Wall clock time and date at job start Tue Mar 31 2020 00:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00498 * 2 1 4 4 H 1.48494 * 109.47393 * 270.00475 * 3 2 1 5 5 H 1.48497 * 109.46869 * 30.00209 * 3 2 1 6 6 H 1.48501 * 109.47058 * 150.00022 * 3 2 1 7 7 C 1.38811 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00452 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00002 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46969 * 35.00654 * 10 9 7 12 12 C 1.52997 * 109.47792 * 275.00591 * 10 9 7 13 13 C 1.52994 * 109.47697 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46967 * 59.99817 * 13 12 10 15 15 C 1.52997 * 109.47043 * 300.00011 * 14 13 12 16 16 C 1.53003 * 109.46870 * 155.00410 * 10 9 7 17 17 H 1.08998 * 109.46978 * 60.00807 * 16 10 9 18 18 N 1.46497 * 109.47072 * 300.00080 * 16 10 9 19 19 C 1.34781 * 119.99684 * 155.00143 * 18 16 10 20 20 O 1.21280 * 119.99960 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99875 * 180.02562 * 19 18 16 22 22 H 1.09004 * 115.56211 * 34.30838 * 21 19 18 23 23 C 1.53004 * 117.49613 * 248.62041 * 21 19 18 24 24 C 1.52992 * 117.49778 * 180.02562 * 21 19 18 25 25 C 1.52993 * 138.58906 * 336.59047 * 24 21 19 26 26 C 1.53002 * 60.03097 * 229.10108 * 25 24 21 27 27 H 0.97002 * 119.99689 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99944 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46960 * 59.99887 * 12 10 9 30 30 H 1.09002 * 109.46916 * 300.00096 * 12 10 9 31 31 H 1.09002 * 109.46966 * 300.00004 * 13 12 10 32 32 H 1.08996 * 109.47457 * 179.97438 * 13 12 10 33 33 H 1.09010 * 109.46896 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.47125 * 60.00284 * 14 13 12 35 35 H 1.09002 * 109.47383 * 300.00115 * 15 14 13 36 36 H 1.09003 * 109.46942 * 180.02562 * 15 14 13 37 37 H 0.96997 * 120.00461 * 335.00342 * 18 16 10 38 38 H 1.09000 * 117.49881 * 145.02346 * 23 21 19 39 39 H 1.08998 * 117.51886 * 359.97438 * 23 21 19 40 40 H 1.09002 * 117.49972 * 336.60209 * 25 24 21 41 41 H 1.09002 * 117.49720 * 121.60095 * 25 24 21 42 42 H 1.09000 * 117.49996 * 107.50719 * 26 25 24 43 43 H 1.09007 * 117.49696 * 252.52389 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9690 -3.5509 0.5872 12 6 2.4208 -4.0351 -1.4390 13 6 3.1851 -5.3604 -1.4402 14 6 2.3077 -6.4557 -0.8307 15 6 1.9449 -6.0775 0.6067 16 6 1.1810 -4.7524 0.6081 17 1 0.2699 -4.8584 0.0191 18 7 0.8335 -4.3903 1.9844 19 6 -0.2842 -4.8874 2.5503 20 8 -1.0025 -5.6340 1.9199 21 6 -0.6419 -4.5144 3.9659 22 1 -0.3753 -3.5013 4.2671 23 6 -0.5583 -5.6123 5.0283 24 6 -1.9228 -5.1119 4.5516 25 6 -3.2488 -5.6926 4.0566 26 6 -3.2434 -4.6285 5.1559 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3880 -0.0005 29 1 3.0455 -3.2545 -1.8734 30 1 1.5097 -4.1410 -2.0279 31 1 4.0962 -5.2549 -0.8512 32 1 3.4433 -5.6301 -2.4643 33 1 2.8525 -7.3999 -0.8312 34 1 1.3967 -6.5612 -1.4197 35 1 2.8560 -5.9720 1.1957 36 1 1.3202 -6.8580 1.0411 37 1 1.4078 -3.7928 2.4885 38 1 -0.2368 -5.3216 6.0284 39 1 -0.2451 -6.6046 4.7035 40 1 -3.5916 -5.3918 3.0666 41 1 -3.4901 -6.7151 4.3470 42 1 -3.5828 -3.6276 4.8892 43 1 -3.4808 -4.9511 6.1697 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085344179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:03 Heat of formation + Delta-G solvation = -2.432733 kcal Electronic energy + Delta-G solvation = -22209.643963 eV Core-core repulsion = 19062.327314 eV Total energy + Delta-G solvation = -3147.316649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21722 -39.64671 -38.14021 -35.82543 -35.04753 -33.54250 -32.99682 -30.64086 -29.35504 -25.77165 -25.20520 -23.28973 -23.11778 -22.46223 -21.39988 -20.92414 -19.99524 -19.10734 -18.02882 -17.37388 -16.69251 -16.07978 -15.89325 -15.84101 -15.59728 -15.26300 -15.25033 -14.69450 -14.60162 -14.11262 -13.70196 -13.58996 -13.36973 -12.93483 -12.81398 -12.64073 -12.36823 -12.25261 -12.17467 -12.04106 -12.01667 -11.65158 -11.44652 -11.17977 -11.12171 -11.06223 -10.97532 -10.90472 -10.59558 -9.91236 -9.00536 -7.91995 -5.21222 1.47766 1.49008 1.55024 1.57150 2.17836 2.56370 2.75743 2.88589 3.35388 3.41410 3.67687 3.76402 3.84961 3.89020 4.12528 4.17367 4.25707 4.31516 4.42768 4.46660 4.53691 4.57956 4.63949 4.69481 4.74228 4.76577 4.81551 4.94619 4.99591 5.00767 5.05505 5.17217 5.23404 5.26954 5.28688 5.30354 5.46114 5.52345 5.57387 5.69904 6.27561 6.65577 7.33070 7.34079 8.07813 8.32282 9.31164 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.005914 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.186329 B = 4732.994785 C = 6535.433841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.172 3.828 11 H 0.059 0.941 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.149 3.851 17 H 0.047 0.953 18 N -0.702 5.702 19 C 0.536 3.464 20 O -0.583 6.583 21 C -0.159 4.159 22 H 0.129 0.871 23 C -0.072 4.072 24 C -0.226 4.226 25 C -0.128 4.128 26 C -0.111 4.111 27 H 0.248 0.752 28 H 0.367 0.633 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.408 0.592 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -13.812 9.224 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.371 5.371 10 C 0.064 3.936 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.043 3.957 17 H 0.066 0.934 18 N -0.350 5.350 19 C 0.324 3.676 20 O -0.463 6.463 21 C -0.180 4.180 22 H 0.147 0.853 23 C -0.109 4.109 24 C -0.226 4.226 25 C -0.164 4.164 26 C -0.147 4.147 27 H 0.056 0.944 28 H 0.198 0.802 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.153 0.847 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.816 -14.198 8.786 16.933 hybrid contribution -0.133 1.760 -0.410 1.812 sum 2.683 -12.439 8.376 15.234 Atomic orbital electron populations 1.69851 1.06749 1.25731 1.59854 1.25510 0.96159 1.00953 1.04107 0.85190 0.77853 0.79843 0.77166 1.21974 1.22738 1.18995 1.19597 0.91409 0.84860 1.40420 0.90211 1.42587 1.05096 1.00806 1.88566 1.20674 0.93862 0.84280 0.94818 0.92291 1.22094 0.99441 0.97558 0.97829 1.21512 0.98378 0.93227 1.01586 1.21483 0.99771 0.99138 0.94468 1.21783 1.00009 0.94952 0.98458 1.21126 0.97410 0.95012 0.82108 0.93450 1.45857 1.25226 1.49120 1.14823 1.20128 0.80008 0.79300 0.88162 1.90621 1.51804 1.38712 1.65189 1.21995 1.03106 1.01241 0.91650 0.85282 1.22731 0.93963 0.96465 0.97701 1.21428 0.86053 1.07882 1.07273 1.22568 0.96164 0.99315 0.98392 1.22858 0.93929 0.98970 0.98950 0.94360 0.80186 0.93106 0.94299 0.90817 0.90830 0.89354 0.93048 0.90195 0.92618 0.75710 0.84687 0.88327 0.90908 0.87217 0.88923 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.23 -12.34 9.93 84.03 0.83 -11.50 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -35.95 4.95 -322.93 -1.60 -37.55 16 10 C 0.17 6.53 2.29 44.99 0.10 6.63 16 11 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 12 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 13 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 14 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 15 C -0.11 -3.10 5.49 30.58 0.17 -2.93 16 16 C 0.15 5.21 1.97 44.98 0.09 5.30 16 17 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 18 N -0.70 -23.81 4.91 -442.60 -2.17 -25.99 16 19 C 0.54 19.05 7.58 87.66 0.66 19.71 16 20 O -0.58 -24.54 15.91 -3.03 -0.05 -24.58 16 21 C -0.16 -4.51 6.19 -11.54 -0.07 -4.58 16 22 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 23 C -0.07 -1.51 10.23 30.58 0.31 -1.19 16 24 C -0.23 -5.85 5.05 -52.18 -0.26 -6.12 16 25 C -0.13 -3.29 10.16 30.59 0.31 -2.98 16 26 C -0.11 -2.34 10.53 30.62 0.32 -2.02 16 27 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.37 20.47 7.80 -92.71 -0.72 19.75 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 12.94 8.60 -92.71 -0.80 12.14 16 38 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -68.48 352.31 1.43 -67.04 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.52 Total: 45.68 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 3.47 Total: -12.78 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -3.49 Total: -122.91 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.48 1.43 -67.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085344179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.610 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds