 1.08997 * 110.48443 * 261.56599 * 22 18 16 41 41 H 1.08996 * 110.48873 * 24.08587 * 22 18 16 42 42 H 1.09001 * 108.78791 * 260.87546 * 25 9 7 43 43 H 1.08994 * 108.79092 * 19.20994 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0647 -1.2171 0.2326 9 7 1.3580 -2.3692 -0.2967 10 6 1.8764 -3.6414 0.2132 11 6 2.1188 -4.5726 -0.9781 12 6 0.8059 -4.7669 -1.7408 13 1 0.1767 -5.5614 -1.3395 14 6 1.0435 -4.8284 -3.2619 15 7 0.9677 -3.3575 -3.2708 16 6 1.4797 -2.3560 -4.0134 17 8 1.2109 -1.2041 -3.7458 18 6 2.3863 -2.6677 -5.1762 19 6 2.8349 -1.3637 -5.8590 20 6 2.3270 -1.4297 -7.3142 21 6 2.1605 -2.9456 -7.5893 22 6 1.6203 -3.4807 -6.2402 23 6 0.0899 -3.4745 -2.1042 24 1 -0.9429 -3.6593 -2.3996 25 6 0.1541 -2.3362 -1.1168 26 1 -0.4850 0.8400 -0.0004 27 1 1.1486 -4.0906 0.8889 28 1 2.8136 -3.4711 0.7432 29 1 2.4775 -5.5374 -0.6191 30 1 2.8629 -4.1312 -1.6410 31 1 0.2330 -5.3092 -3.8098 32 1 2.0256 -5.2153 -3.5337 33 1 3.2558 -3.2279 -4.8326 34 1 2.3972 -0.5055 -5.3490 35 1 3.9223 -1.2903 -5.8460 36 1 1.3693 -0.9177 -7.4076 37 1 3.0604 -0.9961 -7.9942 38 1 3.1209 -3.4017 -7.8294 39 1 1.4412 -3.1193 -8.3896 40 1 1.8378 -4.5438 -6.1375 41 1 0.5482 -3.3018 -6.1583 42 1 -0.7171 -2.3862 -0.4637 43 1 0.1281 -1.3943 -1.6645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084146105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:13 Heat of formation + Delta-G solvation = 20.526842 kcal Electronic energy + Delta-G solvation = -23431.183893 eV Core-core repulsion = 20284.862845 eV Total energy + Delta-G solvation = -3146.321047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57427 -38.62729 -36.36606 -35.16186 -32.11038 -30.18565 -29.91527 -28.60659 -27.92639 -26.82987 -23.81293 -23.02914 -21.43915 -20.73214 -20.63605 -19.08636 -17.72156 -17.06671 -16.06184 -15.78389 -15.49632 -15.15594 -14.45942 -14.09638 -13.62572 -13.42816 -13.34452 -13.22329 -12.98807 -12.57612 -12.36606 -11.87647 -11.50321 -11.41204 -11.26401 -11.09997 -11.02172 -10.95253 -10.74266 -10.63698 -10.57752 -10.44630 -10.32322 -10.12779 -9.80818 -9.73399 -9.47697 -8.81468 -8.24886 -8.02216 -6.54608 -5.61075 -3.02841 3.31764 3.38725 3.50324 3.57976 3.59241 4.56249 4.64363 4.66183 4.73570 4.74923 5.11374 5.24415 5.44894 5.48475 5.50366 5.53089 5.55106 5.61608 5.64599 5.67259 5.72351 5.77712 5.85360 5.91728 5.94529 6.05039 6.18425 6.24295 6.24629 6.35899 6.37480 6.43053 6.57709 6.59604 6.65378 6.82601 7.03572 7.55350 7.82686 7.99291 8.45467 8.62378 8.89322 9.40418 10.04942 10.52207 11.47170 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.007500 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.830315 B = 3732.646689 C = 4962.541144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.251 4.251 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.115 4.115 12 C -0.114 4.114 13 H 0.090 0.910 14 C 0.097 3.903 15 N -0.631 5.631 16 C 0.544 3.456 17 O -0.515 6.515 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.110 4.110 23 C 0.119 3.881 24 H 0.068 0.932 25 C 0.166 3.834 26 H 0.251 0.749 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.028 0.972 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -12.065 -12.018 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.080 0.920 9 N -0.307 5.307 10 C 0.021 3.979 11 C -0.154 4.154 12 C -0.133 4.133 13 H 0.108 0.892 14 C -0.026 4.026 15 N -0.368 5.368 16 C 0.333 3.667 17 O -0.390 6.390 18 C -0.127 4.127 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.148 4.148 23 C 0.015 3.985 24 H 0.086 0.914 25 C 0.040 3.960 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.750 -11.072 -12.006 16.562 hybrid contribution 0.371 0.701 -0.118 0.802 sum 3.121 -10.371 -12.124 16.257 Atomic orbital electron populations 1.70016 1.05216 1.25090 1.54583 1.24908 0.95247 0.98091 1.00521 0.86250 0.79187 0.84409 0.77031 1.20536 1.21514 1.21977 1.19125 0.91642 0.84634 1.42622 0.92033 1.43470 1.29708 1.01553 1.55998 1.20717 0.97336 0.87311 0.92499 1.21838 0.94926 0.99244 0.99423 1.22698 0.98843 0.97754 0.94035 0.89175 1.23274 1.00965 0.81793 0.96615 1.49415 1.49888 1.05853 1.31604 1.19840 0.80869 0.83958 0.82072 1.90749 1.60008 1.19344 1.68878 1.21844 0.98183 0.98480 0.94178 1.22167 1.00640 0.97991 0.95025 1.22366 1.01218 0.96040 0.96408 1.22500 1.00750 0.96055 0.96737 1.22292 0.99930 0.98805 0.93746 1.22467 0.92748 0.96827 0.86485 0.91379 1.20170 0.88744 0.96421 0.90643 0.93913 0.96335 0.92679 0.92777 0.92179 0.90748 0.91297 0.89252 0.88954 0.91743 0.91614 0.91773 0.91508 0.91658 0.91403 0.91418 0.95404 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 10.94 55.49 0.61 -27.34 16 2 C 0.01 0.32 4.94 -17.43 -0.09 0.23 16 3 Si 0.90 23.76 29.58 -169.99 -5.03 18.73 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 7 C -0.25 -7.30 9.53 -15.06 -0.14 -7.44 16 8 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.58 -15.20 3.03 -175.06 -0.53 -15.73 16 10 C 0.15 3.11 6.46 -3.95 -0.03 3.08 16 11 C -0.11 -1.93 5.69 -26.62 -0.15 -2.08 16 12 C -0.11 -1.76 4.57 -90.46 -0.41 -2.17 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.10 1.30 7.44 -11.55 -0.09 1.21 16 15 N -0.63 -11.52 3.31 -188.07 -0.62 -12.14 16 16 C 0.54 10.85 7.18 -10.98 -0.08 10.77 16 17 O -0.52 -13.03 14.45 5.56 0.08 -12.95 16 18 C -0.11 -1.58 3.17 -90.65 -0.29 -1.86 16 19 C -0.12 -1.78 6.40 -25.61 -0.16 -1.95 16 20 C -0.12 -1.46 6.84 -25.03 -0.17 -1.63 16 21 C -0.12 -1.26 6.91 -24.71 -0.17 -1.43 16 22 C -0.11 -1.30 5.97 -25.09 -0.15 -1.45 16 23 C 0.12 2.31 3.98 -77.97 -0.31 2.00 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 C 0.17 4.22 4.59 -5.56 -0.03 4.19 16 26 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 1.14 7.87 -51.92 -0.41 0.74 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.69 6.39 -51.93 -0.33 1.36 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 42 H 0.03 0.76 8.00 -51.93 -0.42 0.35 16 43 H 0.10 3.10 4.95 -51.93 -0.26 2.84 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -34.16 330.91 -10.03 -44.19 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.26 Total: -1.23 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.26 Total: 1.48 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.54 Total: -55.21 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.03 Total: 18.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.16 -10.03 -44.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084146105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.716 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds