Wall clock time and date at job start Tue Mar 31 2020 00:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48507 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47344 * 300.00152 * 3 2 1 6 6 H 1.48506 * 109.46807 * 60.00186 * 3 2 1 7 7 C 1.38806 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00056 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47545 * 34.99092 * 10 9 7 12 12 C 1.53003 * 109.46660 * 274.99354 * 10 9 7 13 13 C 1.52997 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47114 * 59.99975 * 13 12 10 15 15 C 1.53003 * 109.47087 * 300.00120 * 14 13 12 16 16 C 1.52997 * 109.47241 * 59.99958 * 15 14 13 17 17 H 1.09004 * 109.46812 * 60.00212 * 16 15 14 18 18 N 1.46498 * 109.47036 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99828 * 274.72131 * 18 16 15 20 20 O 1.21613 * 119.99962 * 0.28066 * 19 18 16 21 21 C 1.47108 * 120.00078 * 180.27699 * 19 18 16 22 22 C 1.32988 * 119.99808 * 180.02562 * 21 19 18 23 23 C 1.51404 * 136.32146 * 359.63343 * 22 21 19 24 24 C 1.53367 * 87.52103 * 206.05294 * 23 22 21 25 25 C 1.51412 * 136.31427 * 179.97438 * 22 21 19 26 26 H 0.96999 * 120.00722 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00006 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.47044 * 299.99840 * 12 10 9 29 29 H 1.08997 * 109.47066 * 59.99946 * 12 10 9 30 30 H 1.09003 * 109.47189 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.47096 * 299.99819 * 13 12 10 32 32 H 1.08995 * 109.47266 * 59.99948 * 14 13 12 33 33 H 1.09000 * 109.47204 * 180.02562 * 14 13 12 34 34 H 1.09009 * 109.46941 * 299.99855 * 15 14 13 35 35 H 1.08997 * 109.47066 * 180.02562 * 15 14 13 36 36 H 0.97001 * 120.00384 * 95.00578 * 18 16 15 37 37 H 1.07991 * 119.99687 * 0.02562 * 21 19 18 38 38 H 1.08998 * 113.56056 * 320.63877 * 23 22 21 39 39 H 1.09004 * 113.56286 * 91.36829 * 23 22 21 40 40 H 1.09004 * 113.97423 * 220.28951 * 24 23 22 41 41 H 1.09006 * 113.60070 * 88.79537 * 24 23 22 42 42 H 1.08999 * 113.55796 * 268.62982 * 25 22 21 43 43 H 1.09002 * 113.55952 * 39.28923 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 2.9686 -3.5502 0.5916 12 6 2.4231 -4.0361 -1.4350 13 6 3.1876 -5.3614 -1.4340 14 6 2.3096 -6.4562 -0.8247 15 6 1.9448 -6.0768 0.6120 16 6 1.1802 -4.7516 0.6110 17 1 0.2699 -4.8578 0.0209 18 7 0.8315 -4.3880 1.9866 19 6 -0.2898 -4.8797 2.5499 20 8 -1.0094 -5.6293 1.9180 21 6 -0.6433 -4.5099 3.9292 22 6 -1.7495 -4.9955 4.4851 23 6 -2.8758 -5.9141 4.0609 24 6 -3.7589 -5.1970 5.0895 25 6 -2.4479 -4.8716 5.8228 26 1 -0.4851 0.8400 0.0004 27 1 0.3557 -2.3881 0.0005 28 1 1.5127 -4.1427 -2.0249 29 1 3.0482 -3.2560 -1.8692 30 1 3.4479 -5.6315 -2.4575 31 1 4.0979 -5.2553 -0.8440 32 1 1.3993 -6.5624 -1.4147 33 1 2.8544 -7.4003 -0.8236 34 1 2.8552 -5.9707 1.2021 35 1 1.3196 -6.8570 1.0462 36 1 1.4054 -3.7901 2.4907 37 1 -0.0044 -3.8440 4.4902 38 1 -3.1979 -5.7617 3.0308 39 1 -2.6953 -6.9628 4.2973 40 1 -4.4207 -5.8616 5.6451 41 1 -4.2698 -4.3207 4.6906 42 1 -2.1501 -5.6345 6.5420 43 1 -2.4179 -3.8644 6.2383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085166614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:55 Heat of formation + Delta-G solvation = -4.418075 kcal Electronic energy + Delta-G solvation = -22040.788878 eV Core-core repulsion = 18893.386137 eV Total energy + Delta-G solvation = -3147.402740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74103 -38.62317 -37.41819 -34.01507 -33.58174 -31.14557 -30.88491 -29.03576 -27.58161 -25.75937 -23.78454 -23.50818 -21.89519 -21.03887 -20.14003 -19.59631 -18.04991 -17.10565 -16.56790 -15.99192 -15.47460 -15.03601 -14.48957 -14.40389 -14.04709 -13.77749 -13.62737 -13.34878 -12.92226 -12.65228 -12.47712 -12.14836 -12.06997 -11.87693 -11.66898 -11.06704 -11.00354 -10.92451 -10.80153 -10.72867 -10.55383 -10.44124 -10.28278 -10.12810 -9.72092 -9.61322 -9.30144 -9.06625 -8.90594 -8.42585 -6.97331 -5.77340 -3.06954 1.58766 3.41142 3.46958 3.49325 3.59922 3.73495 4.46682 4.53623 4.56249 4.76331 5.07957 5.10461 5.18312 5.27202 5.42139 5.51268 5.54474 5.56283 5.59192 5.70447 5.75224 5.78674 5.86199 5.93100 5.99388 6.01524 6.05520 6.14572 6.20795 6.33686 6.37469 6.48636 6.53199 6.56322 6.61547 6.74445 6.89746 6.97166 7.15467 7.68426 8.07541 8.39873 8.73945 9.51607 10.08745 10.43976 11.44746 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.005611 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.559643 B = 4988.754426 C = 6906.647156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.142 3.858 17 H 0.083 0.917 18 N -0.704 5.704 19 C 0.550 3.450 20 O -0.554 6.554 21 C -0.187 4.187 22 C -0.073 4.073 23 C -0.103 4.103 24 C -0.143 4.143 25 C -0.108 4.108 26 H 0.254 0.746 27 H 0.385 0.615 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.403 0.597 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 -12.867 8.156 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.036 3.964 17 H 0.101 0.899 18 N -0.352 5.352 19 C 0.339 3.661 20 O -0.434 6.434 21 C -0.208 4.208 22 C -0.075 4.075 23 C -0.140 4.140 24 C -0.180 4.180 25 C -0.145 4.145 26 H 0.064 0.936 27 H 0.219 0.781 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.305 -13.224 7.711 15.310 hybrid contribution 0.507 1.484 0.172 1.577 sum 0.202 -11.740 7.882 14.142 Atomic orbital electron populations 1.69684 1.05091 1.25490 1.57476 1.24734 0.95431 0.97607 1.02992 0.86167 0.78773 0.84354 0.77165 1.20592 1.21931 1.21960 1.19254 0.90932 0.84027 1.42835 0.91158 1.42427 1.05834 0.99491 1.88490 1.20467 0.93923 0.85827 0.93561 0.93220 1.22218 0.99923 0.95495 0.99757 1.21577 0.98512 0.95713 0.99924 1.21472 0.99864 0.97961 0.95876 1.21866 0.99951 0.97366 0.97035 1.21261 0.98896 0.93854 0.82349 0.89903 1.45793 1.24963 1.49137 1.15293 1.18337 0.80793 0.80373 0.86601 1.90721 1.51044 1.37211 1.64443 1.21685 0.97905 1.05410 0.95759 1.23330 0.92101 0.94974 0.97094 1.22162 0.92959 0.98082 1.00813 1.22727 0.95801 1.01183 0.98297 1.22322 0.94966 1.02637 0.94571 0.93583 0.78128 0.92485 0.91652 0.92727 0.92418 0.92000 0.92460 0.92124 0.91986 0.76277 0.85175 0.89529 0.88862 0.90705 0.89709 0.88508 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.51 4.95 -53.42 -0.26 -17.78 16 10 C 0.17 3.32 2.29 -67.93 -0.16 3.16 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.13 -2.34 5.50 -26.73 -0.15 -2.49 16 13 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 15 C -0.12 -1.81 5.50 -26.73 -0.15 -1.96 16 16 C 0.14 2.49 1.98 -67.93 -0.13 2.35 16 17 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 18 N -0.70 -12.02 4.90 -54.99 -0.27 -12.29 16 19 C 0.55 9.77 7.73 -12.66 -0.10 9.67 16 20 O -0.55 -11.24 14.81 5.27 0.08 -11.17 16 21 C -0.19 -2.77 10.03 -37.80 -0.38 -3.15 16 22 C -0.07 -0.98 6.93 -100.48 -0.70 -1.68 16 23 C -0.10 -1.30 6.99 -27.56 -0.19 -1.50 16 24 C -0.14 -1.44 8.17 -26.19 -0.21 -1.65 16 25 C -0.11 -1.08 7.96 -27.39 -0.22 -1.30 16 26 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.38 10.35 7.80 -40.82 -0.32 10.04 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 6.51 8.58 -40.82 -0.35 6.16 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.09 1.29 7.49 -51.93 -0.39 0.90 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -30.91 348.51 -9.78 -40.69 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -7.34 Total: 14.45 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.94 Total: -9.02 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.19 Total: -57.25 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.91 -9.78 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085166614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.275 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds