Wall clock time and date at job start Tue Mar 31 2020 00:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 17 17 H 1.09002 * 109.47452 * 59.99785 * 16 10 9 18 18 N 1.46495 * 109.47436 * 300.00014 * 16 10 9 19 19 C 1.34770 * 120.00960 * 155.00040 * 18 16 10 20 20 O 1.21290 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00782 * 180.02562 * 19 18 16 22 22 C 1.54633 * 111.03643 * 292.02296 * 21 19 18 23 23 C 1.51097 * 104.72583 * 217.33392 * 22 21 19 24 24 C 1.30521 * 111.10450 * 16.43834 * 23 22 21 25 25 C 1.51098 * 111.10612 * 359.97438 * 24 23 22 26 26 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 28 28 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 29 29 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 30 30 H 1.08994 * 109.47099 * 300.00232 * 13 12 10 31 31 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 33 33 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 34 34 H 1.08993 * 109.47008 * 299.99431 * 15 14 13 35 35 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 36 36 H 0.97002 * 119.99681 * 335.00269 * 18 16 10 37 37 H 1.09001 * 110.91172 * 56.03127 * 21 19 18 38 38 H 1.09005 * 110.38611 * 336.14480 * 22 21 19 39 39 H 1.09001 * 110.38844 * 98.51592 * 22 21 19 40 40 H 1.08004 * 124.44384 * 196.41808 * 23 22 21 41 41 H 1.08000 * 124.44609 * 180.02562 * 24 23 22 42 42 H 1.09000 * 110.39137 * 224.75648 * 25 24 23 43 43 H 1.09004 * 110.38712 * 102.37787 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 6 5.0166 -4.2980 1.4551 14 6 6.4063 -4.0878 0.8506 15 6 6.2661 -3.5861 -0.5880 16 6 5.5017 -2.2601 -0.5935 17 1 6.0466 -1.5234 -0.0033 18 7 5.3676 -1.7798 -1.9710 19 6 6.3591 -1.0611 -2.5337 20 8 7.3629 -0.8124 -1.8999 21 6 6.2209 -0.5665 -3.9505 22 6 6.2443 -1.7428 -4.9539 23 6 7.0105 -1.2164 -6.1451 24 6 7.6804 -0.1400 -5.8347 25 6 7.4722 0.2312 -4.3849 26 1 -0.4851 0.8400 0.0004 27 1 3.8646 -0.3621 0.0055 28 1 4.7971 -2.2359 2.0396 29 1 3.2622 -3.1227 1.8798 30 1 4.4713 -5.0345 0.8650 31 1 5.1161 -4.6555 2.4800 32 1 6.9511 -5.0318 0.8550 33 1 6.9517 -3.3512 1.4407 34 1 5.7209 -4.3226 -1.1781 35 1 7.2562 -3.4368 -1.0188 36 1 4.5650 -1.9789 -2.4781 37 1 5.3165 0.0306 -4.0677 38 1 6.7583 -2.6010 -4.5210 39 1 5.2295 -2.0141 -5.2448 40 1 7.0048 -1.6713 -7.1247 41 1 8.3013 0.4131 -6.5239 42 1 7.2925 1.3020 -4.2891 43 1 8.3359 -0.0645 -3.7894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085155683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:50 Heat of formation + Delta-G solvation = -45.799666 kcal Electronic energy + Delta-G solvation = -22501.648249 eV Core-core repulsion = 19352.451069 eV Total energy + Delta-G solvation = -3149.197181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44005 -39.77904 -38.26599 -35.94275 -35.14377 -33.34132 -31.32948 -30.32146 -29.34730 -28.97064 -25.36894 -24.23183 -22.65792 -22.39779 -21.24701 -20.56673 -19.71146 -19.61183 -18.23731 -17.45343 -16.96134 -16.71700 -16.23652 -15.68331 -15.47430 -15.01313 -14.73687 -14.70674 -14.47256 -13.96525 -13.76330 -13.70125 -13.35689 -13.08323 -13.04257 -12.95550 -12.69516 -12.40628 -12.22735 -12.15422 -12.09851 -12.06302 -11.84118 -11.71378 -11.49405 -11.14809 -11.03549 -10.72528 -9.99149 -9.80065 -9.31648 -8.02579 -5.34344 1.33939 1.36127 1.36611 1.41979 1.61995 2.22299 2.45259 3.28961 3.44335 3.48949 3.65010 3.73885 3.89513 4.11205 4.18078 4.23595 4.24732 4.36101 4.40220 4.46991 4.56503 4.59573 4.66201 4.76310 4.82350 4.92324 4.93296 4.98437 5.04187 5.15179 5.17007 5.21919 5.26953 5.29426 5.45132 5.53011 5.59635 5.65334 5.78571 6.00159 6.21501 6.58507 7.06440 7.24791 7.82813 8.00973 9.18766 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.006660 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.042008 B = 4203.397260 C = 5793.962655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.054 4.054 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.216 4.216 8 H 0.066 0.934 9 N -0.748 5.748 10 C 0.176 3.824 11 H 0.061 0.939 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.144 3.856 17 H 0.059 0.941 18 N -0.707 5.707 19 C 0.521 3.479 20 O -0.583 6.583 21 C -0.121 4.121 22 C -0.085 4.085 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.091 4.091 26 H 0.256 0.744 27 H 0.359 0.641 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.410 0.590 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.072 0.928 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.877 -7.270 -9.136 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.246 4.246 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.347 4.347 8 H 0.084 0.916 9 N -0.391 5.391 10 C 0.067 3.933 11 H 0.079 0.921 12 C -0.170 4.170 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.039 3.961 17 H 0.078 0.922 18 N -0.356 5.356 19 C 0.308 3.692 20 O -0.464 6.464 21 C -0.142 4.142 22 C -0.123 4.123 23 C -0.183 4.183 24 C -0.187 4.187 25 C -0.128 4.128 26 H 0.065 0.935 27 H 0.191 0.809 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.246 0.754 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.091 0.909 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.348 -7.178 -8.682 19.853 hybrid contribution -0.470 1.471 0.177 1.555 sum 15.878 -5.707 -8.505 18.895 Atomic orbital electron populations 1.69840 1.06750 1.26325 1.60144 1.25266 0.95784 1.00270 1.03291 0.85626 0.78165 0.81208 0.77971 1.20433 1.22565 1.19386 1.18998 0.82183 0.93391 1.40159 0.91591 1.42819 1.02558 1.03521 1.90154 1.20655 0.89882 0.87536 0.95179 0.92060 1.22074 0.99815 0.97587 0.97559 1.21513 0.95509 0.96171 1.01649 1.21480 0.97090 1.01741 0.94537 1.21799 0.99724 0.95323 0.98444 1.21213 0.96169 0.96487 0.82262 0.92241 1.45991 1.20592 1.54157 1.14855 1.20789 0.82365 0.76869 0.89149 1.90635 1.31325 1.59187 1.65215 1.22235 1.01646 0.99579 0.90760 1.21317 1.02050 0.96114 0.92789 1.23419 0.98486 0.97305 0.99103 1.23401 1.00788 0.98709 0.95799 1.21274 0.96637 0.99940 0.94960 0.93481 0.80856 0.93358 0.93394 0.91181 0.90830 0.89534 0.92580 0.90329 0.92280 0.75407 0.87271 0.90530 0.88773 0.83242 0.83765 0.90915 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.33 13.97 21.65 0.30 -61.02 16 2 C -0.05 -3.12 5.50 84.86 0.47 -2.65 16 3 Si 0.94 45.99 27.74 68.60 1.90 47.89 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.51 6.51 99.48 0.65 -11.86 16 7 C -0.22 -11.68 10.41 84.04 0.87 -10.81 16 8 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.75 -33.35 4.76 -322.93 -1.54 -34.89 16 10 C 0.18 6.17 2.29 44.99 0.10 6.27 16 11 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 12 C -0.13 -4.22 5.50 30.60 0.17 -4.05 16 13 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 14 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 15 C -0.11 -2.81 5.50 30.61 0.17 -2.64 16 16 C 0.14 4.47 1.98 45.01 0.09 4.56 16 17 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 18 N -0.71 -20.83 4.91 -442.47 -2.17 -23.00 16 19 C 0.52 15.97 7.03 87.66 0.62 16.59 16 20 O -0.58 -21.77 15.17 -3.06 -0.05 -21.81 16 21 C -0.12 -2.95 3.55 -10.43 -0.04 -2.99 16 22 C -0.09 -1.63 6.37 30.53 0.19 -1.43 16 23 C -0.17 -2.79 10.77 26.27 0.28 -2.51 16 24 C -0.17 -3.11 10.77 26.27 0.28 -2.83 16 25 C -0.09 -2.14 6.18 30.53 0.19 -1.96 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.36 16.43 5.66 -92.71 -0.52 15.91 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 11.25 8.60 -92.71 -0.80 10.46 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 38 H 0.08 1.51 7.88 -2.38 -0.02 1.49 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.06 6.96 -2.39 -0.02 2.04 16 Total: -1.00 -67.70 341.77 1.82 -65.87 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.39 Total: 36.11 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 3.76 Total: -9.14 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.41 Total: -118.92 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -67.70 1.82 -65.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085155683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.075 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds